RNA–Protein interactions for RNA: ENST00000432907.6

PKNOX1-203, Transcript of PBX/knotted 1 homeobox 1, humanhuman

TSL 2 BASIC

Gene PKNOX1, Length 5,180 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1-203ENST00000432907 TMC1Q8TDI8 760 aa13.87□□□□□ -0.19
PKNOX1-203ENST00000432907 BAZ1AQ9NRL2 1556 aaPredicted RBP13.87□□□□□ -0.19
PKNOX1-203ENST00000432907 GOLGA6L2Q8N9W4 650 aaPredicted RBP13.86□□□□□ -0.19
PKNOX1-203ENST00000432907 B4GALNT3Q6L9W6 998 aa13.81□□□□□ -0.2
PKNOX1-203ENST00000432907 CDK11BP21127 795 aaKnown RBP13.8□□□□□ -0.2
PKNOX1-203ENST00000432907 BAZ1BQ9UIG0 1483 aaKnown RBP13.78□□□□□ -0.2
PKNOX1-203ENST00000432907 DNTTIP2Q5QJE6 756 aaKnown RBP13.74□□□□□ -0.21
PKNOX1-203ENST00000432907 GOLGA6L22H0YM25 854 aa13.74□□□□□ -0.21
PKNOX1-203ENST00000432907 PRKCSHP14314 528 aaPredicted RBP13.74□□□□□ -0.21
PKNOX1-203ENST00000432907 ARID4BQ4LE39 1312 aaPredicted RBP13.73□□□□□ -0.21
PKNOX1-203ENST00000432907 CECR2Q9BXF3 1484 aa13.73□□□□□ -0.21
PKNOX1-203ENST00000432907 L1TD1Q5T7N2 865 aaKnown RBP13.71□□□□□ -0.21
PKNOX1-203ENST00000432907 PTMAP06454 111 aaKnown RBP13.71□□□□□ -0.21
PKNOX1-203ENST00000432907 NCLP19338 710 aaKnown RBP13.7□□□□□ -0.22
PKNOX1-203ENST00000432907 PNNQ9H307 717 aaKnown RBP13.7□□□□□ -0.22
PKNOX1-203ENST00000432907 VSIG10Q8N0Z9 540 aa13.68□□□□□ -0.22
PKNOX1-203ENST00000432907 EIF4G2P78344 907 aaKnown RBP eCLIP13.67□□□□□ -0.22
PKNOX1-203ENST00000432907 AMER1Q5JTC6 1135 aaPredicted RBP13.67□□□□□ -0.22
PKNOX1-203ENST00000432907 SENP3-EIF4A1A0A087X0R7 540 aa13.66□□□□□ -0.22
PKNOX1-203ENST00000432907 P3H3Q8IVL6 736 aa13.66□□□□□ -0.22
PKNOX1-203ENST00000432907 RSPH6AQ9H0K4 717 aa13.64□□□□□ -0.23
PKNOX1-203ENST00000432907 WDR43Q15061 677 aaKnown RBP eCLIP13.64□□□□□ -0.23
PKNOX1-203ENST00000432907 SMARCA2P51531 1590 aa13.63□□□□□ -0.23
PKNOX1-203ENST00000432907 IPO9Q96P70 1041 aaKnown RBP13.63□□□□□ -0.23
PKNOX1-203ENST00000432907 HSP90AA2PQ14568 343 aaPredicted RBP13.62□□□□□ -0.23
PKNOX1-203ENST00000432907 RGS3P49796 1198 aa13.61□□□□□ -0.23
PKNOX1-203ENST00000432907 MROH2BQ7Z745 1585 aa13.61□□□□□ -0.23
PKNOX1-203ENST00000432907 MSNP26038 577 aaKnown RBP13.6□□□□□ -0.23
PKNOX1-203ENST00000432907 SLC24A1O60721 1099 aa13.6□□□□□ -0.23
PKNOX1-203ENST00000432907 CCER2I3L3R5 266 aa13.6□□□□□ -0.23
PKNOX1-203ENST00000432907 ANO8Q9HCE9 1232 aaPredicted RBP13.58□□□□□ -0.24
PKNOX1-203ENST00000432907 ARID3AQ99856 593 aa13.55□□□□□ -0.24
PKNOX1-203ENST00000432907 FANCIQ9NVI1 1328 aa13.55□□□□□ -0.24
PKNOX1-203ENST00000432907 FBLN2P98095 1184 aa13.55□□□□□ -0.24
PKNOX1-203ENST00000432907 USP35Q9P2H5 1018 aa13.54□□□□□ -0.24
PKNOX1-203ENST00000432907 CEP162Q5TB80 1403 aa13.53□□□□□ -0.24
PKNOX1-203ENST00000432907 TIMELESSQ9UNS1 1208 aa13.52□□□□□ -0.25
PKNOX1-203ENST00000432907 WRNQ14191 1432 aaPredicted RBP eCLIP13.52□□□□□ -0.255e-6■■■■■ 29.2
PKNOX1-203ENST00000432907 EEA1Q15075 1411 aa13.52□□□□□ -0.25
PKNOX1-203ENST00000432907 CLIP1P30622 1438 aa13.51□□□□□ -0.25
PKNOX1-203ENST00000432907 CHIC2Q9UKJ5 165 aa13.5□□□□□ -0.25
PKNOX1-203ENST00000432907 ARID3CA6NKF2 412 aa13.5□□□□□ -0.25
PKNOX1-203ENST00000432907 PKNOX2Q96KN3 472 aa13.49□□□□□ -0.25
PKNOX1-203ENST00000432907 TCERG1O14776 1098 aaKnown RBP13.49□□□□□ -0.25
PKNOX1-203ENST00000432907 PLCB2Q00722 1185 aa13.49□□□□□ -0.25
PKNOX1-203ENST00000432907 GZF1Q9H116 711 aaPredicted RBP13.49□□□□□ -0.25
PKNOX1-203ENST00000432907 TOP2AP11388 1531 aaKnown RBP13.48□□□□□ -0.25
PKNOX1-203ENST00000432907 CHAF1AQ13111 956 aaPredicted RBP13.48□□□□□ -0.25
PKNOX1-203ENST00000432907 MYH16Q9H6N6 1097 aa13.48□□□□□ -0.25
PKNOX1-203ENST00000432907 SMARCA4P51532 1647 aa13.48□□□□□ -0.25
PKNOX1-203ENST00000432907 SIN3AQ96ST3 1273 aa13.47□□□□□ -0.25
PKNOX1-203ENST00000432907 GSE1Q14687 1217 aa13.47□□□□□ -0.25
PKNOX1-203ENST00000432907 GOLGA6L3A6NEY3 463 aa13.47□□□□□ -0.25
PKNOX1-203ENST00000432907 ZNF777Q9ULD5 760 aaPredicted RBP13.47□□□□□ -0.25
PKNOX1-203ENST00000432907 HSP90AB1P08238 724 aaKnown RBP13.46□□□□□ -0.25
PKNOX1-203ENST00000432907 SPRYD3Q8NCJ5 442 aa13.45□□□□□ -0.26
PKNOX1-203ENST00000432907 CCDC88BA6NC98 1476 aa13.45□□□□□ -0.26
PKNOX1-203ENST00000432907 SLKQ9H2G2 1235 aaPredicted RBP13.44□□□□□ -0.26
PKNOX1-203ENST00000432907 TPRNQ4KMQ1 711 aa13.44□□□□□ -0.26
PKNOX1-203ENST00000432907 KDM2AQ9Y2K7 1162 aa13.44□□□□□ -0.26
PKNOX1-203ENST00000432907 HSCBQ8IWL3 235 aa13.43□□□□□ -0.26
PKNOX1-203ENST00000432907 ATAD2BQ9ULI0 1458 aa13.43□□□□□ -0.26
PKNOX1-203ENST00000432907 WIZO95785 1651 aa13.43□□□□□ -0.26
PKNOX1-203ENST00000432907 ZBTB7CA1YPR0 619 aa13.39□□□□□ -0.27
PKNOX1-203ENST00000432907 TNNT3P45378 269 aaPredicted RBP13.39□□□□□ -0.27
PKNOX1-203ENST00000432907 KIF27Q86VH2 1401 aa13.38□□□□□ -0.27
PKNOX1-203ENST00000432907 ERCC6Q03468 1493 aa13.37□□□□□ -0.27
PKNOX1-203ENST00000432907 FTSJ3Q8IY81 847 aaKnown RBP13.37□□□□□ -0.27
PKNOX1-203ENST00000432907 KCNH8Q96L42 1107 aa13.36□□□□□ -0.27
PKNOX1-203ENST00000432907 GBP4Q96PP9 640 aa13.36□□□□□ -0.27
PKNOX1-203ENST00000432907 TNIKQ9UKE5 1360 aa13.36□□□□□ -0.27
PKNOX1-203ENST00000432907 A0A0U1RQG5 324 aaPredicted RBP13.35□□□□□ -0.27
PKNOX1-203ENST00000432907 ZRSR1Q15695 479 aaKnown RBP13.35□□□□□ -0.27
PKNOX1-203ENST00000432907 FRAT1Q92837 279 aaPredicted RBP13.35□□□□□ -0.27
PKNOX1-203ENST00000432907 KIAA2012Q0VF49 1180 aa13.35□□□□□ -0.27
PKNOX1-203ENST00000432907 IL27Q8NEV9 243 aa13.35□□□□□ -0.27
PKNOX1-203ENST00000432907 PDS5BQ9NTI5 1447 aa13.34□□□□□ -0.27
PKNOX1-203ENST00000432907 RRP7BPQ9NSQ0 103 aa13.34□□□□□ -0.27
PKNOX1-203ENST00000432907 PODXL2Q9NZ53 605 aa13.34□□□□□ -0.27
PKNOX1-203ENST00000432907 CASC1Q6TDU7 716 aa13.34□□□□□ -0.27
PKNOX1-203ENST00000432907 GOLGA3Q08378 1498 aa13.34□□□□□ -0.27
PKNOX1-203ENST00000432907 PTMSP20962 102 aa13.32□□□□□ -0.28
PKNOX1-203ENST00000432907 CHMP7Q8WUX9 453 aaPredicted RBP13.31□□□□□ -0.28
PKNOX1-203ENST00000432907 RCAN3Q9UKA8 241 aa13.31□□□□□ -0.28
PKNOX1-203ENST00000432907 MTUS2Q5JR59 1369 aa13.3□□□□□ -0.28
PKNOX1-203ENST00000432907 CADPSQ9ULU8 1353 aa13.3□□□□□ -0.28
PKNOX1-203ENST00000432907 SLC4A3P48751 1232 aa13.29□□□□□ -0.28
PKNOX1-203ENST00000432907 GOLGA6L6A8MZA4 724 aa13.29□□□□□ -0.28
PKNOX1-203ENST00000432907 PDE4AP27815 886 aa13.29□□□□□ -0.28
PKNOX1-203ENST00000432907 NRDCO43847 1150 aa13.29□□□□□ -0.28
PKNOX1-203ENST00000432907 NUDCQ9Y266 331 aa13.29□□□□□ -0.28
PKNOX1-203ENST00000432907 CEP164Q9UPV0 1460 aa13.28□□□□□ -0.28
PKNOX1-203ENST00000432907 NEUROD2Q15784 382 aa13.27□□□□□ -0.29
PKNOX1-203ENST00000432907 KNSTRNQ9Y448 316 aa13.27□□□□□ -0.29
PKNOX1-203ENST00000432907 CARD11Q9BXL7 1154 aa13.26□□□□□ -0.29
PKNOX1-203ENST00000432907 EIF4G1Q04637 1599 aaKnown RBP13.25□□□□□ -0.29
PKNOX1-203ENST00000432907 NCAPD3P42695 1498 aa13.25□□□□□ -0.29
PKNOX1-203ENST00000432907 DRC7Q8IY82 874 aa13.25□□□□□ -0.29
PKNOX1-203ENST00000432907 BRPF3Q9ULD4 1205 aa13.25□□□□□ -0.29
PKNOX1-203ENST00000432907 FAM13BQ9NYF5 915 aa13.24□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms