RNA–Protein interactions for RNA: ENST00000430889.2

HOXC4-202, Transcript of homeobox C4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXC4, Length 1,666 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4-202ENST00000430889 GAPVD1Q14C86 1478 aa21.19■□□□□ 0.98
HOXC4-202ENST00000430889 CFAP43Q8NDM7 1665 aa21.16■□□□□ 0.98
HOXC4-202ENST00000430889 MRC2Q9UBG0 1479 aa21.13■□□□□ 0.97
HOXC4-202ENST00000430889 TDRD9Q8NDG6 1382 aaKnown RBP21.13■□□□□ 0.97
HOXC4-202ENST00000430889 PCF11O94913 1555 aaKnown RBP21.13■□□□□ 0.97
HOXC4-202ENST00000430889 FHAD1B1AJZ9 1412 aa21.13■□□□□ 0.97
HOXC4-202ENST00000430889 PBRM1Q86U86 1689 aa21.11■□□□□ 0.97
HOXC4-202ENST00000430889 AQRO60306 1485 aaKnown RBP eCLIP21.09■□□□□ 0.97
HOXC4-202ENST00000430889 HNRNPUL2Q1KMD3 747 aaKnown RBP21.09■□□□□ 0.97
HOXC4-202ENST00000430889 SAMD9Q5K651 1589 aa21.09■□□□□ 0.97
HOXC4-202ENST00000430889 LRRC9Q6ZRR7 1453 aa21.06■□□□□ 0.96
HOXC4-202ENST00000430889 FYCO1Q9BQS8 1478 aa21.06■□□□□ 0.96
HOXC4-202ENST00000430889 WDR62O43379 1518 aa21.05■□□□□ 0.96
HOXC4-202ENST00000430889 FHOD3Q2V2M9 1422 aa21.05■□□□□ 0.96
HOXC4-202ENST00000430889 CASKIN1Q8WXD9 1431 aa21.02■□□□□ 0.96
HOXC4-202ENST00000430889 ADAMTS12P58397 1594 aa21.01■□□□□ 0.95
HOXC4-202ENST00000430889 CCNB3Q8WWL7 1395 aa21.01■□□□□ 0.95
HOXC4-202ENST00000430889 SNAPC4Q5SXM2 1469 aa21■□□□□ 0.95
HOXC4-202ENST00000430889 IFT140Q96RY7 1462 aa20.96■□□□□ 0.95
HOXC4-202ENST00000430889 FMN1Q68DA7 1419 aa20.96■□□□□ 0.95
HOXC4-202ENST00000430889 LRRIQ1Q96JM4 1722 aa20.94■□□□□ 0.94
HOXC4-202ENST00000430889 GRIN2BQ13224 1484 aa20.92■□□□□ 0.94
HOXC4-202ENST00000430889 P3H3Q8IVL6 736 aa20.92■□□□□ 0.94
HOXC4-202ENST00000430889 THOC2Q8NI27 1593 aaKnown RBP20.91■□□□□ 0.94
HOXC4-202ENST00000430889 PHLDB1Q86UU1 1377 aa20.91■□□□□ 0.94
HOXC4-202ENST00000430889 DHX57Q6P158 1386 aaKnown RBP20.89■□□□□ 0.93
HOXC4-202ENST00000430889 CLSPNQ9HAW4 1339 aa20.88■□□□□ 0.93
HOXC4-202ENST00000430889 ZNF608Q9ULD9 1512 aaPredicted RBP20.87■□□□□ 0.93
HOXC4-202ENST00000430889 IQGAP2Q13576 1575 aa20.86■□□□□ 0.93
HOXC4-202ENST00000430889 EIF4G3O43432 1585 aaKnown RBP20.83■□□□□ 0.92
HOXC4-202ENST00000430889 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP20.81■□□□□ 0.92
HOXC4-202ENST00000430889 UGGT2Q9NYU1 1516 aa20.8■□□□□ 0.92
HOXC4-202ENST00000430889 ERCC6Q03468 1493 aa20.75■□□□□ 0.91
HOXC4-202ENST00000430889 EHBP1L1Q8N3D4 1523 aa20.73■□□□□ 0.91
HOXC4-202ENST00000430889 ARHGEF11O15085 1522 aa20.73■□□□□ 0.91
HOXC4-202ENST00000430889 HECW1Q76N89 1606 aa20.72■□□□□ 0.91
HOXC4-202ENST00000430889 CCDC18Q5T9S5 1454 aa20.71■□□□□ 0.91
HOXC4-202ENST00000430889 SUPT6HQ7KZ85 1726 aaKnown RBP20.71■□□□□ 0.91
HOXC4-202ENST00000430889 RAB3GAP2Q9H2M9 1393 aa20.71■□□□□ 0.91
HOXC4-202ENST00000430889 KIAA0586Q9BVV6 1533 aa20.71■□□□□ 0.91
HOXC4-202ENST00000430889 GRIN2AQ12879 1464 aa20.71■□□□□ 0.91
HOXC4-202ENST00000430889 FGD6Q6ZV73 1430 aa20.7■□□□□ 0.91
HOXC4-202ENST00000430889 MAGI3Q5TCQ9 1506 aa20.7■□□□□ 0.9
HOXC4-202ENST00000430889 MAGI1Q96QZ7 1491 aaPredicted RBP20.69■□□□□ 0.9
HOXC4-202ENST00000430889 SETD5Q9C0A6 1442 aa20.69■□□□□ 0.9
HOXC4-202ENST00000430889 ZNF316A6NFI3 1004 aaPredicted RBP20.69■□□□□ 0.9
HOXC4-202ENST00000430889 ATP1B4Q9UN42 357 aaPredicted RBP20.69■□□□□ 0.9
HOXC4-202ENST00000430889 KIAA0556O60303 1618 aa20.68■□□□□ 0.9
HOXC4-202ENST00000430889 MAPKBP1O60336 1514 aa20.67■□□□□ 0.9
HOXC4-202ENST00000430889 NCOA2Q15596 1464 aa20.67■□□□□ 0.9
HOXC4-202ENST00000430889 MTUS2Q5JR59 1369 aa20.67■□□□□ 0.9
HOXC4-202ENST00000430889 DISP1Q96F81 1524 aa20.66■□□□□ 0.9
HOXC4-202ENST00000430889 DIEXFQ68CQ4 756 aaKnown RBP20.64■□□□□ 0.9
HOXC4-202ENST00000430889 EPRSP07814 1512 aaKnown RBP20.63■□□□□ 0.89
HOXC4-202ENST00000430889 MYOM3Q5VTT5 1437 aa20.63■□□□□ 0.89
HOXC4-202ENST00000430889 ITGAEP38570 1179 aa20.63■□□□□ 0.89
HOXC4-202ENST00000430889 SYNJ2O15056 1496 aa20.61■□□□□ 0.89
HOXC4-202ENST00000430889 CEP170Q5SW79 1584 aa20.61■□□□□ 0.89
HOXC4-202ENST00000430889 FAM50AQ14320 339 aaKnown RBP20.6■□□□□ 0.89
HOXC4-202ENST00000430889 PTPN23Q9H3S7 1636 aa20.57■□□□□ 0.88
HOXC4-202ENST00000430889 TCOF1Q13428 1488 aaKnown RBP20.57■□□□□ 0.88
HOXC4-202ENST00000430889 CDK13Q14004 1512 aaKnown RBP20.56■□□□□ 0.88
HOXC4-202ENST00000430889 NUP160Q12769 1436 aa20.55■□□□□ 0.88
HOXC4-202ENST00000430889 PTPRKQ15262 1439 aa20.55■□□□□ 0.88
HOXC4-202ENST00000430889 RAPGEF6Q8TEU7 1601 aa20.53■□□□□ 0.88
HOXC4-202ENST00000430889 HFM1A2PYH4 1435 aa20.51■□□□□ 0.87
HOXC4-202ENST00000430889 NUP153P49790 1475 aaKnown RBP20.51■□□□□ 0.87
HOXC4-202ENST00000430889 MIA2Q96PC5 1412 aa20.46■□□□□ 0.87
HOXC4-202ENST00000430889 GCC2Q8IWJ2 1684 aa20.45■□□□□ 0.86
HOXC4-202ENST00000430889 NAIPQ13075 1403 aa20.45■□□□□ 0.86
HOXC4-202ENST00000430889 CHMP7Q8WUX9 453 aaPredicted RBP20.42■□□□□ 0.86
HOXC4-202ENST00000430889 AKNAQ7Z591 1439 aa20.42■□□□□ 0.86
HOXC4-202ENST00000430889 UACAQ9BZF9 1416 aa20.39■□□□□ 0.85
HOXC4-202ENST00000430889 ADCY10Q96PN6 1610 aa20.38■□□□□ 0.85
HOXC4-202ENST00000430889 ABCA8O94911 1581 aa20.35■□□□□ 0.85
HOXC4-202ENST00000430889 PLB1Q6P1J6 1458 aa20.34■□□□□ 0.85
HOXC4-202ENST00000430889 CARMIL2Q6F5E8 1435 aa20.34■□□□□ 0.85
HOXC4-202ENST00000430889 DNMT1P26358 1616 aaKnown RBP20.32■□□□□ 0.84
HOXC4-202ENST00000430889 JPH4Q96JJ6 628 aa20.32■□□□□ 0.84
HOXC4-202ENST00000430889 TIMELESSQ9UNS1 1208 aa20.32■□□□□ 0.84
HOXC4-202ENST00000430889 TROQ12816 1431 aaPredicted RBP20.32■□□□□ 0.84
HOXC4-202ENST00000430889 KDM6BO15054 1643 aa20.29■□□□□ 0.84
HOXC4-202ENST00000430889 CHD1O14646 1710 aa20.29■□□□□ 0.84
HOXC4-202ENST00000430889 SIN3AQ96ST3 1273 aa20.29■□□□□ 0.84
HOXC4-202ENST00000430889 ITSN2Q9NZM3 1697 aa20.29■□□□□ 0.84
HOXC4-202ENST00000430889 MIER1Q8N108 512 aa20.27■□□□□ 0.84
HOXC4-202ENST00000430889 KIF14Q15058 1648 aa20.27■□□□□ 0.84
HOXC4-202ENST00000430889 PRG4Q92954 1404 aaPredicted RBP20.26■□□□□ 0.83
HOXC4-202ENST00000430889 DENND4BO75064 1496 aaPredicted RBP20.26■□□□□ 0.83
HOXC4-202ENST00000430889 ARID3CA6NKF2 412 aa20.26■□□□□ 0.83
HOXC4-202ENST00000430889 FBLN2P98095 1184 aa20.26■□□□□ 0.83
HOXC4-202ENST00000430889 DAPK1P53355 1430 aa20.26■□□□□ 0.83
HOXC4-202ENST00000430889 ROCK1Q13464 1354 aa20.25■□□□□ 0.83
HOXC4-202ENST00000430889 SHROOM2Q13796 1616 aa20.25■□□□□ 0.83
HOXC4-202ENST00000430889 CDK11AQ9UQ88 783 aaPredicted RBP20.24■□□□□ 0.83
HOXC4-202ENST00000430889 ABCC5O15440 1437 aa20.23■□□□□ 0.83
HOXC4-202ENST00000430889 ACIN1Q9UKV3 1341 aaKnown RBP20.22■□□□□ 0.83
HOXC4-202ENST00000430889 GPATCH8Q9UKJ3 1502 aaKnown RBP20.21■□□□□ 0.83
HOXC4-202ENST00000430889 KDM5BQ9UGL1 1544 aa20.21■□□□□ 0.83
HOXC4-202ENST00000430889 CROCC2H7BZ55 1655 aa20.2■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 11.4 ms