RNA–Protein interactions for RNA: ENST00000439316.6

CLCNKA-203, Transcript of chloride voltage-gated channel Ka, humanhuman

TSL 2 BASIC

Gene CLCNKA, Length 1,997 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCNKA-203ENST00000439316 NEUROD1Q13562 356 aa24.55■■□□□ 1.52
CLCNKA-203ENST00000439316 CUL7Q14999 1698 aa24.54■■□□□ 1.52
CLCNKA-203ENST00000439316 AQRO60306 1485 aaKnown RBP eCLIP24.53■■□□□ 1.52
CLCNKA-203ENST00000439316 HNRNPUL2Q1KMD3 747 aaKnown RBP24.53■■□□□ 1.52
CLCNKA-203ENST00000439316 APLP2Q06481 763 aa24.52■■□□□ 1.52
CLCNKA-203ENST00000439316 ZNF608Q9ULD9 1512 aaPredicted RBP24.5■■□□□ 1.51
CLCNKA-203ENST00000439316 RANGAP1P46060 587 aaPredicted RBP24.49■■□□□ 1.51
CLCNKA-203ENST00000439316 ARAP1Q96P48 1450 aa24.48■■□□□ 1.51
CLCNKA-203ENST00000439316 CENPBP07199 599 aaPredicted RBP24.48■■□□□ 1.51
CLCNKA-203ENST00000439316 PBRM1Q86U86 1689 aa24.48■■□□□ 1.51
CLCNKA-203ENST00000439316 GRIN2BQ13224 1484 aa24.4■■□□□ 1.5
CLCNKA-203ENST00000439316 EIF4G3O43432 1585 aaKnown RBP24.4■■□□□ 1.5
CLCNKA-203ENST00000439316 FHAD1B1AJZ9 1412 aa24.32■■□□□ 1.48
CLCNKA-203ENST00000439316 ADAMTS12P58397 1594 aa24.32■■□□□ 1.48
CLCNKA-203ENST00000439316 GTF3C3Q9Y5Q9 886 aa24.29■■□□□ 1.48
CLCNKA-203ENST00000439316 CTTNBP2Q8WZ74 1663 aa24.29■■□□□ 1.48
CLCNKA-203ENST00000439316 CLSPNQ9HAW4 1339 aa24.28■■□□□ 1.48
CLCNKA-203ENST00000439316 SNAPC4Q5SXM2 1469 aa24.27■■□□□ 1.48
CLCNKA-203ENST00000439316 RRBP1Q9P2E9 1410 aaKnown RBP24.26■■□□□ 1.47
CLCNKA-203ENST00000439316 ARHGAP35Q9NRY4 1499 aa24.26■■□□□ 1.47
CLCNKA-203ENST00000439316 DHX57Q6P158 1386 aaKnown RBP24.23■■□□□ 1.47
CLCNKA-203ENST00000439316 KANK4Q5T7N3 995 aaPredicted RBP24.22■■□□□ 1.47
CLCNKA-203ENST00000439316 MAGI1Q96QZ7 1491 aaPredicted RBP24.19■■□□□ 1.46
CLCNKA-203ENST00000439316 MIER1Q8N108 512 aa24.16■■□□□ 1.46
CLCNKA-203ENST00000439316 GRIN2AQ12879 1464 aa24.12■■□□□ 1.45
CLCNKA-203ENST00000439316 SYNJ2O15056 1496 aa24.11■■□□□ 1.45
CLCNKA-203ENST00000439316 P3H3Q8IVL6 736 aa24.11■■□□□ 1.45
CLCNKA-203ENST00000439316 CHMP7Q8WUX9 453 aaPredicted RBP24.1■■□□□ 1.45
CLCNKA-203ENST00000439316 EFCAB5A4FU69 1503 aa24.09■■□□□ 1.45
CLCNKA-203ENST00000439316 CCNB3Q8WWL7 1395 aa24.08■■□□□ 1.45
CLCNKA-203ENST00000439316 FBLN2P98095 1184 aa24.08■■□□□ 1.45
CLCNKA-203ENST00000439316 MAP3K1Q13233 1512 aa24.07■■□□□ 1.44
CLCNKA-203ENST00000439316 IQGAP2Q13576 1575 aa24.06■■□□□ 1.44
CLCNKA-203ENST00000439316 YTHDC1Q96MU7 727 aaKnown RBP24.05■■□□□ 1.44
CLCNKA-203ENST00000439316 FHOD3Q2V2M9 1422 aa24.04■■□□□ 1.44
CLCNKA-203ENST00000439316 TIAM1Q13009 1591 aa24.03■■□□□ 1.44
CLCNKA-203ENST00000439316 SAMD9Q5K651 1589 aa24.02■■□□□ 1.44
CLCNKA-203ENST00000439316 KIAA0586Q9BVV6 1533 aa23.99■■□□□ 1.43
CLCNKA-203ENST00000439316 CEP170Q5SW79 1584 aa23.98■■□□□ 1.43
CLCNKA-203ENST00000439316 NUP160Q12769 1436 aa23.93■■□□□ 1.42
CLCNKA-203ENST00000439316 UGGT2Q9NYU1 1516 aa23.92■■□□□ 1.42
CLCNKA-203ENST00000439316 PCF11O94913 1555 aaKnown RBP23.91■■□□□ 1.42
CLCNKA-203ENST00000439316 CFAP43Q8NDM7 1665 aa23.91■■□□□ 1.42
CLCNKA-203ENST00000439316 LRRC9Q6ZRR7 1453 aa23.9■■□□□ 1.42
CLCNKA-203ENST00000439316 CHD1O14646 1710 aa23.9■■□□□ 1.42
CLCNKA-203ENST00000439316 FMN1Q68DA7 1419 aa23.89■■□□□ 1.41
CLCNKA-203ENST00000439316 RAB3GAP2Q9H2M9 1393 aa23.86■■□□□ 1.41
CLCNKA-203ENST00000439316 MAPKBP1O60336 1514 aa23.85■■□□□ 1.41
CLCNKA-203ENST00000439316 ATP1B4Q9UN42 357 aaPredicted RBP23.85■■□□□ 1.41
CLCNKA-203ENST00000439316 CASKIN1Q8WXD9 1431 aa23.84■■□□□ 1.41
CLCNKA-203ENST00000439316 FYCO1Q9BQS8 1478 aa23.83■■□□□ 1.41
CLCNKA-203ENST00000439316 DISP1Q96F81 1524 aa23.83■■□□□ 1.41
CLCNKA-203ENST00000439316 KIAA0556O60303 1618 aa23.81■■□□□ 1.4
CLCNKA-203ENST00000439316 JPH4Q96JJ6 628 aa23.8■■□□□ 1.4
CLCNKA-203ENST00000439316 PHLDB1Q86UU1 1377 aa23.8■■□□□ 1.4
CLCNKA-203ENST00000439316 ITGAEP38570 1179 aa23.78■■□□□ 1.4
CLCNKA-203ENST00000439316 SETD5Q9C0A6 1442 aa23.78■■□□□ 1.4
CLCNKA-203ENST00000439316 LRRIQ1Q96JM4 1722 aa23.71■■□□□ 1.39
CLCNKA-203ENST00000439316 CARMIL2Q6F5E8 1435 aa23.69■■□□□ 1.38
CLCNKA-203ENST00000439316 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP23.65■■□□□ 1.38
CLCNKA-203ENST00000439316 HECW1Q76N89 1606 aa23.64■■□□□ 1.37
CLCNKA-203ENST00000439316 PRG4Q92954 1404 aaPredicted RBP23.63■■□□□ 1.37
CLCNKA-203ENST00000439316 FAM50AQ14320 339 aaKnown RBP23.61■■□□□ 1.37
CLCNKA-203ENST00000439316 SHROOM2Q13796 1616 aa23.6■■□□□ 1.37
CLCNKA-203ENST00000439316 CCDC18Q5T9S5 1454 aa23.58■■□□□ 1.37
CLCNKA-203ENST00000439316 EPRSP07814 1512 aaKnown RBP23.58■■□□□ 1.37
CLCNKA-203ENST00000439316 RAPGEF6Q8TEU7 1601 aa23.58■■□□□ 1.37
CLCNKA-203ENST00000439316 CLASP1Q7Z460 1538 aa23.58■■□□□ 1.36
CLCNKA-203ENST00000439316 ARID3CA6NKF2 412 aa23.56■■□□□ 1.36
CLCNKA-203ENST00000439316 MTUS2Q5JR59 1369 aa23.56■■□□□ 1.36
CLCNKA-203ENST00000439316 PLB1Q6P1J6 1458 aa23.55■■□□□ 1.36
CLCNKA-203ENST00000439316 CDK13Q14004 1512 aaKnown RBP23.54■■□□□ 1.36
CLCNKA-203ENST00000439316 NUP153P49790 1475 aaKnown RBP23.53■■□□□ 1.36
CLCNKA-203ENST00000439316 TIMELESSQ9UNS1 1208 aa23.53■■□□□ 1.36
CLCNKA-203ENST00000439316 FGD6Q6ZV73 1430 aa23.51■■□□□ 1.35
CLCNKA-203ENST00000439316 ERCC6L2Q5T890 1561 aa23.5■■□□□ 1.35
CLCNKA-203ENST00000439316 MAGI3Q5TCQ9 1506 aa23.49■■□□□ 1.35
CLCNKA-203ENST00000439316 SIN3AQ96ST3 1273 aa23.49■■□□□ 1.35
CLCNKA-203ENST00000439316 PTPRGP23470 1445 aa23.48■■□□□ 1.35
CLCNKA-203ENST00000439316 EHBP1L1Q8N3D4 1523 aa23.47■■□□□ 1.35
CLCNKA-203ENST00000439316 ABCA8O94911 1581 aa23.46■■□□□ 1.35
CLCNKA-203ENST00000439316 SUPT16HQ9Y5B9 1047 aaKnown RBP23.45■■□□□ 1.34
CLCNKA-203ENST00000439316 SUPT6HQ7KZ85 1726 aaKnown RBP23.43■■□□□ 1.34
CLCNKA-203ENST00000439316 NCOA2Q15596 1464 aa23.42■■□□□ 1.34
CLCNKA-203ENST00000439316 HFM1A2PYH4 1435 aa23.4■■□□□ 1.34
CLCNKA-203ENST00000439316 OSCARQ8IYS5 282 aa23.39■■□□□ 1.33
CLCNKA-203ENST00000439316 PTPN23Q9H3S7 1636 aa23.39■■□□□ 1.33
CLCNKA-203ENST00000439316 PPP1R15AO75807 674 aaPredicted RBP23.37■■□□□ 1.33
CLCNKA-203ENST00000439316 PTPRKQ15262 1439 aa23.36■■□□□ 1.33
CLCNKA-203ENST00000439316 CDK11AQ9UQ88 783 aaPredicted RBP23.36■■□□□ 1.33
CLCNKA-203ENST00000439316 KCNH8Q96L42 1107 aa23.35■■□□□ 1.33
CLCNKA-203ENST00000439316 ARHGEF11O15085 1522 aa23.35■■□□□ 1.33
CLCNKA-203ENST00000439316 MYOM3Q5VTT5 1437 aa23.35■■□□□ 1.33
CLCNKA-203ENST00000439316 UACAQ9BZF9 1416 aa23.35■■□□□ 1.33
CLCNKA-203ENST00000439316 MYT1Q01538 1121 aa23.34■■□□□ 1.33
CLCNKA-203ENST00000439316 ATP10BO94823 1461 aa23.33■■□□□ 1.33
CLCNKA-203ENST00000439316 DDX10Q13206 875 aaKnown RBP23.32■■□□□ 1.32
CLCNKA-203ENST00000439316 NAIPQ13075 1403 aa23.29■■□□□ 1.32
CLCNKA-203ENST00000439316 TROQ12816 1431 aaPredicted RBP23.28■■□□□ 1.32
CLCNKA-203ENST00000439316 TONSLQ96HA7 1378 aa23.26■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms