RNA–Protein interactions for RNA: ENST00000429102.6

CDH3-202, Transcript of cadherin 3, humanhuman

TSL 1 (best) BASIC

Gene CDH3, Length 3,611 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-202ENST00000429102 PRXQ9BXM0 1461 aa17.58■□□□□ 0.41
CDH3-202ENST00000429102 PHLDB1Q86UU1 1377 aa17.57■□□□□ 0.4
CDH3-202ENST00000429102 ARHGAP35Q9NRY4 1499 aa17.57■□□□□ 0.4
CDH3-202ENST00000429102 ANP32EQ9BTT0 268 aa17.56■□□□□ 0.4
CDH3-202ENST00000429102 RRP7BPQ9NSQ0 103 aa17.55■□□□□ 0.4
CDH3-202ENST00000429102 SETD5Q9C0A6 1442 aa17.54■□□□□ 0.4
CDH3-202ENST00000429102 ERICH6Q7L0X2 663 aa17.54■□□□□ 0.4
CDH3-202ENST00000429102 CARMIL1Q5VZK9 1371 aa17.54■□□□□ 0.4
CDH3-202ENST00000429102 TONSLQ96HA7 1378 aa17.52■□□□□ 0.4
CDH3-202ENST00000429102 RRBP1Q9P2E9 1410 aaKnown RBP17.52■□□□□ 0.4
CDH3-202ENST00000429102 RBM19Q9Y4C8 960 aaKnown RBP17.52■□□□□ 0.4
CDH3-202ENST00000429102 CUX1P39880 1505 aa17.51■□□□□ 0.39
CDH3-202ENST00000429102 IGF1RP08069 1367 aa17.51■□□□□ 0.39
CDH3-202ENST00000429102 PPP1R15AO75807 674 aaPredicted RBP17.5■□□□□ 0.39
CDH3-202ENST00000429102 FOXD1Q16676 465 aa17.5■□□□□ 0.39
CDH3-202ENST00000429102 TOP2BQ02880 1626 aa17.5■□□□□ 0.39
CDH3-202ENST00000429102 FAM9BQ8IZU0 186 aa17.49■□□□□ 0.39
CDH3-202ENST00000429102 FHOD3Q2V2M9 1422 aa17.48■□□□□ 0.39
CDH3-202ENST00000429102 WDR97A6NE52 1622 aa17.48■□□□□ 0.39
CDH3-202ENST00000429102 ZNF326Q5BKZ1 582 aaKnown RBP17.43■□□□□ 0.38
CDH3-202ENST00000429102 MAPKBP1O60336 1514 aa17.39■□□□□ 0.38
CDH3-202ENST00000429102 MTUS2Q5JR59 1369 aa17.39■□□□□ 0.37
CDH3-202ENST00000429102 PEG3Q9GZU2 1588 aa17.39■□□□□ 0.37
CDH3-202ENST00000429102 CCDC184Q52MB2 194 aa17.37■□□□□ 0.37
CDH3-202ENST00000429102 ERICH3Q5RHP9 1530 aa17.37■□□□□ 0.37
CDH3-202ENST00000429102 DNAJC5BQ9UF47 199 aa17.35■□□□□ 0.37
CDH3-202ENST00000429102 LRRC9Q6ZRR7 1453 aa17.35■□□□□ 0.37
CDH3-202ENST00000429102 BCL11AQ9H165 835 aa17.34■□□□□ 0.37
CDH3-202ENST00000429102 B4GALNT3Q6L9W6 998 aa17.34■□□□□ 0.37
CDH3-202ENST00000429102 HSPA5P11021 654 aaKnown RBP17.33■□□□□ 0.37
CDH3-202ENST00000429102 CDK11AQ9UQ88 783 aaPredicted RBP17.33■□□□□ 0.36
CDH3-202ENST00000429102 RAD54L2Q9Y4B4 1467 aa17.33■□□□□ 0.36
CDH3-202ENST00000429102 FGD5Q6ZNL6 1462 aa17.29■□□□□ 0.36
CDH3-202ENST00000429102 TDRD9Q8NDG6 1382 aaKnown RBP17.29■□□□□ 0.36
CDH3-202ENST00000429102 MRS2Q9HD23 443 aa17.29■□□□□ 0.36
CDH3-202ENST00000429102 CCER2I3L3R5 266 aa17.28■□□□□ 0.36
CDH3-202ENST00000429102 MSH5O43196 834 aa17.27■□□□□ 0.36
CDH3-202ENST00000429102 SALL2Q9Y467 1007 aaPredicted RBP17.27■□□□□ 0.35
CDH3-202ENST00000429102 CFTRP13569 1480 aa17.26■□□□□ 0.35
CDH3-202ENST00000429102 TIAM1Q13009 1591 aa17.25■□□□□ 0.35
CDH3-202ENST00000429102 CADPSQ9ULU8 1353 aa17.25■□□□□ 0.35
CDH3-202ENST00000429102 FHAD1B1AJZ9 1412 aa17.25■□□□□ 0.35
CDH3-202ENST00000429102 NCAPD3P42695 1498 aa17.24■□□□□ 0.35
CDH3-202ENST00000429102 BIVM-ERCC5R4GMW8 1640 aa17.23■□□□□ 0.35
CDH3-202ENST00000429102 EIF4G2P78344 907 aaKnown RBP eCLIP17.22■□□□□ 0.35
CDH3-202ENST00000429102 WASHC2AQ641Q2 1341 aa17.22■□□□□ 0.35
CDH3-202ENST00000429102 ZNF777Q9ULD5 760 aaPredicted RBP17.22■□□□□ 0.35
CDH3-202ENST00000429102 L3MBTL2Q969R5 705 aa17.21■□□□□ 0.35
CDH3-202ENST00000429102 C11orf95C9JLR9 678 aaPredicted RBP17.21■□□□□ 0.35
CDH3-202ENST00000429102 NBR1Q14596 966 aa17.21■□□□□ 0.35
CDH3-202ENST00000429102 PTPRKQ15262 1439 aa17.19■□□□□ 0.34
CDH3-202ENST00000429102 CCDC18Q5T9S5 1454 aa17.17■□□□□ 0.34
CDH3-202ENST00000429102 TIMELESSQ9UNS1 1208 aa17.16■□□□□ 0.34
CDH3-202ENST00000429102 PCF11O94913 1555 aaKnown RBP17.15■□□□□ 0.34
CDH3-202ENST00000429102 AQRO60306 1485 aaKnown RBP eCLIP17.14■□□□□ 0.34
CDH3-202ENST00000429102 MPHOSPH9Q99550 1183 aa17.14■□□□□ 0.33
CDH3-202ENST00000429102 FGD6Q6ZV73 1430 aa17.14■□□□□ 0.33
CDH3-202ENST00000429102 NESP48681 1621 aa17.13■□□□□ 0.33
CDH3-202ENST00000429102 SLC4A1APQ9BWU0 796 aaKnown RBP17.13■□□□□ 0.33
CDH3-202ENST00000429102 ZNF644Q9H582 1327 aaPredicted RBP17.11■□□□□ 0.33
CDH3-202ENST00000429102 KDM2AQ9Y2K7 1162 aa17.11■□□□□ 0.33
CDH3-202ENST00000429102 FANCD2Q9BXW9 1451 aa17.1■□□□□ 0.33
CDH3-202ENST00000429102 FBLN2P98095 1184 aa17.09■□□□□ 0.33
CDH3-202ENST00000429102 NBPF8Q3BBV2 869 aa17.08■□□□□ 0.33
CDH3-202ENST00000429102 NPM2Q86SE8 214 aaKnown RBP17.08■□□□□ 0.33
CDH3-202ENST00000429102 PRKRIP1Q9H875 184 aaPredicted RBP17.07■□□□□ 0.32
CDH3-202ENST00000429102 PPP4R2Q9NY27 417 aa17.06■□□□□ 0.32
CDH3-202ENST00000429102 NAIPQ13075 1403 aa17.03■□□□□ 0.32
CDH3-202ENST00000429102 UACAQ9BZF9 1416 aa17.03■□□□□ 0.32
CDH3-202ENST00000429102 CASKIN1Q8WXD9 1431 aa17.02■□□□□ 0.32
CDH3-202ENST00000429102 CCDC136Q96JN2 1154 aa17.02■□□□□ 0.32
CDH3-202ENST00000429102 HMGXB3Q12766 1538 aa17.02■□□□□ 0.31
CDH3-202ENST00000429102 NCOA2Q15596 1464 aa17.01■□□□□ 0.31
CDH3-202ENST00000429102 FMN1Q68DA7 1419 aa17.01■□□□□ 0.31
CDH3-202ENST00000429102 POLA1P09884 1462 aaPredicted RBP16.99■□□□□ 0.31
CDH3-202ENST00000429102 TMC1Q8TDI8 760 aa16.97■□□□□ 0.31
CDH3-202ENST00000429102 KIF7Q2M1P5 1343 aa16.97■□□□□ 0.31
CDH3-202ENST00000429102 HFM1A2PYH4 1435 aa16.97■□□□□ 0.31
CDH3-202ENST00000429102 PAK3O75914 559 aaPredicted RBP16.96■□□□□ 0.31
CDH3-202ENST00000429102 MYOM3Q5VTT5 1437 aa16.96■□□□□ 0.3
CDH3-202ENST00000429102 FYCO1Q9BQS8 1478 aa16.94■□□□□ 0.3
CDH3-202ENST00000429102 AKNAQ7Z591 1439 aa16.92■□□□□ 0.3
CDH3-202ENST00000429102 CCDC7Q96M83 1385 aa16.92■□□□□ 0.3
CDH3-202ENST00000429102 RGL3Q3MIN7 710 aa16.92■□□□□ 0.3
CDH3-202ENST00000429102 MAP3K1Q13233 1512 aa16.91■□□□□ 0.3
CDH3-202ENST00000429102 DEKP35659 375 aaKnown RBP16.91■□□□□ 0.3
CDH3-202ENST00000429102 TOPBP1Q92547 1522 aa16.9■□□□□ 0.3
CDH3-202ENST00000429102 PKD2Q13563 968 aa16.9■□□□□ 0.3
CDH3-202ENST00000429102 CFDP1Q9UEE9 299 aaPredicted RBP16.88■□□□□ 0.29
CDH3-202ENST00000429102 SKAP1Q86WV1 359 aa16.87■□□□□ 0.29
CDH3-202ENST00000429102 FANCIQ9NVI1 1328 aa16.87■□□□□ 0.29
CDH3-202ENST00000429102 CNTLNQ9NXG0 1405 aa16.86■□□□□ 0.29
CDH3-202ENST00000429102 PTPN23Q9H3S7 1636 aa16.86■□□□□ 0.29
CDH3-202ENST00000429102 CARD11Q9BXL7 1154 aa16.86■□□□□ 0.29
CDH3-202ENST00000429102 RTN4Q9NQC3 1192 aaKnown RBP16.86■□□□□ 0.29
CDH3-202ENST00000429102 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.85■□□□□ 0.29
CDH3-202ENST00000429102 NOP58Q9Y2X3 529 aaKnown RBP16.85■□□□□ 0.29
CDH3-202ENST00000429102 PDS5BQ9NTI5 1447 aa16.85■□□□□ 0.29
CDH3-202ENST00000429102 ZBED9Q6R2W3 1325 aa16.84■□□□□ 0.29
CDH3-202ENST00000429102 CDK13Q14004 1512 aaKnown RBP16.84■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 58.7 ms