RNA–Protein interactions for RNA: ENST00000437048.6

VPS53-204, Transcript of VPS53, GARP complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS53, Length 13,106 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-204ENST00000437048 SLC4A1APQ9BWU0 796 aaKnown RBP9.36□□□□□ -0.91
VPS53-204ENST00000437048 TMC1Q8TDI8 760 aa9.34□□□□□ -0.91
VPS53-204ENST00000437048 RSPH6AQ9H0K4 717 aa9.34□□□□□ -0.91
VPS53-204ENST00000437048 SENP3Q9H4L4 574 aaPredicted RBP9.33□□□□□ -0.92
VPS53-204ENST00000437048 PPP4R2Q9NY27 417 aa9.32□□□□□ -0.92
VPS53-204ENST00000437048 NOP58Q9Y2X3 529 aaKnown RBP9.32□□□□□ -0.92
VPS53-204ENST00000437048 RSF1Q96T23 1441 aaPredicted RBP9.32□□□□□ -0.92
VPS53-204ENST00000437048 MTERF4Q7Z6M4 381 aaKnown RBP9.31□□□□□ -0.92
VPS53-204ENST00000437048 CSRNP3Q8WYN3 585 aa9.31□□□□□ -0.92
VPS53-204ENST00000437048 PNNQ9H307 717 aaKnown RBP9.31□□□□□ -0.92
VPS53-204ENST00000437048 ARID3CA6NKF2 412 aa9.31□□□□□ -0.92
VPS53-204ENST00000437048 PTMAP06454 111 aaKnown RBP9.31□□□□□ -0.92
VPS53-204ENST00000437048 A0A0U1RQG5 324 aaPredicted RBP9.31□□□□□ -0.92
VPS53-204ENST00000437048 WDR43Q15061 677 aaKnown RBP eCLIP9.3□□□□□ -0.92
VPS53-204ENST00000437048 CALRP27797 417 aaKnown RBP9.3□□□□□ -0.92
VPS53-204ENST00000437048 MSNP26038 577 aaKnown RBP9.3□□□□□ -0.92
VPS53-204ENST00000437048 CHMP4AQ9BY43 222 aa9.3□□□□□ -0.92
VPS53-204ENST00000437048 SYAP1Q96A49 352 aaPredicted RBP9.29□□□□□ -0.92
VPS53-204ENST00000437048 CCER2I3L3R5 266 aa9.28□□□□□ -0.92
VPS53-204ENST00000437048 SALL2Q9Y467 1007 aaPredicted RBP9.28□□□□□ -0.92
VPS53-204ENST00000437048 DNTTIP2Q5QJE6 756 aaKnown RBP9.28□□□□□ -0.92
VPS53-204ENST00000437048 EIF4G2P78344 907 aaKnown RBP eCLIP9.27□□□□□ -0.932e-8■■■■■ 33.8
VPS53-204ENST00000437048 GOLGA6L3A6NEY3 463 aa9.26□□□□□ -0.93
VPS53-204ENST00000437048 KIAA2012Q0VF49 1180 aa9.26□□□□□ -0.93
VPS53-204ENST00000437048 CCDC34Q96HJ3 373 aa9.26□□□□□ -0.93
VPS53-204ENST00000437048 ZBTB4Q9P1Z0 1013 aaPredicted RBP9.26□□□□□ -0.93
VPS53-204ENST00000437048 HTATSF1O43719 755 aaKnown RBP9.25□□□□□ -0.93
VPS53-204ENST00000437048 MAP7D2Q96T17 732 aa9.25□□□□□ -0.93
VPS53-204ENST00000437048 CHMP4CQ96CF2 233 aa9.25□□□□□ -0.93
VPS53-204ENST00000437048 NAP1L5Q96NT1 182 aaPredicted RBP9.25□□□□□ -0.93
VPS53-204ENST00000437048 PHLDB1Q86UU1 1377 aa9.24□□□□□ -0.93
VPS53-204ENST00000437048 GBP4Q96PP9 640 aa9.24□□□□□ -0.93
VPS53-204ENST00000437048 AMER1Q5JTC6 1135 aaPredicted RBP9.23□□□□□ -0.93
VPS53-204ENST00000437048 MRS2Q9HD23 443 aa9.23□□□□□ -0.93
VPS53-204ENST00000437048 ZCCHC6Q5VYS8 1495 aaKnown RBP9.23□□□□□ -0.93
VPS53-204ENST00000437048 PHF14O94880 888 aa9.23□□□□□ -0.93
VPS53-204ENST00000437048 GOLGA6L1Q8N7Z2 621 aa9.22□□□□□ -0.93
VPS53-204ENST00000437048 GOLGA3Q08378 1498 aa9.22□□□□□ -0.93
VPS53-204ENST00000437048 CFAP53Q96M91 514 aa9.22□□□□□ -0.93
VPS53-204ENST00000437048 CSPP1Q1MSJ5 1256 aa9.21□□□□□ -0.94
VPS53-204ENST00000437048 SETQ01105 290 aaPredicted RBP9.2□□□□□ -0.94
VPS53-204ENST00000437048 MCCP23508 829 aa9.19□□□□□ -0.94
VPS53-204ENST00000437048 TCERG1O14776 1098 aaKnown RBP9.19□□□□□ -0.94
VPS53-204ENST00000437048 TNNT3P45378 269 aaPredicted RBP9.18□□□□□ -0.94
VPS53-204ENST00000437048 HDAC5Q9UQL6 1122 aa9.17□□□□□ -0.94
VPS53-204ENST00000437048 FHAD1B1AJZ9 1412 aa9.17□□□□□ -0.94
VPS53-204ENST00000437048 CLIP1P30622 1438 aa9.17□□□□□ -0.94
VPS53-204ENST00000437048 HSCBQ8IWL3 235 aa9.17□□□□□ -0.94
VPS53-204ENST00000437048 NGEFQ8N5V2 710 aa9.17□□□□□ -0.94
VPS53-204ENST00000437048 MIER1Q8N108 512 aa9.17□□□□□ -0.94
VPS53-204ENST00000437048 CEP164Q9UPV0 1460 aa9.17□□□□□ -0.94
VPS53-204ENST00000437048 GPS2Q13227 327 aa9.16□□□□□ -0.94
VPS53-204ENST00000437048 SKOR2Q2VWA4 1001 aaPredicted RBP9.16□□□□□ -0.94
VPS53-204ENST00000437048 AAMPQ13685 434 aa9.16□□□□□ -0.94
VPS53-204ENST00000437048 MYO15BQ96JP2 1530 aa9.15□□□□□ -0.94
VPS53-204ENST00000437048 DHX8Q14562 1220 aaKnown RBP9.15□□□□□ -0.94
VPS53-204ENST00000437048 ISY1Q9ULR0 285 aaKnown RBP9.14□□□□□ -0.95
VPS53-204ENST00000437048 CEP162Q5TB80 1403 aa9.14□□□□□ -0.95
VPS53-204ENST00000437048 ROCK2O75116 1388 aaKnown RBP9.14□□□□□ -0.95
VPS53-204ENST00000437048 GOLGA6L4A6NEF3 574 aa9.14□□□□□ -0.95
VPS53-204ENST00000437048 TPM4P67936 248 aa9.13□□□□□ -0.95
VPS53-204ENST00000437048 TPRNQ4KMQ1 711 aa9.13□□□□□ -0.95
VPS53-204ENST00000437048 P3H3Q8IVL6 736 aa9.13□□□□□ -0.95
VPS53-204ENST00000437048 DDX11L8A8MPP1 907 aa9.12□□□□□ -0.95
VPS53-204ENST00000437048 ZBTB7CA1YPR0 619 aa9.12□□□□□ -0.95
VPS53-204ENST00000437048 CALD1Q05682 793 aaKnown RBP9.12□□□□□ -0.95
VPS53-204ENST00000437048 FTSJ3Q8IY81 847 aaKnown RBP9.12□□□□□ -0.95
VPS53-204ENST00000437048 KIF3AQ9Y496 699 aa9.12□□□□□ -0.95
VPS53-204ENST00000437048 MTUS2Q5JR59 1369 aa9.12□□□□□ -0.95
VPS53-204ENST00000437048 TAF3Q5VWG9 929 aa9.12□□□□□ -0.95
VPS53-204ENST00000437048 FAM9BQ8IZU0 186 aa9.11□□□□□ -0.95
VPS53-204ENST00000437048 ANO8Q9HCE9 1232 aaPredicted RBP9.11□□□□□ -0.95
VPS53-204ENST00000437048 DDX10Q13206 875 aaKnown RBP9.11□□□□□ -0.95
VPS53-204ENST00000437048 NOM1Q5C9Z4 860 aaKnown RBP9.11□□□□□ -0.95
VPS53-204ENST00000437048 PDE3BQ13370 1112 aa9.11□□□□□ -0.95
VPS53-204ENST00000437048 HSP90AA2PQ14568 343 aaPredicted RBP9.11□□□□□ -0.95
VPS53-204ENST00000437048 TNIKQ9UKE5 1360 aa9.1□□□□□ -0.95
VPS53-204ENST00000437048 ATP6V1DQ9Y5K8 247 aa9.1□□□□□ -0.95
VPS53-204ENST00000437048 HSP90AB1P08238 724 aaKnown RBP9.1□□□□□ -0.95
VPS53-204ENST00000437048 TSPY4P0CV99 314 aa9.09□□□□□ -0.95
VPS53-204ENST00000437048 TSPY10P0CW01 314 aa9.09□□□□□ -0.95
VPS53-204ENST00000437048 NUDCQ9Y266 331 aa9.09□□□□□ -0.95
VPS53-204ENST00000437048 DEKP35659 375 aaKnown RBP9.09□□□□□ -0.95
VPS53-204ENST00000437048 ARID3AQ99856 593 aa9.09□□□□□ -0.95
VPS53-204ENST00000437048 KNSTRNQ9Y448 316 aa9.08□□□□□ -0.96
VPS53-204ENST00000437048 IPO8O15397 1037 aaKnown RBP9.08□□□□□ -0.96
VPS53-204ENST00000437048 FANCIQ9NVI1 1328 aa9.07□□□□□ -0.96
VPS53-204ENST00000437048 CCDC70Q6NSX1 233 aa9.06□□□□□ -0.96
VPS53-204ENST00000437048 TEX35Q5T0J7 233 aa9.06□□□□□ -0.96
VPS53-204ENST00000437048 IPO9Q96P70 1041 aaKnown RBP9.06□□□□□ -0.96
VPS53-204ENST00000437048 MAPK8IP3Q9UPT6 1336 aa9.05□□□□□ -0.96
VPS53-204ENST00000437048 TPM3P06753 285 aa9.05□□□□□ -0.96
VPS53-204ENST00000437048 CCDC66A2RUB6 948 aa9.05□□□□□ -0.96
VPS53-204ENST00000437048 SUPT16HQ9Y5B9 1047 aaKnown RBP9.05□□□□□ -0.96
VPS53-204ENST00000437048 BAZ1AQ9NRL2 1556 aaPredicted RBP9.05□□□□□ -0.96
VPS53-204ENST00000437048 ESF1Q9H501 851 aaKnown RBP9.04□□□□□ -0.96
VPS53-204ENST00000437048 RB1CC1Q8TDY2 1594 aa9.04□□□□□ -0.96
VPS53-204ENST00000437048 PDZRN4Q6ZMN7 1036 aaPredicted RBP9.04□□□□□ -0.96
VPS53-204ENST00000437048 CWC15Q9P013 229 aaKnown RBP9.04□□□□□ -0.96
VPS53-204ENST00000437048 CAVIN1Q6NZI2 390 aaKnown RBP9.04□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 48.1 ms