RNA–Protein interactions for RNA: ENST00000428776.1

HMGB3P4-201, Transcript of high mobility group box 3 pseudogene 4, humanhuman

BASIC

Gene HMGB3P4, Length 514 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3P4-201ENST00000428776 CHMP7Q8WUX9 453 aaPredicted RBP20.22■□□□□ 0.83
HMGB3P4-201ENST00000428776 IQGAP2Q13576 1575 aa20.19■□□□□ 0.82
HMGB3P4-201ENST00000428776 RANGAP1P46060 587 aaPredicted RBP20.16■□□□□ 0.82
HMGB3P4-201ENST00000428776 CEP170Q5SW79 1584 aa20.16■□□□□ 0.82
HMGB3P4-201ENST00000428776 FBLN2P98095 1184 aa20.15■□□□□ 0.82
HMGB3P4-201ENST00000428776 EFCAB5A4FU69 1503 aa20.15■□□□□ 0.82
HMGB3P4-201ENST00000428776 KIAA0586Q9BVV6 1533 aa20.15■□□□□ 0.82
HMGB3P4-201ENST00000428776 ARHGAP35Q9NRY4 1499 aa20.14■□□□□ 0.81
HMGB3P4-201ENST00000428776 NUP160Q12769 1436 aa20.13■□□□□ 0.81
HMGB3P4-201ENST00000428776 SAMD9Q5K651 1589 aa20.11■□□□□ 0.81
HMGB3P4-201ENST00000428776 ARAP1Q96P48 1450 aa20.1■□□□□ 0.81
HMGB3P4-201ENST00000428776 UGGT2Q9NYU1 1516 aa20.07■□□□□ 0.8
HMGB3P4-201ENST00000428776 VPS8Q8N3P4 1428 aa20.07■□□□□ 0.8
HMGB3P4-201ENST00000428776 FHOD3Q2V2M9 1422 aa19.97■□□□□ 0.79
HMGB3P4-201ENST00000428776 KIAA0556O60303 1618 aa19.97■□□□□ 0.79
HMGB3P4-201ENST00000428776 SHROOM2Q13796 1616 aa19.96■□□□□ 0.79
HMGB3P4-201ENST00000428776 P3H3Q8IVL6 736 aa19.96■□□□□ 0.79
HMGB3P4-201ENST00000428776 CLASP1Q7Z460 1538 aa19.95■□□□□ 0.78
HMGB3P4-201ENST00000428776 DISP1Q96F81 1524 aa19.95■□□□□ 0.78
HMGB3P4-201ENST00000428776 JPH4Q96JJ6 628 aa19.94■□□□□ 0.78
HMGB3P4-201ENST00000428776 FMN1Q68DA7 1419 aa19.93■□□□□ 0.78
HMGB3P4-201ENST00000428776 CARMIL2Q6F5E8 1435 aa19.91■□□□□ 0.78
HMGB3P4-201ENST00000428776 PCF11O94913 1555 aaKnown RBP19.89■□□□□ 0.77
HMGB3P4-201ENST00000428776 FYCO1Q9BQS8 1478 aa19.87■□□□□ 0.77
HMGB3P4-201ENST00000428776 CASKIN1Q8WXD9 1431 aa19.86■□□□□ 0.77
HMGB3P4-201ENST00000428776 APLP2Q06481 763 aa19.86■□□□□ 0.77
HMGB3P4-201ENST00000428776 PRG4Q92954 1404 aaPredicted RBP19.85■□□□□ 0.77
HMGB3P4-201ENST00000428776 MAP3K1Q13233 1512 aa19.83■□□□□ 0.77
HMGB3P4-201ENST00000428776 CFAP43Q8NDM7 1665 aa19.81■□□□□ 0.76
HMGB3P4-201ENST00000428776 OSCARQ8IYS5 282 aa19.81■□□□□ 0.76
HMGB3P4-201ENST00000428776 LRRIQ1Q96JM4 1722 aa19.81■□□□□ 0.76
HMGB3P4-201ENST00000428776 TIAM1Q13009 1591 aa19.79■□□□□ 0.76
HMGB3P4-201ENST00000428776 HECW1Q76N89 1606 aa19.79■□□□□ 0.76
HMGB3P4-201ENST00000428776 RAPGEF6Q8TEU7 1601 aa19.78■□□□□ 0.76
HMGB3P4-201ENST00000428776 PPARGC1BQ86YN6 1023 aaKnown RBP19.74■□□□□ 0.75
HMGB3P4-201ENST00000428776 ERCC6L2Q5T890 1561 aa19.74■□□□□ 0.75
HMGB3P4-201ENST00000428776 ATP1B4Q9UN42 357 aaPredicted RBP19.73■□□□□ 0.75
HMGB3P4-201ENST00000428776 CCDC18Q5T9S5 1454 aa19.72■□□□□ 0.75
HMGB3P4-201ENST00000428776 PTPRGP23470 1445 aa19.7■□□□□ 0.74
HMGB3P4-201ENST00000428776 ABCA8O94911 1581 aa19.7■□□□□ 0.74
HMGB3P4-201ENST00000428776 TTBK1Q5TCY1 1321 aaPredicted RBP19.68■□□□□ 0.74
HMGB3P4-201ENST00000428776 EPRSP07814 1512 aaKnown RBP19.67■□□□□ 0.74
HMGB3P4-201ENST00000428776 TRIM26Q12899 539 aaPredicted RBP19.67■□□□□ 0.74
HMGB3P4-201ENST00000428776 PLB1Q6P1J6 1458 aa19.67■□□□□ 0.74
HMGB3P4-201ENST00000428776 LRRC9Q6ZRR7 1453 aa19.67■□□□□ 0.74
HMGB3P4-201ENST00000428776 KANK4Q5T7N3 995 aaPredicted RBP19.66■□□□□ 0.74
HMGB3P4-201ENST00000428776 NUP153P49790 1475 aaKnown RBP19.66■□□□□ 0.74
HMGB3P4-201ENST00000428776 CDK13Q14004 1512 aaKnown RBP19.6■□□□□ 0.73
HMGB3P4-201ENST00000428776 UACAQ9BZF9 1416 aa19.59■□□□□ 0.73
HMGB3P4-201ENST00000428776 EHBP1L1Q8N3D4 1523 aa19.58■□□□□ 0.73
HMGB3P4-201ENST00000428776 ABCC2Q92887 1545 aa19.57■□□□□ 0.72
HMGB3P4-201ENST00000428776 SUPT6HQ7KZ85 1726 aaKnown RBP19.56■□□□□ 0.72
HMGB3P4-201ENST00000428776 MTUS2Q5JR59 1369 aa19.56■□□□□ 0.72
HMGB3P4-201ENST00000428776 UHRF1BP1LA0JNW5 1464 aa19.55■□□□□ 0.72
HMGB3P4-201ENST00000428776 MAGI3Q5TCQ9 1506 aa19.54■□□□□ 0.72
HMGB3P4-201ENST00000428776 PCGF6Q9BYE7 350 aa19.53■□□□□ 0.72
HMGB3P4-201ENST00000428776 CDK11AQ9UQ88 783 aaPredicted RBP19.53■□□□□ 0.72
HMGB3P4-201ENST00000428776 ATP10BO94823 1461 aa19.53■□□□□ 0.72
HMGB3P4-201ENST00000428776 ARID3CA6NKF2 412 aa19.5■□□□□ 0.71
HMGB3P4-201ENST00000428776 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.5■□□□□ 0.71
HMGB3P4-201ENST00000428776 HNRNPUL2Q1KMD3 747 aaKnown RBP19.5■□□□□ 0.71
HMGB3P4-201ENST00000428776 ARHGEF11O15085 1522 aa19.5■□□□□ 0.71
HMGB3P4-201ENST00000428776 ADCY10Q96PN6 1610 aa19.48■□□□□ 0.71
HMGB3P4-201ENST00000428776 ZCCHC11Q5TAX3 1644 aaKnown RBP19.47■□□□□ 0.71
HMGB3P4-201ENST00000428776 RIMBP3CA6NJZ7 1639 aa19.46■□□□□ 0.71
HMGB3P4-201ENST00000428776 RIMBP3BA6NNM3 1639 aa19.46■□□□□ 0.71
HMGB3P4-201ENST00000428776 RIMBP3Q9UFD9 1639 aa19.46■□□□□ 0.71
HMGB3P4-201ENST00000428776 KDM5BQ9UGL1 1544 aa19.46■□□□□ 0.71
HMGB3P4-201ENST00000428776 TROQ12816 1431 aaPredicted RBP19.45■□□□□ 0.7
HMGB3P4-201ENST00000428776 NCOA2Q15596 1464 aa19.45■□□□□ 0.7
HMGB3P4-201ENST00000428776 RRBP1Q9P2E9 1410 aaKnown RBP19.43■□□□□ 0.7
HMGB3P4-201ENST00000428776 PLEKHD1A6NEE1 506 aa19.43■□□□□ 0.7
HMGB3P4-201ENST00000428776 PHLDB1Q86UU1 1377 aa19.43■□□□□ 0.7
HMGB3P4-201ENST00000428776 KIF14Q15058 1648 aa19.4■□□□□ 0.7
HMGB3P4-201ENST00000428776 MYOM3Q5VTT5 1437 aa19.38■□□□□ 0.69
HMGB3P4-201ENST00000428776 ITSN2Q9NZM3 1697 aa19.37■□□□□ 0.69
HMGB3P4-201ENST00000428776 CCNB3Q8WWL7 1395 aa19.37■□□□□ 0.69
HMGB3P4-201ENST00000428776 FGD6Q6ZV73 1430 aa19.34■□□□□ 0.69
HMGB3P4-201ENST00000428776 CDC42BPAQ5VT25 1732 aa19.34■□□□□ 0.69
HMGB3P4-201ENST00000428776 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP19.32■□□□□ 0.68
HMGB3P4-201ENST00000428776 PTPN23Q9H3S7 1636 aa19.32■□□□□ 0.68
HMGB3P4-201ENST00000428776 MIA2Q96PC5 1412 aa19.31■□□□□ 0.68
HMGB3P4-201ENST00000428776 ABCC10Q5T3U5 1492 aa19.3■□□□□ 0.68
HMGB3P4-201ENST00000428776 NPM1P06748 294 aaKnown RBP eCLIP19.29■□□□□ 0.68
HMGB3P4-201ENST00000428776 MYO5CQ9NQX4 1742 aa19.27■□□□□ 0.68
HMGB3P4-201ENST00000428776 GPATCH8Q9UKJ3 1502 aaKnown RBP19.26■□□□□ 0.67
HMGB3P4-201ENST00000428776 TCOF1Q13428 1488 aaKnown RBP19.26■□□□□ 0.67
HMGB3P4-201ENST00000428776 WDR7Q9Y4E6 1490 aa19.26■□□□□ 0.67
HMGB3P4-201ENST00000428776 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP19.25■□□□□ 0.67
HMGB3P4-201ENST00000428776 CDC42BPBQ9Y5S2 1711 aa19.25■□□□□ 0.67
HMGB3P4-201ENST00000428776 CYB5RLQ6IPT4 315 aa19.25■□□□□ 0.67
HMGB3P4-201ENST00000428776 PREX2Q70Z35 1606 aa19.25■□□□□ 0.67
HMGB3P4-201ENST00000428776 TTC37Q6PGP7 1564 aa19.24■□□□□ 0.67
HMGB3P4-201ENST00000428776 FAM50AQ14320 339 aaKnown RBP19.24■□□□□ 0.67
HMGB3P4-201ENST00000428776 ASXL2Q76L83 1435 aa19.23■□□□□ 0.67
HMGB3P4-201ENST00000428776 KCNH8Q96L42 1107 aa19.2■□□□□ 0.66
HMGB3P4-201ENST00000428776 ABCA9Q8IUA7 1624 aa19.19■□□□□ 0.66
HMGB3P4-201ENST00000428776 CFDP1Q9UEE9 299 aaPredicted RBP19.19■□□□□ 0.66
HMGB3P4-201ENST00000428776 MAPKBP1O60336 1514 aa19.19■□□□□ 0.66
HMGB3P4-201ENST00000428776 CAMSAP2Q08AD1 1489 aa19.16■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms