RNA–Protein interactions for RNA: ENST00000437600.8

CUX1-206, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 3,031 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-206ENST00000437600 FBLN2P98095 1184 aa14.44□□□□□ -0.1
CUX1-206ENST00000437600 MYT1Q01538 1121 aa14.42□□□□□ -0.1
CUX1-206ENST00000437600 SNAPC4Q5SXM2 1469 aa14.39□□□□□ -0.11
CUX1-206ENST00000437600 APLP2Q06481 763 aa14.38□□□□□ -0.11
CUX1-206ENST00000437600 P3H3Q8IVL6 736 aa14.38□□□□□ -0.11
CUX1-206ENST00000437600 GRIN2BQ13224 1484 aa14.38□□□□□ -0.11
CUX1-206ENST00000437600 ERICH3Q5RHP9 1530 aa14.37□□□□□ -0.11
CUX1-206ENST00000437600 VPS8Q8N3P4 1428 aa14.35□□□□□ -0.11
CUX1-206ENST00000437600 CUL7Q14999 1698 aa14.35□□□□□ -0.11
CUX1-206ENST00000437600 ADAMTS12P58397 1594 aa14.33□□□□□ -0.12
CUX1-206ENST00000437600 ARAP1Q96P48 1450 aa14.32□□□□□ -0.12
CUX1-206ENST00000437600 CHMP7Q8WUX9 453 aaPredicted RBP14.32□□□□□ -0.12
CUX1-206ENST00000437600 ATP1B4Q9UN42 357 aaPredicted RBP14.3□□□□□ -0.12
CUX1-206ENST00000437600 FHAD1B1AJZ9 1412 aa14.3□□□□□ -0.12
CUX1-206ENST00000437600 KANK4Q5T7N3 995 aaPredicted RBP14.28□□□□□ -0.12
CUX1-206ENST00000437600 ARHGAP35Q9NRY4 1499 aa14.27□□□□□ -0.13
CUX1-206ENST00000437600 CTTNBP2Q8WZ74 1663 aa14.25□□□□□ -0.13
CUX1-206ENST00000437600 GRIN2AQ12879 1464 aa14.24□□□□□ -0.13
CUX1-206ENST00000437600 ITGAEP38570 1179 aa14.24□□□□□ -0.13
CUX1-206ENST00000437600 MAGI1Q96QZ7 1491 aaPredicted RBP14.23□□□□□ -0.13
CUX1-206ENST00000437600 SYNJ2O15056 1496 aa14.22□□□□□ -0.13
CUX1-206ENST00000437600 CHD1O14646 1710 aa14.22□□□□□ -0.13
CUX1-206ENST00000437600 DIEXFQ68CQ4 756 aaKnown RBP14.2□□□□□ -0.14
CUX1-206ENST00000437600 FHOD3Q2V2M9 1422 aa14.2□□□□□ -0.14
CUX1-206ENST00000437600 CEP170Q5SW79 1584 aa14.19□□□□□ -0.14
CUX1-206ENST00000437600 IQGAP2Q13576 1575 aa14.15□□□□□ -0.14
CUX1-206ENST00000437600 ARID3CA6NKF2 412 aa14.15□□□□□ -0.15
CUX1-206ENST00000437600 SCAF1Q9H7N4 1312 aaKnown RBP14.1□□□□□ -0.15
CUX1-206ENST00000437600 KIAA0586Q9BVV6 1533 aa14.1□□□□□ -0.15
CUX1-206ENST00000437600 JPH4Q96JJ6 628 aa14.09□□□□□ -0.15
CUX1-206ENST00000437600 NUP160Q12769 1436 aa14.09□□□□□ -0.15
CUX1-206ENST00000437600 YTHDC1Q96MU7 727 aaKnown RBP14.07□□□□□ -0.16
CUX1-206ENST00000437600 ZNF316A6NFI3 1004 aaPredicted RBP14.06□□□□□ -0.16
CUX1-206ENST00000437600 SAMD9Q5K651 1589 aa14.05□□□□□ -0.16
CUX1-206ENST00000437600 NEUROD1Q13562 356 aa14.04□□□□□ -0.16
CUX1-206ENST00000437600 DISP1Q96F81 1524 aa14.04□□□□□ -0.16
CUX1-206ENST00000437600 PCF11O94913 1555 aaKnown RBP14.04□□□□□ -0.16
CUX1-206ENST00000437600 ERCC6L2Q5T890 1561 aa14.03□□□□□ -0.16
CUX1-206ENST00000437600 EFCAB5A4FU69 1503 aa14.03□□□□□ -0.16
CUX1-206ENST00000437600 UGGT2Q9NYU1 1516 aa14.01□□□□□ -0.17
CUX1-206ENST00000437600 KIAA0556O60303 1618 aa14.01□□□□□ -0.17
CUX1-206ENST00000437600 PRG4Q92954 1404 aaPredicted RBP14□□□□□ -0.17
CUX1-206ENST00000437600 FAM50AQ14320 339 aaKnown RBP14□□□□□ -0.17
CUX1-206ENST00000437600 TIAM1Q13009 1591 aa13.98□□□□□ -0.17
CUX1-206ENST00000437600 MIER1Q8N108 512 aa13.98□□□□□ -0.17
CUX1-206ENST00000437600 LRRIQ1Q96JM4 1722 aa13.98□□□□□ -0.17
CUX1-206ENST00000437600 PHLDB1Q86UU1 1377 aa13.97□□□□□ -0.17
CUX1-206ENST00000437600 CCNB3Q8WWL7 1395 aa13.96□□□□□ -0.17
CUX1-206ENST00000437600 LRRC9Q6ZRR7 1453 aa13.96□□□□□ -0.17
CUX1-206ENST00000437600 PLB1Q6P1J6 1458 aa13.95□□□□□ -0.18
CUX1-206ENST00000437600 FMN1Q68DA7 1419 aa13.95□□□□□ -0.18
CUX1-206ENST00000437600 OSCARQ8IYS5 282 aa13.95□□□□□ -0.18
CUX1-206ENST00000437600 CLASP1Q7Z460 1538 aa13.93□□□□□ -0.18
CUX1-206ENST00000437600 CARMIL2Q6F5E8 1435 aa13.93□□□□□ -0.18
CUX1-206ENST00000437600 CASKIN1Q8WXD9 1431 aa13.93□□□□□ -0.18
CUX1-206ENST00000437600 ACIN1Q9UKV3 1341 aaKnown RBP13.92□□□□□ -0.18
CUX1-206ENST00000437600 CDK13Q14004 1512 aaKnown RBP13.92□□□□□ -0.18
CUX1-206ENST00000437600 RRBP1Q9P2E9 1410 aaKnown RBP13.92□□□□□ -0.18
CUX1-206ENST00000437600 MTUS2Q5JR59 1369 aa13.91□□□□□ -0.18
CUX1-206ENST00000437600 FYCO1Q9BQS8 1478 aa13.9□□□□□ -0.18
CUX1-206ENST00000437600 DHX57Q6P158 1386 aaKnown RBP13.89□□□□□ -0.19
CUX1-206ENST00000437600 SHROOM2Q13796 1616 aa13.89□□□□□ -0.19
CUX1-206ENST00000437600 GTF3C3Q9Y5Q9 886 aa13.89□□□□□ -0.19
CUX1-206ENST00000437600 PTPRGP23470 1445 aa13.88□□□□□ -0.19
CUX1-206ENST00000437600 RAPGEF6Q8TEU7 1601 aa13.86□□□□□ -0.19
CUX1-206ENST00000437600 NUP153P49790 1475 aaKnown RBP13.86□□□□□ -0.19
CUX1-206ENST00000437600 SIN3AQ96ST3 1273 aa13.85□□□□□ -0.19
CUX1-206ENST00000437600 MAP3K1Q13233 1512 aa13.85□□□□□ -0.19
CUX1-206ENST00000437600 CFAP43Q8NDM7 1665 aa13.84□□□□□ -0.19
CUX1-206ENST00000437600 EPRSP07814 1512 aaKnown RBP13.84□□□□□ -0.19
CUX1-206ENST00000437600 MAGI3Q5TCQ9 1506 aa13.84□□□□□ -0.19
CUX1-206ENST00000437600 HECW1Q76N89 1606 aa13.83□□□□□ -0.19
CUX1-206ENST00000437600 HIRIP3Q9BW71 556 aaPredicted RBP13.81□□□□□ -0.2
CUX1-206ENST00000437600 CENPBP07199 599 aaPredicted RBP13.81□□□□□ -0.2
CUX1-206ENST00000437600 RAB3GAP2Q9H2M9 1393 aa13.8□□□□□ -0.2
CUX1-206ENST00000437600 ABCA8O94911 1581 aa13.78□□□□□ -0.2
CUX1-206ENST00000437600 NCOA2Q15596 1464 aa13.78□□□□□ -0.2
CUX1-206ENST00000437600 CHIC2Q9UKJ5 165 aa13.77□□□□□ -0.2
CUX1-206ENST00000437600 PRKCSHP14314 528 aaPredicted RBP13.77□□□□□ -0.21
CUX1-206ENST00000437600 UACAQ9BZF9 1416 aa13.76□□□□□ -0.21
CUX1-206ENST00000437600 ATP10BO94823 1461 aa13.76□□□□□ -0.21
CUX1-206ENST00000437600 FGD6Q6ZV73 1430 aa13.76□□□□□ -0.21
CUX1-206ENST00000437600 CYB5RLQ6IPT4 315 aa13.75□□□□□ -0.21
CUX1-206ENST00000437600 CCDC18Q5T9S5 1454 aa13.75□□□□□ -0.21
CUX1-206ENST00000437600 KCNH8Q96L42 1107 aa13.74□□□□□ -0.21
CUX1-206ENST00000437600 ARHGEF11O15085 1522 aa13.73□□□□□ -0.21
CUX1-206ENST00000437600 SETD5Q9C0A6 1442 aa13.72□□□□□ -0.21
CUX1-206ENST00000437600 RRP7BPQ9NSQ0 103 aa13.72□□□□□ -0.21
CUX1-206ENST00000437600 KIF14Q15058 1648 aa13.71□□□□□ -0.21
CUX1-206ENST00000437600 PTPRKQ15262 1439 aa13.71□□□□□ -0.21
CUX1-206ENST00000437600 MYOM3Q5VTT5 1437 aa13.7□□□□□ -0.22
CUX1-206ENST00000437600 ADCY10Q96PN6 1610 aa13.7□□□□□ -0.22
CUX1-206ENST00000437600 EHBP1L1Q8N3D4 1523 aa13.7□□□□□ -0.22
CUX1-206ENST00000437600 ABCC2Q92887 1545 aa13.7□□□□□ -0.22
CUX1-206ENST00000437600 PLEKHD1A6NEE1 506 aa13.7□□□□□ -0.22
CUX1-206ENST00000437600 SUPT6HQ7KZ85 1726 aaKnown RBP13.7□□□□□ -0.22
CUX1-206ENST00000437600 ZNF644Q9H582 1327 aaPredicted RBP13.7□□□□□ -0.22
CUX1-206ENST00000437600 CDK11AQ9UQ88 783 aaPredicted RBP13.69□□□□□ -0.22
CUX1-206ENST00000437600 RIMBP3CA6NJZ7 1639 aa13.68□□□□□ -0.22
CUX1-206ENST00000437600 RIMBP3BA6NNM3 1639 aa13.68□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms