RNA–Protein interactions for RNA: ENST00000428828.1

CECR3-201, Transcript of cat eye syndrome chromosome region, candidate 3, humanhuman

TSL 1 (best) BASIC

Gene CECR3, Length 1,915 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CECR3-201ENST00000428828 LOC105371045A0A1W2PR82 267 aa18.08■□□□□ 0.49
CECR3-201ENST00000428828 CEP170Q5SW79 1584 aa18.04■□□□□ 0.48
CECR3-201ENST00000428828 UBTFP17480 764 aaKnown RBP18.04■□□□□ 0.48
CECR3-201ENST00000428828 NUP160Q12769 1436 aa17.96■□□□□ 0.47
CECR3-201ENST00000428828 IQGAP2Q13576 1575 aa17.95■□□□□ 0.46
CECR3-201ENST00000428828 RANGAP1P46060 587 aaPredicted RBP17.94■□□□□ 0.46
CECR3-201ENST00000428828 PPARGC1BQ86YN6 1023 aaKnown RBP17.91■□□□□ 0.46
CECR3-201ENST00000428828 TNIKQ9UKE5 1360 aa17.91■□□□□ 0.46
CECR3-201ENST00000428828 CLASP1Q7Z460 1538 aa17.9■□□□□ 0.46
CECR3-201ENST00000428828 KIAA0586Q9BVV6 1533 aa17.9■□□□□ 0.46
CECR3-201ENST00000428828 OSCARQ8IYS5 282 aa17.88■□□□□ 0.45
CECR3-201ENST00000428828 PCGF6Q9BYE7 350 aa17.86■□□□□ 0.45
CECR3-201ENST00000428828 CEP162Q5TB80 1403 aa17.83■□□□□ 0.45
CECR3-201ENST00000428828 SHROOM2Q13796 1616 aa17.83■□□□□ 0.44
CECR3-201ENST00000428828 UGGT2Q9NYU1 1516 aa17.8■□□□□ 0.44
CECR3-201ENST00000428828 CLIP1P30622 1438 aa17.79■□□□□ 0.44
CECR3-201ENST00000428828 SAMD9Q5K651 1589 aa17.79■□□□□ 0.44
CECR3-201ENST00000428828 SCAF1Q9H7N4 1312 aaKnown RBP17.78■□□□□ 0.44
CECR3-201ENST00000428828 JPH4Q96JJ6 628 aa17.78■□□□□ 0.44
CECR3-201ENST00000428828 KIAA0556O60303 1618 aa17.77■□□□□ 0.44
CECR3-201ENST00000428828 P3H3Q8IVL6 736 aa17.76■□□□□ 0.43
CECR3-201ENST00000428828 ERCC6L2Q5T890 1561 aa17.76■□□□□ 0.43
CECR3-201ENST00000428828 EFCAB5A4FU69 1503 aa17.76■□□□□ 0.43
CECR3-201ENST00000428828 PRG4Q92954 1404 aaPredicted RBP17.75■□□□□ 0.43
CECR3-201ENST00000428828 ARHGAP35Q9NRY4 1499 aa17.75■□□□□ 0.43
CECR3-201ENST00000428828 DISP1Q96F81 1524 aa17.75■□□□□ 0.43
CECR3-201ENST00000428828 FHOD3Q2V2M9 1422 aa17.72■□□□□ 0.43
CECR3-201ENST00000428828 TTBK1Q5TCY1 1321 aaPredicted RBP17.71■□□□□ 0.43
CECR3-201ENST00000428828 CARMIL2Q6F5E8 1435 aa17.71■□□□□ 0.43
CECR3-201ENST00000428828 ARAP1Q96P48 1450 aa17.69■□□□□ 0.42
CECR3-201ENST00000428828 ZEB1P37275 1124 aaPredicted RBP17.68■□□□□ 0.42
CECR3-201ENST00000428828 RIMBP3CA6NJZ7 1639 aa17.66■□□□□ 0.42
CECR3-201ENST00000428828 RIMBP3BA6NNM3 1639 aa17.66■□□□□ 0.42
CECR3-201ENST00000428828 RIMBP3Q9UFD9 1639 aa17.66■□□□□ 0.42
CECR3-201ENST00000428828 ARHGEF11O15085 1522 aa17.65■□□□□ 0.42
CECR3-201ENST00000428828 PCF11O94913 1555 aaKnown RBP17.59■□□□□ 0.41
CECR3-201ENST00000428828 PTPRGP23470 1445 aa17.57■□□□□ 0.4
CECR3-201ENST00000428828 FMN1Q68DA7 1419 aa17.57■□□□□ 0.4
CECR3-201ENST00000428828 RAPGEF6Q8TEU7 1601 aa17.56■□□□□ 0.4
CECR3-201ENST00000428828 VPS8Q8N3P4 1428 aa17.56■□□□□ 0.4
CECR3-201ENST00000428828 LRRIQ1Q96JM4 1722 aa17.55■□□□□ 0.4
CECR3-201ENST00000428828 PLB1Q6P1J6 1458 aa17.54■□□□□ 0.4
CECR3-201ENST00000428828 ATP1B4Q9UN42 357 aaPredicted RBP17.53■□□□□ 0.4
CECR3-201ENST00000428828 HECW1Q76N89 1606 aa17.51■□□□□ 0.39
CECR3-201ENST00000428828 ABCA8O94911 1581 aa17.51■□□□□ 0.39
CECR3-201ENST00000428828 FYCO1Q9BQS8 1478 aa17.49■□□□□ 0.39
CECR3-201ENST00000428828 TRIM26Q12899 539 aaPredicted RBP17.49■□□□□ 0.39
CECR3-201ENST00000428828 CASKIN1Q8WXD9 1431 aa17.48■□□□□ 0.39
CECR3-201ENST00000428828 ADCY10Q96PN6 1610 aa17.48■□□□□ 0.39
CECR3-201ENST00000428828 ARID3CA6NKF2 412 aa17.48■□□□□ 0.39
CECR3-201ENST00000428828 UACAQ9BZF9 1416 aa17.47■□□□□ 0.39
CECR3-201ENST00000428828 ABCC2Q92887 1545 aa17.47■□□□□ 0.39
CECR3-201ENST00000428828 CYB5RLQ6IPT4 315 aa17.46■□□□□ 0.39
CECR3-201ENST00000428828 NUP153P49790 1475 aaKnown RBP17.45■□□□□ 0.38
CECR3-201ENST00000428828 DNAJC5Q9H3Z4 198 aa17.44■□□□□ 0.38
CECR3-201ENST00000428828 CFAP43Q8NDM7 1665 aa17.43■□□□□ 0.38
CECR3-201ENST00000428828 CDK13Q14004 1512 aaKnown RBP17.43■□□□□ 0.38
CECR3-201ENST00000428828 ZCCHC11Q5TAX3 1644 aaKnown RBP17.41■□□□□ 0.38
CECR3-201ENST00000428828 EPRSP07814 1512 aaKnown RBP17.4■□□□□ 0.38
CECR3-201ENST00000428828 TIAM1Q13009 1591 aa17.39■□□□□ 0.37
CECR3-201ENST00000428828 UHRF1BP1LA0JNW5 1464 aa17.39■□□□□ 0.37
CECR3-201ENST00000428828 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.39■□□□□ 0.37
CECR3-201ENST00000428828 HNRNPUL2Q1KMD3 747 aaKnown RBP17.39■□□□□ 0.37
CECR3-201ENST00000428828 CCDC18Q5T9S5 1454 aa17.38■□□□□ 0.37
CECR3-201ENST00000428828 APLP2Q06481 763 aa17.37■□□□□ 0.37
CECR3-201ENST00000428828 ACIN1Q9UKV3 1341 aaKnown RBP17.36■□□□□ 0.37
CECR3-201ENST00000428828 ATP10BO94823 1461 aa17.35■□□□□ 0.37
CECR3-201ENST00000428828 KDM5BQ9UGL1 1544 aa17.34■□□□□ 0.37
CECR3-201ENST00000428828 MAGI3Q5TCQ9 1506 aa17.3■□□□□ 0.36
CECR3-201ENST00000428828 MAP3K1Q13233 1512 aa17.29■□□□□ 0.36
CECR3-201ENST00000428828 NPM1P06748 294 aaKnown RBP eCLIP17.29■□□□□ 0.36
CECR3-201ENST00000428828 KANK4Q5T7N3 995 aaPredicted RBP17.27■□□□□ 0.36
CECR3-201ENST00000428828 LRRC9Q6ZRR7 1453 aa17.27■□□□□ 0.35
CECR3-201ENST00000428828 MTUS2Q5JR59 1369 aa17.26■□□□□ 0.35
CECR3-201ENST00000428828 EHBP1L1Q8N3D4 1523 aa17.26■□□□□ 0.35
CECR3-201ENST00000428828 KIF14Q15058 1648 aa17.24■□□□□ 0.35
CECR3-201ENST00000428828 SUPT6HQ7KZ85 1726 aaKnown RBP17.24■□□□□ 0.35
CECR3-201ENST00000428828 CDK11AQ9UQ88 783 aaPredicted RBP17.23■□□□□ 0.35
CECR3-201ENST00000428828 ASXL2Q76L83 1435 aa17.23■□□□□ 0.35
CECR3-201ENST00000428828 PLEKHD1A6NEE1 506 aa17.22■□□□□ 0.35
CECR3-201ENST00000428828 MAPKBP1O60336 1514 aa17.21■□□□□ 0.35
CECR3-201ENST00000428828 WDR7Q9Y4E6 1490 aa17.21■□□□□ 0.35
CECR3-201ENST00000428828 TROQ12816 1431 aaPredicted RBP17.21■□□□□ 0.35
CECR3-201ENST00000428828 KCNH8Q96L42 1107 aa17.19■□□□□ 0.34
CECR3-201ENST00000428828 TTC37Q6PGP7 1564 aa17.16■□□□□ 0.34
CECR3-201ENST00000428828 NCOA2Q15596 1464 aa17.15■□□□□ 0.34
CECR3-201ENST00000428828 CENPBP07199 599 aaPredicted RBP17.15■□□□□ 0.34
CECR3-201ENST00000428828 CDC42BPAQ5VT25 1732 aa17.14■□□□□ 0.33
CECR3-201ENST00000428828 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP17.14■□□□□ 0.33
CECR3-201ENST00000428828 KIF13AQ9H1H9 1805 aa17.13■□□□□ 0.33
CECR3-201ENST00000428828 MYO5CQ9NQX4 1742 aa17.13■□□□□ 0.33
CECR3-201ENST00000428828 NEUROD1Q13562 356 aa17.13■□□□□ 0.33
CECR3-201ENST00000428828 DIP2BQ9P265 1576 aa17.12■□□□□ 0.33
CECR3-201ENST00000428828 ITSN2Q9NZM3 1697 aa17.12■□□□□ 0.33
CECR3-201ENST00000428828 TSPOAP1O95153 1857 aa17.11■□□□□ 0.33
CECR3-201ENST00000428828 ABCA9Q8IUA7 1624 aa17.1■□□□□ 0.33
CECR3-201ENST00000428828 CDC42BPBQ9Y5S2 1711 aa17.09■□□□□ 0.33
CECR3-201ENST00000428828 ABCC10Q5T3U5 1492 aa17.09■□□□□ 0.33
CECR3-201ENST00000428828 PHLDB1Q86UU1 1377 aa17.09■□□□□ 0.33
CECR3-201ENST00000428828 PREX2Q70Z35 1606 aa17.08■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms