RNA–Protein interactions for RNA: ENST00000428643.1

HMGA1P4-201, Transcript of high mobility group AT-hook 1 pseudogene 4, humanhuman

TSL 2 BASIC

Gene HMGA1P4, Length 334 nt, Biotype antisense RNA, Subcellular localisation Cytoplasm .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P4-201ENST00000428643 CHD1O14646 1710 aa12.82□□□□□ -0.36
HMGA1P4-201ENST00000428643 NUP160Q12769 1436 aa12.79□□□□□ -0.36
HMGA1P4-201ENST00000428643 CEP170Q5SW79 1584 aa12.79□□□□□ -0.36
HMGA1P4-201ENST00000428643 TNIKQ9UKE5 1360 aa12.79□□□□□ -0.36
HMGA1P4-201ENST00000428643 RANGAP1P46060 587 aaPredicted RBP12.75□□□□□ -0.37
HMGA1P4-201ENST00000428643 KIAA0586Q9BVV6 1533 aa12.75□□□□□ -0.37
HMGA1P4-201ENST00000428643 CTTNBP2Q8WZ74 1663 aa12.74□□□□□ -0.37
HMGA1P4-201ENST00000428643 IQGAP2Q13576 1575 aa12.74□□□□□ -0.37
HMGA1P4-201ENST00000428643 CEP162Q5TB80 1403 aa12.72□□□□□ -0.37
HMGA1P4-201ENST00000428643 OSCARQ8IYS5 282 aa12.72□□□□□ -0.37
HMGA1P4-201ENST00000428643 CLASP1Q7Z460 1538 aa12.71□□□□□ -0.38
HMGA1P4-201ENST00000428643 CLIP1P30622 1438 aa12.71□□□□□ -0.38
HMGA1P4-201ENST00000428643 UGGT2Q9NYU1 1516 aa12.67□□□□□ -0.38
HMGA1P4-201ENST00000428643 EFCAB5A4FU69 1503 aa12.66□□□□□ -0.38
HMGA1P4-201ENST00000428643 JPH4Q96JJ6 628 aa12.65□□□□□ -0.38
HMGA1P4-201ENST00000428643 PRG4Q92954 1404 aaPredicted RBP12.64□□□□□ -0.39
HMGA1P4-201ENST00000428643 ARHGAP35Q9NRY4 1499 aa12.64□□□□□ -0.39
HMGA1P4-201ENST00000428643 CARMIL2Q6F5E8 1435 aa12.63□□□□□ -0.39
HMGA1P4-201ENST00000428643 SHROOM2Q13796 1616 aa12.63□□□□□ -0.39
HMGA1P4-201ENST00000428643 P3H3Q8IVL6 736 aa12.63□□□□□ -0.39
HMGA1P4-201ENST00000428643 SAMD9Q5K651 1589 aa12.63□□□□□ -0.39
HMGA1P4-201ENST00000428643 KIAA0556O60303 1618 aa12.62□□□□□ -0.39
HMGA1P4-201ENST00000428643 DISP1Q96F81 1524 aa12.62□□□□□ -0.39
HMGA1P4-201ENST00000428643 FHOD3Q2V2M9 1422 aa12.62□□□□□ -0.39
HMGA1P4-201ENST00000428643 ARAP1Q96P48 1450 aa12.6□□□□□ -0.39
HMGA1P4-201ENST00000428643 TTBK1Q5TCY1 1321 aaPredicted RBP12.59□□□□□ -0.39
HMGA1P4-201ENST00000428643 ERCC6L2Q5T890 1561 aa12.57□□□□□ -0.4
HMGA1P4-201ENST00000428643 FMN1Q68DA7 1419 aa12.54□□□□□ -0.4
HMGA1P4-201ENST00000428643 VPS8Q8N3P4 1428 aa12.54□□□□□ -0.4
HMGA1P4-201ENST00000428643 ARHGEF11O15085 1522 aa12.53□□□□□ -0.4
HMGA1P4-201ENST00000428643 PTPRGP23470 1445 aa12.53□□□□□ -0.4
HMGA1P4-201ENST00000428643 PCF11O94913 1555 aaKnown RBP12.5□□□□□ -0.41
HMGA1P4-201ENST00000428643 RIMBP3CA6NJZ7 1639 aa12.48□□□□□ -0.41
HMGA1P4-201ENST00000428643 RIMBP3BA6NNM3 1639 aa12.48□□□□□ -0.41
HMGA1P4-201ENST00000428643 RIMBP3Q9UFD9 1639 aa12.48□□□□□ -0.41
HMGA1P4-201ENST00000428643 PLB1Q6P1J6 1458 aa12.47□□□□□ -0.41
HMGA1P4-201ENST00000428643 FYCO1Q9BQS8 1478 aa12.47□□□□□ -0.41
HMGA1P4-201ENST00000428643 CASKIN1Q8WXD9 1431 aa12.47□□□□□ -0.41
HMGA1P4-201ENST00000428643 ATP1B4Q9UN42 357 aaPredicted RBP12.47□□□□□ -0.41
HMGA1P4-201ENST00000428643 UACAQ9BZF9 1416 aa12.45□□□□□ -0.42
HMGA1P4-201ENST00000428643 HECW1Q76N89 1606 aa12.44□□□□□ -0.42
HMGA1P4-201ENST00000428643 RAPGEF6Q8TEU7 1601 aa12.44□□□□□ -0.42
HMGA1P4-201ENST00000428643 ABCA8O94911 1581 aa12.44□□□□□ -0.42
HMGA1P4-201ENST00000428643 ARID3CA6NKF2 412 aa12.43□□□□□ -0.42
HMGA1P4-201ENST00000428643 ABCC2Q92887 1545 aa12.42□□□□□ -0.42
HMGA1P4-201ENST00000428643 NUP153P49790 1475 aaKnown RBP12.42□□□□□ -0.42
HMGA1P4-201ENST00000428643 APLP2Q06481 763 aa12.41□□□□□ -0.42
HMGA1P4-201ENST00000428643 UHRF1BP1LA0JNW5 1464 aa12.4□□□□□ -0.42
HMGA1P4-201ENST00000428643 CYB5RLQ6IPT4 315 aa12.4□□□□□ -0.42
HMGA1P4-201ENST00000428643 CCDC18Q5T9S5 1454 aa12.4□□□□□ -0.43
HMGA1P4-201ENST00000428643 EPRSP07814 1512 aaKnown RBP12.38□□□□□ -0.43
HMGA1P4-201ENST00000428643 CDK13Q14004 1512 aaKnown RBP12.38□□□□□ -0.43
HMGA1P4-201ENST00000428643 ADCY10Q96PN6 1610 aa12.38□□□□□ -0.43
HMGA1P4-201ENST00000428643 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.38□□□□□ -0.43
HMGA1P4-201ENST00000428643 HNRNPUL2Q1KMD3 747 aaKnown RBP12.38□□□□□ -0.43
HMGA1P4-201ENST00000428643 TIAM1Q13009 1591 aa12.36□□□□□ -0.43
HMGA1P4-201ENST00000428643 CFAP43Q8NDM7 1665 aa12.35□□□□□ -0.43
HMGA1P4-201ENST00000428643 ATP10BO94823 1461 aa12.34□□□□□ -0.43
HMGA1P4-201ENST00000428643 MAP3K1Q13233 1512 aa12.34□□□□□ -0.43
HMGA1P4-201ENST00000428643 KDM5BQ9UGL1 1544 aa12.34□□□□□ -0.43
HMGA1P4-201ENST00000428643 MTUS2Q5JR59 1369 aa12.32□□□□□ -0.44
HMGA1P4-201ENST00000428643 NPM1P06748 294 aaKnown RBP eCLIP12.32□□□□□ -0.44
HMGA1P4-201ENST00000428643 PPARGC1BQ86YN6 1023 aaKnown RBP12.32□□□□□ -0.44
HMGA1P4-201ENST00000428643 ZCCHC11Q5TAX3 1644 aaKnown RBP12.32□□□□□ -0.44
HMGA1P4-201ENST00000428643 LRRIQ1Q96JM4 1722 aa12.31□□□□□ -0.44
HMGA1P4-201ENST00000428643 CDK11AQ9UQ88 783 aaPredicted RBP12.31□□□□□ -0.44
HMGA1P4-201ENST00000428643 LRRC9Q6ZRR7 1453 aa12.3□□□□□ -0.44
HMGA1P4-201ENST00000428643 EHBP1L1Q8N3D4 1523 aa12.3□□□□□ -0.44
HMGA1P4-201ENST00000428643 KANK4Q5T7N3 995 aaPredicted RBP12.29□□□□□ -0.44
HMGA1P4-201ENST00000428643 TROQ12816 1431 aaPredicted RBP12.28□□□□□ -0.44
HMGA1P4-201ENST00000428643 MAGI3Q5TCQ9 1506 aa12.28□□□□□ -0.44
HMGA1P4-201ENST00000428643 PLEKHD1A6NEE1 506 aa12.27□□□□□ -0.45
HMGA1P4-201ENST00000428643 ASXL2Q76L83 1435 aa12.27□□□□□ -0.45
HMGA1P4-201ENST00000428643 WDR7Q9Y4E6 1490 aa12.27□□□□□ -0.45
HMGA1P4-201ENST00000428643 MAPKBP1O60336 1514 aa12.24□□□□□ -0.45
HMGA1P4-201ENST00000428643 KIF14Q15058 1648 aa12.24□□□□□ -0.45
HMGA1P4-201ENST00000428643 NCOA2Q15596 1464 aa12.22□□□□□ -0.45
HMGA1P4-201ENST00000428643 KCNH8Q96L42 1107 aa12.22□□□□□ -0.45
HMGA1P4-201ENST00000428643 SUPT6HQ7KZ85 1726 aaKnown RBP12.21□□□□□ -0.45
HMGA1P4-201ENST00000428643 CCNB3Q8WWL7 1395 aa12.18□□□□□ -0.46
HMGA1P4-201ENST00000428643 PHLDB1Q86UU1 1377 aa12.18□□□□□ -0.46
HMGA1P4-201ENST00000428643 TTC37Q6PGP7 1564 aa12.17□□□□□ -0.46
HMGA1P4-201ENST00000428643 ABCC10Q5T3U5 1492 aa12.16□□□□□ -0.46
HMGA1P4-201ENST00000428643 MYOM3Q5VTT5 1437 aa12.16□□□□□ -0.46
HMGA1P4-201ENST00000428643 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP12.16□□□□□ -0.46
HMGA1P4-201ENST00000428643 DIP2BQ9P265 1576 aa12.13□□□□□ -0.47
HMGA1P4-201ENST00000428643 FGD6Q6ZV73 1430 aa12.12□□□□□ -0.47
HMGA1P4-201ENST00000428643 GPATCH8Q9UKJ3 1502 aaKnown RBP12.12□□□□□ -0.47
HMGA1P4-201ENST00000428643 ABCA9Q8IUA7 1624 aa12.12□□□□□ -0.47
HMGA1P4-201ENST00000428643 TRHP20396 242 aaPredicted RBP12.12□□□□□ -0.47
HMGA1P4-201ENST00000428643 FAM69CQ0P6D2 419 aa12.12□□□□□ -0.47
HMGA1P4-201ENST00000428643 ARHGAP5Q13017 1502 aa12.11□□□□□ -0.47
HMGA1P4-201ENST00000428643 ITSN2Q9NZM3 1697 aa12.11□□□□□ -0.47
HMGA1P4-201ENST00000428643 CFDP1Q9UEE9 299 aaPredicted RBP12.11□□□□□ -0.47
HMGA1P4-201ENST00000428643 CD109Q6YHK3 1445 aa12.11□□□□□ -0.47
HMGA1P4-201ENST00000428643 GLI2P10070 1586 aa12.1□□□□□ -0.47
HMGA1P4-201ENST00000428643 PREX2Q70Z35 1606 aa12.1□□□□□ -0.47
HMGA1P4-201ENST00000428643 PLCH2O75038 1416 aa12.09□□□□□ -0.47
HMGA1P4-201ENST00000428643 MIA2Q96PC5 1412 aa12.09□□□□□ -0.47
HMGA1P4-201ENST00000428643 RRBP1Q9P2E9 1410 aaKnown RBP12.09□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms