RNA–Protein interactions for RNA: ENST00000435425.1

SHH-203, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 807 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-203ENST00000435425 SHROOM2Q13796 1616 aa31.24■■■□□ 2.59
SHH-203ENST00000435425 ERCC6L2Q5T890 1561 aa31.22■■■□□ 2.59
SHH-203ENST00000435425 FAM9AQ8IZU1 332 aaPredicted RBP31.22■■■□□ 2.59
SHH-203ENST00000435425 JPH4Q96JJ6 628 aa31.22■■■□□ 2.59
SHH-203ENST00000435425 KIAA0586Q9BVV6 1533 aa31.2■■■□□ 2.59
SHH-203ENST00000435425 CSRNP3Q8WYN3 585 aa31.18■■■□□ 2.58
SHH-203ENST00000435425 PRG4Q92954 1404 aaPredicted RBP31.15■■■□□ 2.58
SHH-203ENST00000435425 EEA1Q15075 1411 aa31.14■■■□□ 2.58
SHH-203ENST00000435425 PRXQ9BXM0 1461 aa31.12■■■□□ 2.57
SHH-203ENST00000435425 IQGAP2Q13576 1575 aa31.07■■■□□ 2.56
SHH-203ENST00000435425 CTTNBP2Q8WZ74 1663 aa31.03■■■□□ 2.56
SHH-203ENST00000435425 TTBK1Q5TCY1 1321 aaPredicted RBP30.91■■■□□ 2.54
SHH-203ENST00000435425 CARMIL2Q6F5E8 1435 aa30.9■■■□□ 2.54
SHH-203ENST00000435425 EHMT2Q96KQ7 1210 aa30.89■■■□□ 2.54
SHH-203ENST00000435425 UGGT2Q9NYU1 1516 aa30.86■■■□□ 2.53
SHH-203ENST00000435425 KIF21BO75037 1637 aa30.86■■■□□ 2.53
SHH-203ENST00000435425 DISP1Q96F81 1524 aa30.83■■■□□ 2.53
SHH-203ENST00000435425 PTPRGP23470 1445 aa30.78■■■□□ 2.52
SHH-203ENST00000435425 TNIKQ9UKE5 1360 aa30.78■■■□□ 2.52
SHH-203ENST00000435425 KIAA0556O60303 1618 aa30.77■■■□□ 2.52
SHH-203ENST00000435425 RANGAP1P46060 587 aaPredicted RBP30.73■■■□□ 2.51
SHH-203ENST00000435425 GOLGA3Q08378 1498 aa30.7■■■□□ 2.51
SHH-203ENST00000435425 UBTFP17480 764 aaKnown RBP30.7■■■□□ 2.51
SHH-203ENST00000435425 TRHP20396 242 aaPredicted RBP30.69■■■□□ 2.5
SHH-203ENST00000435425 ADCY10Q96PN6 1610 aa30.68■■■□□ 2.5
SHH-203ENST00000435425 P3H3Q8IVL6 736 aa30.66■■■□□ 2.5
SHH-203ENST00000435425 NPM1P06748 294 aaKnown RBP eCLIP30.63■■■□□ 2.49
SHH-203ENST00000435425 SAMD9Q5K651 1589 aa30.56■■■□□ 2.48
SHH-203ENST00000435425 UACAQ9BZF9 1416 aa30.56■■■□□ 2.48
SHH-203ENST00000435425 ABCC2Q92887 1545 aa30.5■■■□□ 2.47
SHH-203ENST00000435425 UHRF1BP1LA0JNW5 1464 aa30.49■■■□□ 2.47
SHH-203ENST00000435425 PLB1Q6P1J6 1458 aa30.48■■■□□ 2.47
SHH-203ENST00000435425 FHOD3Q2V2M9 1422 aa30.44■■■□□ 2.46
SHH-203ENST00000435425 EFCAB5A4FU69 1503 aa30.42■■■□□ 2.46
SHH-203ENST00000435425 MAPKBP1O60336 1514 aa30.42■■■□□ 2.46
SHH-203ENST00000435425 ABCA8O94911 1581 aa30.41■■■□□ 2.46
SHH-203ENST00000435425 ZCCHC11Q5TAX3 1644 aaKnown RBP30.37■■■□□ 2.45
SHH-203ENST00000435425 KIF13AQ9H1H9 1805 aa30.36■■■□□ 2.45
SHH-203ENST00000435425 KDM5BQ9UGL1 1544 aa30.35■■■□□ 2.45
SHH-203ENST00000435425 ARID3CA6NKF2 412 aa30.33■■■□□ 2.45
SHH-203ENST00000435425 FAM69CQ0P6D2 419 aa30.31■■■□□ 2.44
SHH-203ENST00000435425 RAPGEF6Q8TEU7 1601 aa30.31■■■□□ 2.44
SHH-203ENST00000435425 ASXL2Q76L83 1435 aa30.3■■■□□ 2.44
SHH-203ENST00000435425 ARHGAP35Q9NRY4 1499 aa30.3■■■□□ 2.44
SHH-203ENST00000435425 ABCC10Q5T3U5 1492 aa30.29■■■□□ 2.44
SHH-203ENST00000435425 DIP2BQ9P265 1576 aa30.27■■■□□ 2.44
SHH-203ENST00000435425 LOC105371045A0A1W2PR82 267 aa30.2■■■□□ 2.43
SHH-203ENST00000435425 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP30.19■■■□□ 2.42
SHH-203ENST00000435425 HNRNPUL2Q1KMD3 747 aaKnown RBP30.19■■■□□ 2.42
SHH-203ENST00000435425 ATP10BO94823 1461 aa30.19■■■□□ 2.42
SHH-203ENST00000435425 ATP1B4Q9UN42 357 aaPredicted RBP30.16■■■□□ 2.42
SHH-203ENST00000435425 TSPOAP1O95153 1857 aa30.16■■■□□ 2.42
SHH-203ENST00000435425 CLIP1P30622 1438 aa30.15■■■□□ 2.42
SHH-203ENST00000435425 NUP153P49790 1475 aaKnown RBP30.15■■■□□ 2.42
SHH-203ENST00000435425 FMN1Q68DA7 1419 aa30.14■■■□□ 2.42
SHH-203ENST00000435425 WDR7Q9Y4E6 1490 aa30.13■■■□□ 2.41
SHH-203ENST00000435425 KCNH8Q96L42 1107 aa30.12■■■□□ 2.41
SHH-203ENST00000435425 EPRSP07814 1512 aaKnown RBP30.11■■■□□ 2.41
SHH-203ENST00000435425 GLI2P10070 1586 aa30.07■■■□□ 2.4
SHH-203ENST00000435425 HECW1Q76N89 1606 aa30.04■■■□□ 2.4
SHH-203ENST00000435425 CEP162Q5TB80 1403 aa30.02■■■□□ 2.4
SHH-203ENST00000435425 CDK13Q14004 1512 aaKnown RBP30.01■■■□□ 2.39
SHH-203ENST00000435425 MAP3K4Q9Y6R4 1608 aa29.98■■■□□ 2.39
SHH-203ENST00000435425 PCF11O94913 1555 aaKnown RBP29.97■■■□□ 2.39
SHH-203ENST00000435425 PLEKHD1A6NEE1 506 aa29.96■■■□□ 2.39
SHH-203ENST00000435425 PPRC1Q5VV67 1664 aaKnown RBP29.94■■■□□ 2.38
SHH-203ENST00000435425 LRRIQ1Q96JM4 1722 aa29.93■■■□□ 2.38
SHH-203ENST00000435425 CFAP43Q8NDM7 1665 aa29.91■■■□□ 2.38
SHH-203ENST00000435425 CASKIN1Q8WXD9 1431 aa29.91■■■□□ 2.38
SHH-203ENST00000435425 CD109Q6YHK3 1445 aa29.88■■■□□ 2.37
SHH-203ENST00000435425 FYCO1Q9BQS8 1478 aa29.84■■■□□ 2.37
SHH-203ENST00000435425 ABCA9Q8IUA7 1624 aa29.83■■■□□ 2.37
SHH-203ENST00000435425 CDK11AQ9UQ88 783 aaPredicted RBP29.82■■■□□ 2.36
SHH-203ENST00000435425 KDM6BO15054 1643 aa29.82■■■□□ 2.36
SHH-203ENST00000435425 TEX14Q8IWB6 1497 aa29.81■■■□□ 2.36
SHH-203ENST00000435425 CCDC18Q5T9S5 1454 aa29.79■■■□□ 2.36
SHH-203ENST00000435425 MAGI3Q5TCQ9 1506 aa29.76■■■□□ 2.36
SHH-203ENST00000435425 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP29.74■■■□□ 2.35
SHH-203ENST00000435425 TTC37Q6PGP7 1564 aa29.71■■■□□ 2.35
SHH-203ENST00000435425 TROQ12816 1431 aaPredicted RBP29.71■■■□□ 2.35
SHH-203ENST00000435425 KIF14Q15058 1648 aa29.69■■■□□ 2.34
SHH-203ENST00000435425 COL17A1Q9UMD9 1497 aaPredicted RBP29.65■■■□□ 2.34
SHH-203ENST00000435425 VPS8Q8N3P4 1428 aa29.63■■■□□ 2.33
SHH-203ENST00000435425 MYO5CQ9NQX4 1742 aa29.59■■■□□ 2.33
SHH-203ENST00000435425 NEO1Q92859 1461 aa29.55■■■□□ 2.32
SHH-203ENST00000435425 FANCAO15360 1455 aa29.55■■■□□ 2.32
SHH-203ENST00000435425 MTUS2Q5JR59 1369 aa29.54■■■□□ 2.32
SHH-203ENST00000435425 PLCH2O75038 1416 aa29.54■■■□□ 2.32
SHH-203ENST00000435425 CFAP74Q9C0B2 1584 aa29.52■■■□□ 2.32
SHH-203ENST00000435425 PHLDB1Q86UU1 1377 aa29.52■■■□□ 2.32
SHH-203ENST00000435425 ARAP3Q8WWN8 1544 aa29.5■■■□□ 2.31
SHH-203ENST00000435425 AKNAQ7Z591 1439 aa29.5■■■□□ 2.31
SHH-203ENST00000435425 TIAM1Q13009 1591 aa29.47■■■□□ 2.31
SHH-203ENST00000435425 ARHGAP5Q13017 1502 aa29.46■■■□□ 2.31
SHH-203ENST00000435425 CDC42BPBQ9Y5S2 1711 aa29.46■■■□□ 2.31
SHH-203ENST00000435425 RAPGEF3O95398 923 aa29.45■■■□□ 2.31
SHH-203ENST00000435425 EFCAB2Q5VUJ9 269 aa29.45■■■□□ 2.31
SHH-203ENST00000435425 EHBP1L1Q8N3D4 1523 aa29.45■■■□□ 2.3
SHH-203ENST00000435425 CDC42BPAQ5VT25 1732 aa29.44■■■□□ 2.3
SHH-203ENST00000435425 PREX2Q70Z35 1606 aa29.42■■■□□ 2.3
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms