RNA–Protein interactions for RNA: ENST00000428696.6

SGCE-204, Transcript of sarcoglycan epsilon, humanhuman

TSL 1 (best) BASIC

Gene SGCE, Length 1,409 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SGCE-204ENST00000428696 PRXQ9BXM0 1461 aa23.95■■□□□ 1.42
SGCE-204ENST00000428696 CYB5RLQ6IPT4 315 aa23.91■■□□□ 1.42
SGCE-204ENST00000428696 ARHGEF11O15085 1522 aa23.9■■□□□ 1.42
SGCE-204ENST00000428696 KIAA0586Q9BVV6 1533 aa23.89■■□□□ 1.42
SGCE-204ENST00000428696 UBTFP17480 764 aaKnown RBP23.88■■□□□ 1.41
SGCE-204ENST00000428696 RANGAP1P46060 587 aaPredicted RBP23.88■■□□□ 1.41
SGCE-204ENST00000428696 RIMBP3CA6NJZ7 1639 aa23.86■■□□□ 1.41
SGCE-204ENST00000428696 RIMBP3BA6NNM3 1639 aa23.86■■□□□ 1.41
SGCE-204ENST00000428696 RIMBP3Q9UFD9 1639 aa23.86■■□□□ 1.41
SGCE-204ENST00000428696 TTBK1Q5TCY1 1321 aaPredicted RBP23.86■■□□□ 1.41
SGCE-204ENST00000428696 SENP3Q9H4L4 574 aaPredicted RBP23.85■■□□□ 1.41
SGCE-204ENST00000428696 PRG4Q92954 1404 aaPredicted RBP23.85■■□□□ 1.41
SGCE-204ENST00000428696 IQGAP2Q13576 1575 aa23.76■■□□□ 1.39
SGCE-204ENST00000428696 ERCC6L2Q5T890 1561 aa23.76■■□□□ 1.39
SGCE-204ENST00000428696 SHROOM2Q13796 1616 aa23.73■■□□□ 1.39
SGCE-204ENST00000428696 KIF21BO75037 1637 aa23.72■■□□□ 1.39
SGCE-204ENST00000428696 ARAP1Q96P48 1450 aa23.72■■□□□ 1.39
SGCE-204ENST00000428696 GOLGA3Q08378 1498 aa23.71■■□□□ 1.39
SGCE-204ENST00000428696 CARMIL2Q6F5E8 1435 aa23.71■■□□□ 1.39
SGCE-204ENST00000428696 P3H3Q8IVL6 736 aa23.71■■□□□ 1.39
SGCE-204ENST00000428696 CTTNBP2Q8WZ74 1663 aa23.67■■□□□ 1.38
SGCE-204ENST00000428696 LOC105371045A0A1W2PR82 267 aa23.62■■□□□ 1.37
SGCE-204ENST00000428696 PTPRGP23470 1445 aa23.62■■□□□ 1.37
SGCE-204ENST00000428696 UGGT2Q9NYU1 1516 aa23.61■■□□□ 1.37
SGCE-204ENST00000428696 TNIKQ9UKE5 1360 aa23.6■■□□□ 1.37
SGCE-204ENST00000428696 DISP1Q96F81 1524 aa23.59■■□□□ 1.37
SGCE-204ENST00000428696 NPM1P06748 294 aaKnown RBP eCLIP23.52■■□□□ 1.36
SGCE-204ENST00000428696 KIAA0556O60303 1618 aa23.51■■□□□ 1.35
SGCE-204ENST00000428696 TRHP20396 242 aaPredicted RBP23.43■■□□□ 1.34
SGCE-204ENST00000428696 FHOD3Q2V2M9 1422 aa23.43■■□□□ 1.34
SGCE-204ENST00000428696 ARID3CA6NKF2 412 aa23.42■■□□□ 1.34
SGCE-204ENST00000428696 ATP1B4Q9UN42 357 aaPredicted RBP23.42■■□□□ 1.34
SGCE-204ENST00000428696 UACAQ9BZF9 1416 aa23.41■■□□□ 1.34
SGCE-204ENST00000428696 SAMD9Q5K651 1589 aa23.38■■□□□ 1.33
SGCE-204ENST00000428696 PHF23Q9BUL5 403 aaPredicted RBP23.37■■□□□ 1.33
SGCE-204ENST00000428696 PLB1Q6P1J6 1458 aa23.36■■□□□ 1.33
SGCE-204ENST00000428696 EFCAB5A4FU69 1503 aa23.35■■□□□ 1.33
SGCE-204ENST00000428696 CLIP1P30622 1438 aa23.34■■□□□ 1.33
SGCE-204ENST00000428696 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.34■■□□□ 1.33
SGCE-204ENST00000428696 HNRNPUL2Q1KMD3 747 aaKnown RBP23.34■■□□□ 1.33
SGCE-204ENST00000428696 ADCY10Q96PN6 1610 aa23.34■■□□□ 1.33
SGCE-204ENST00000428696 ARHGAP35Q9NRY4 1499 aa23.33■■□□□ 1.33
SGCE-204ENST00000428696 CEP162Q5TB80 1403 aa23.28■■□□□ 1.32
SGCE-204ENST00000428696 ABCC2Q92887 1545 aa23.28■■□□□ 1.32
SGCE-204ENST00000428696 UHRF1BP1LA0JNW5 1464 aa23.27■■□□□ 1.32
SGCE-204ENST00000428696 ABCA8O94911 1581 aa23.24■■□□□ 1.31
SGCE-204ENST00000428696 FMN1Q68DA7 1419 aa23.23■■□□□ 1.31
SGCE-204ENST00000428696 KCNH8Q96L42 1107 aa23.2■■□□□ 1.3
SGCE-204ENST00000428696 FAM69CQ0P6D2 419 aa23.19■■□□□ 1.3
SGCE-204ENST00000428696 RAPGEF6Q8TEU7 1601 aa23.18■■□□□ 1.3
SGCE-204ENST00000428696 KDM5BQ9UGL1 1544 aa23.17■■□□□ 1.3
SGCE-204ENST00000428696 ASXL2Q76L83 1435 aa23.16■■□□□ 1.3
SGCE-204ENST00000428696 ATP10BO94823 1461 aa23.15■■□□□ 1.3
SGCE-204ENST00000428696 ZCCHC11Q5TAX3 1644 aaKnown RBP23.13■■□□□ 1.29
SGCE-204ENST00000428696 NUP153P49790 1475 aaKnown RBP23.13■■□□□ 1.29
SGCE-204ENST00000428696 PLEKHD1A6NEE1 506 aa23.11■■□□□ 1.29
SGCE-204ENST00000428696 MAPKBP1O60336 1514 aa23.1■■□□□ 1.29
SGCE-204ENST00000428696 CASKIN1Q8WXD9 1431 aa23.06■■□□□ 1.28
SGCE-204ENST00000428696 CDK11AQ9UQ88 783 aaPredicted RBP23.05■■□□□ 1.28
SGCE-204ENST00000428696 ABCC10Q5T3U5 1492 aa23.05■■□□□ 1.28
SGCE-204ENST00000428696 CDK13Q14004 1512 aaKnown RBP23.04■■□□□ 1.28
SGCE-204ENST00000428696 HECW1Q76N89 1606 aa23.03■■□□□ 1.28
SGCE-204ENST00000428696 WDR7Q9Y4E6 1490 aa23.03■■□□□ 1.28
SGCE-204ENST00000428696 PCF11O94913 1555 aaKnown RBP23.01■■□□□ 1.27
SGCE-204ENST00000428696 EPRSP07814 1512 aaKnown RBP23.01■■□□□ 1.27
SGCE-204ENST00000428696 FYCO1Q9BQS8 1478 aa22.98■■□□□ 1.27
SGCE-204ENST00000428696 DIP2BQ9P265 1576 aa22.96■■□□□ 1.27
SGCE-204ENST00000428696 VPS8Q8N3P4 1428 aa22.94■■□□□ 1.26
SGCE-204ENST00000428696 APLP2Q06481 763 aa22.93■■□□□ 1.26
SGCE-204ENST00000428696 CCDC18Q5T9S5 1454 aa22.92■■□□□ 1.26
SGCE-204ENST00000428696 KIF13AQ9H1H9 1805 aa22.91■■□□□ 1.26
SGCE-204ENST00000428696 CD109Q6YHK3 1445 aa22.88■■□□□ 1.25
SGCE-204ENST00000428696 TSPOAP1O95153 1857 aa22.87■■□□□ 1.25
SGCE-204ENST00000428696 GLI2P10070 1586 aa22.85■■□□□ 1.25
SGCE-204ENST00000428696 MTUS2Q5JR59 1369 aa22.85■■□□□ 1.25
SGCE-204ENST00000428696 LRRIQ1Q96JM4 1722 aa22.85■■□□□ 1.25
SGCE-204ENST00000428696 TROQ12816 1431 aaPredicted RBP22.83■■□□□ 1.25
SGCE-204ENST00000428696 MAP3K4Q9Y6R4 1608 aa22.76■■□□□ 1.23
SGCE-204ENST00000428696 MAGI3Q5TCQ9 1506 aa22.76■■□□□ 1.23
SGCE-204ENST00000428696 KANK4Q5T7N3 995 aaPredicted RBP22.75■■□□□ 1.23
SGCE-204ENST00000428696 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP22.75■■□□□ 1.23
SGCE-204ENST00000428696 TEX14Q8IWB6 1497 aa22.74■■□□□ 1.23
SGCE-204ENST00000428696 CFAP43Q8NDM7 1665 aa22.73■■□□□ 1.23
SGCE-204ENST00000428696 KIF14Q15058 1648 aa22.72■■□□□ 1.23
SGCE-204ENST00000428696 ABCA9Q8IUA7 1624 aa22.72■■□□□ 1.23
SGCE-204ENST00000428696 ZNF777Q9ULD5 760 aaPredicted RBP22.71■■□□□ 1.23
SGCE-204ENST00000428696 TIAM1Q13009 1591 aa22.7■■□□□ 1.22
SGCE-204ENST00000428696 PPARGC1BQ86YN6 1023 aaKnown RBP22.7■■□□□ 1.22
SGCE-204ENST00000428696 TTC37Q6PGP7 1564 aa22.69■■□□□ 1.22
SGCE-204ENST00000428696 EFCAB2Q5VUJ9 269 aa22.69■■□□□ 1.22
SGCE-204ENST00000428696 CCNB3Q8WWL7 1395 aa22.67■■□□□ 1.22
SGCE-204ENST00000428696 PLCH2O75038 1416 aa22.66■■□□□ 1.22
SGCE-204ENST00000428696 LRRC9Q6ZRR7 1453 aa22.65■■□□□ 1.22
SGCE-204ENST00000428696 PPRC1Q5VV67 1664 aaKnown RBP22.65■■□□□ 1.22
SGCE-204ENST00000428696 CFDP1Q9UEE9 299 aaPredicted RBP22.65■■□□□ 1.22
SGCE-204ENST00000428696 FANCAO15360 1455 aa22.64■■□□□ 1.21
SGCE-204ENST00000428696 EHBP1L1Q8N3D4 1523 aa22.64■■□□□ 1.21
SGCE-204ENST00000428696 ARHGAP5Q13017 1502 aa22.62■■□□□ 1.21
SGCE-204ENST00000428696 MAP3K1Q13233 1512 aa22.61■■□□□ 1.21
SGCE-204ENST00000428696 RAPGEF3O95398 923 aa22.61■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 300.1 ms