RNA–Protein interactions for RNA: ENST00000437607.1

PTPRF-208, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 788 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-208ENST00000437607 CUL7Q14999 1698 aa21.14■□□□□ 0.97
PTPRF-208ENST00000437607 ADCY10Q96PN6 1610 aa21.11■□□□□ 0.97
PTPRF-208ENST00000437607 IGF1RP08069 1367 aa21.08■□□□□ 0.96
PTPRF-208ENST00000437607 KIAA0586Q9BVV6 1533 aa21.06■□□□□ 0.96
PTPRF-208ENST00000437607 AEBP2Q6ZN18 517 aaPredicted RBP21.06■□□□□ 0.96
PTPRF-208ENST00000437607 MAPKBP1O60336 1514 aa21.05■□□□□ 0.96
PTPRF-208ENST00000437607 DIP2BQ9P265 1576 aa21.05■□□□□ 0.96
PTPRF-208ENST00000437607 KIF27Q86VH2 1401 aa21.04■□□□□ 0.96
PTPRF-208ENST00000437607 ABCC10Q5T3U5 1492 aa21.03■□□□□ 0.96
PTPRF-208ENST00000437607 TSPOAP1O95153 1857 aa21.01■□□□□ 0.95
PTPRF-208ENST00000437607 FAM69CQ0P6D2 419 aa20.95■□□□□ 0.94
PTPRF-208ENST00000437607 NPM1P06748 294 aaKnown RBP eCLIP20.93■□□□□ 0.94
PTPRF-208ENST00000437607 CARMIL1Q5VZK9 1371 aa20.91■□□□□ 0.94
PTPRF-208ENST00000437607 IQGAP2Q13576 1575 aa20.89■□□□□ 0.94
PTPRF-208ENST00000437607 KDM6BO15054 1643 aa20.87■□□□□ 0.93
PTPRF-208ENST00000437607 PTPRGP23470 1445 aa20.85■□□□□ 0.93
PTPRF-208ENST00000437607 PPRC1Q5VV67 1664 aaKnown RBP20.83■□□□□ 0.93
PTPRF-208ENST00000437607 TNIKQ9UKE5 1360 aa20.82■□□□□ 0.92
PTPRF-208ENST00000437607 ABCC2Q92887 1545 aa20.81■□□□□ 0.92
PTPRF-208ENST00000437607 CARMIL2Q6F5E8 1435 aa20.8■□□□□ 0.92
PTPRF-208ENST00000437607 DISP1Q96F81 1524 aa20.8■□□□□ 0.92
PTPRF-208ENST00000437607 TTBK1Q5TCY1 1321 aaPredicted RBP20.78■□□□□ 0.92
PTPRF-208ENST00000437607 UHRF1BP1LA0JNW5 1464 aa20.76■□□□□ 0.91
PTPRF-208ENST00000437607 GLI2P10070 1586 aa20.76■□□□□ 0.91
PTPRF-208ENST00000437607 UGGT2Q9NYU1 1516 aa20.74■□□□□ 0.91
PTPRF-208ENST00000437607 CTTNBP2Q8WZ74 1663 aa20.74■□□□□ 0.91
PTPRF-208ENST00000437607 ASXL2Q76L83 1435 aa20.74■□□□□ 0.91
PTPRF-208ENST00000437607 KIAA0556O60303 1618 aa20.73■□□□□ 0.91
PTPRF-208ENST00000437607 RAPGEF2Q9Y4G8 1499 aa20.73■□□□□ 0.91
PTPRF-208ENST00000437607 ZCCHC11Q5TAX3 1644 aaKnown RBP20.72■□□□□ 0.91
PTPRF-208ENST00000437607 UACAQ9BZF9 1416 aa20.71■□□□□ 0.91
PTPRF-208ENST00000437607 PLB1Q6P1J6 1458 aa20.71■□□□□ 0.91
PTPRF-208ENST00000437607 MAP3K4Q9Y6R4 1608 aa20.69■□□□□ 0.9
PTPRF-208ENST00000437607 KDM5BQ9UGL1 1544 aa20.68■□□□□ 0.9
PTPRF-208ENST00000437607 KDM4FA0A1W2PPD8 638 aa20.67■□□□□ 0.9
PTPRF-208ENST00000437607 EPRSP07814 1512 aaKnown RBP20.64■□□□□ 0.9
PTPRF-208ENST00000437607 COL17A1Q9UMD9 1497 aaPredicted RBP20.59■□□□□ 0.89
PTPRF-208ENST00000437607 ABCA8O94911 1581 aa20.54■□□□□ 0.88
PTPRF-208ENST00000437607 WDR7Q9Y4E6 1490 aa20.52■□□□□ 0.88
PTPRF-208ENST00000437607 CFAP43Q8NDM7 1665 aa20.51■□□□□ 0.87
PTPRF-208ENST00000437607 TEX14Q8IWB6 1497 aa20.5■□□□□ 0.87
PTPRF-208ENST00000437607 PRXQ9BXM0 1461 aa20.5■□□□□ 0.87
PTPRF-208ENST00000437607 ADGRL1O94910 1474 aa20.5■□□□□ 0.87
PTPRF-208ENST00000437607 GOLGA3Q08378 1498 aa20.5■□□□□ 0.87
PTPRF-208ENST00000437607 MAGI3Q5TCQ9 1506 aa20.42■□□□□ 0.86
PTPRF-208ENST00000437607 CD109Q6YHK3 1445 aa20.38■□□□□ 0.85
PTPRF-208ENST00000437607 SAMD9Q5K651 1589 aa20.37■□□□□ 0.85
PTPRF-208ENST00000437607 KCNH8Q96L42 1107 aa20.35■□□□□ 0.85
PTPRF-208ENST00000437607 KIF21BO75037 1637 aa20.33■□□□□ 0.84
PTPRF-208ENST00000437607 ATP10BO94823 1461 aa20.32■□□□□ 0.84
PTPRF-208ENST00000437607 ABCA9Q8IUA7 1624 aa20.31■□□□□ 0.84
PTPRF-208ENST00000437607 RAPGEF6Q8TEU7 1601 aa20.3■□□□□ 0.84
PTPRF-208ENST00000437607 HECW2Q9P2P5 1572 aa20.29■□□□□ 0.84
PTPRF-208ENST00000437607 CHIC1Q5VXU3 224 aa20.29■□□□□ 0.84
PTPRF-208ENST00000437607 P3H3Q8IVL6 736 aa20.29■□□□□ 0.84
PTPRF-208ENST00000437607 ARAP3Q8WWN8 1544 aa20.27■□□□□ 0.83
PTPRF-208ENST00000437607 ARID3CA6NKF2 412 aa20.26■□□□□ 0.83
PTPRF-208ENST00000437607 CSRNP3Q8WYN3 585 aa20.24■□□□□ 0.83
PTPRF-208ENST00000437607 NUP153P49790 1475 aaKnown RBP20.18■□□□□ 0.82
PTPRF-208ENST00000437607 FRMPD1Q5SYB0 1578 aa20.18■□□□□ 0.82
PTPRF-208ENST00000437607 ADAMTSL3P82987 1691 aa20.16■□□□□ 0.82
PTPRF-208ENST00000437607 ILDR1Q86SU0 546 aaPredicted RBP20.15■□□□□ 0.82
PTPRF-208ENST00000437607 EEA1Q15075 1411 aa20.14■□□□□ 0.81
PTPRF-208ENST00000437607 FHOD3Q2V2M9 1422 aa20.14■□□□□ 0.81
PTPRF-208ENST00000437607 FAM9AQ8IZU1 332 aaPredicted RBP20.14■□□□□ 0.81
PTPRF-208ENST00000437607 NEO1Q92859 1461 aa20.13■□□□□ 0.81
PTPRF-208ENST00000437607 PHLDB1Q86UU1 1377 aa20.13■□□□□ 0.81
PTPRF-208ENST00000437607 RICTORQ6R327 1708 aa20.13■□□□□ 0.81
PTPRF-208ENST00000437607 BCORL1Q5H9F3 1711 aa20.11■□□□□ 0.81
PTPRF-208ENST00000437607 RAPGEF3O95398 923 aa20.09■□□□□ 0.81
PTPRF-208ENST00000437607 RANGAP1P46060 587 aaPredicted RBP20.08■□□□□ 0.81
PTPRF-208ENST00000437607 EFCAB5A4FU69 1503 aa20.07■□□□□ 0.8
PTPRF-208ENST00000437607 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.06■□□□□ 0.8
PTPRF-208ENST00000437607 HNRNPUL2Q1KMD3 747 aaKnown RBP20.06■□□□□ 0.8
PTPRF-208ENST00000437607 TTC37Q6PGP7 1564 aa20.06■□□□□ 0.8
PTPRF-208ENST00000437607 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP20.06■□□□□ 0.8
PTPRF-208ENST00000437607 MADDQ8WXG6 1647 aa20.05■□□□□ 0.8
PTPRF-208ENST00000437607 PTPRMP28827 1452 aa20.05■□□□□ 0.8
PTPRF-208ENST00000437607 CFAP74Q9C0B2 1584 aa20.04■□□□□ 0.8
PTPRF-208ENST00000437607 ARHGEF40Q8TER5 1519 aa20.03■□□□□ 0.8
PTPRF-208ENST00000437607 SIGLEC1Q9BZZ2 1709 aa20.02■□□□□ 0.8
PTPRF-208ENST00000437607 RIMS1Q86UR5 1692 aaKnown RBP20■□□□□ 0.79
PTPRF-208ENST00000437607 CDK13Q14004 1512 aaKnown RBP19.99■□□□□ 0.79
PTPRF-208ENST00000437607 PLEKHD1A6NEE1 506 aa19.98■□□□□ 0.79
PTPRF-208ENST00000437607 AKNAQ7Z591 1439 aa19.98■□□□□ 0.79
PTPRF-208ENST00000437607 FANCAO15360 1455 aa19.98■□□□□ 0.79
PTPRF-208ENST00000437607 DENND4BO75064 1496 aaPredicted RBP19.97■□□□□ 0.79
PTPRF-208ENST00000437607 ZMYM4Q5VZL5 1548 aa19.96■□□□□ 0.79
PTPRF-208ENST00000437607 LRRIQ1Q96JM4 1722 aa19.95■□□□□ 0.78
PTPRF-208ENST00000437607 MYO5CQ9NQX4 1742 aa19.94■□□□□ 0.78
PTPRF-208ENST00000437607 HECW1Q76N89 1606 aa19.91■□□□□ 0.78
PTPRF-208ENST00000437607 PCF11O94913 1555 aaKnown RBP19.91■□□□□ 0.78
PTPRF-208ENST00000437607 ARID4BQ4LE39 1312 aaPredicted RBP19.9■□□□□ 0.78
PTPRF-208ENST00000437607 ZFYVE16Q7Z3T8 1539 aa19.9■□□□□ 0.78
PTPRF-208ENST00000437607 FER1L4A9Z1Z3 1794 aa19.89■□□□□ 0.77
PTPRF-208ENST00000437607 KIF14Q15058 1648 aa19.88■□□□□ 0.77
PTPRF-208ENST00000437607 LMTK3Q96Q04 1460 aa19.88■□□□□ 0.77
PTPRF-208ENST00000437607 ARHGAP35Q9NRY4 1499 aa19.88■□□□□ 0.77
PTPRF-208ENST00000437607 YEATS2Q9ULM3 1422 aa19.88■□□□□ 0.77
PTPRF-208ENST00000437607 PLCH2O75038 1416 aa19.85■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms