RNA–Protein interactions for RNA: ENST00000423567.1

USP49-204, Transcript of ubiquitin specific peptidase 49, humanhuman

TSL 2

Gene USP49, Length 752 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP49-204ENST00000423567 IGF1RP08069 1367 aa18.58■□□□□ 0.57
USP49-204ENST00000423567 NUP160Q12769 1436 aa18.57■□□□□ 0.56
USP49-204ENST00000423567 CYB5RLQ6IPT4 315 aa18.54■□□□□ 0.56
USP49-204ENST00000423567 CEP170Q5SW79 1584 aa18.52■□□□□ 0.56
USP49-204ENST00000423567 CUL7Q14999 1698 aa18.52■□□□□ 0.56
USP49-204ENST00000423567 CARMIL1Q5VZK9 1371 aa18.5■□□□□ 0.55
USP49-204ENST00000423567 ARAP1Q96P48 1450 aa18.49■□□□□ 0.55
USP49-204ENST00000423567 POTEDQ86YR6 584 aa18.45■□□□□ 0.54
USP49-204ENST00000423567 JPH4Q96JJ6 628 aa18.42■□□□□ 0.54
USP49-204ENST00000423567 RUSC2Q8N2Y8 1516 aa18.41■□□□□ 0.54
USP49-204ENST00000423567 KIAA0586Q9BVV6 1533 aa18.39■□□□□ 0.54
USP49-204ENST00000423567 SHROOM2Q13796 1616 aa18.39■□□□□ 0.53
USP49-204ENST00000423567 PRG4Q92954 1404 aaPredicted RBP18.39■□□□□ 0.53
USP49-204ENST00000423567 RAPGEF2Q9Y4G8 1499 aa18.38■□□□□ 0.53
USP49-204ENST00000423567 ERCC6L2Q5T890 1561 aa18.34■□□□□ 0.53
USP49-204ENST00000423567 CSRNP3Q8WYN3 585 aa18.28■□□□□ 0.52
USP49-204ENST00000423567 EEA1Q15075 1411 aa18.28■□□□□ 0.52
USP49-204ENST00000423567 IQGAP2Q13576 1575 aa18.26■□□□□ 0.51
USP49-204ENST00000423567 PRXQ9BXM0 1461 aa18.26■□□□□ 0.51
USP49-204ENST00000423567 CARMIL2Q6F5E8 1435 aa18.25■□□□□ 0.51
USP49-204ENST00000423567 TRHP20396 242 aaPredicted RBP18.24■□□□□ 0.51
USP49-204ENST00000423567 FAM9AQ8IZU1 332 aaPredicted RBP18.21■□□□□ 0.51
USP49-204ENST00000423567 TNIKQ9UKE5 1360 aa18.17■□□□□ 0.5
USP49-204ENST00000423567 PTPRGP23470 1445 aa18.17■□□□□ 0.5
USP49-204ENST00000423567 TTBK1Q5TCY1 1321 aaPredicted RBP18.17■□□□□ 0.5
USP49-204ENST00000423567 NPM1P06748 294 aaKnown RBP eCLIP18.16■□□□□ 0.5
USP49-204ENST00000423567 UGGT2Q9NYU1 1516 aa18.15■□□□□ 0.5
USP49-204ENST00000423567 CTTNBP2Q8WZ74 1663 aa18.13■□□□□ 0.49
USP49-204ENST00000423567 DISP1Q96F81 1524 aa18.12■□□□□ 0.49
USP49-204ENST00000423567 GOLGA3Q08378 1498 aa18.11■□□□□ 0.49
USP49-204ENST00000423567 KIAA0556O60303 1618 aa18.08■□□□□ 0.48
USP49-204ENST00000423567 SCAF1Q9H7N4 1312 aaKnown RBP18.05■□□□□ 0.48
USP49-204ENST00000423567 ADCY10Q96PN6 1610 aa18.05■□□□□ 0.48
USP49-204ENST00000423567 KIF21BO75037 1637 aa18.04■□□□□ 0.48
USP49-204ENST00000423567 MAPK8IP2Q13387 824 aaPredicted RBP18.03■□□□□ 0.48
USP49-204ENST00000423567 UACAQ9BZF9 1416 aa18.03■□□□□ 0.48
USP49-204ENST00000423567 UHRF1BP1LA0JNW5 1464 aa18■□□□□ 0.47
USP49-204ENST00000423567 MAPKBP1O60336 1514 aa17.99■□□□□ 0.47
USP49-204ENST00000423567 ABCC2Q92887 1545 aa17.99■□□□□ 0.47
USP49-204ENST00000423567 UBTFP17480 764 aaKnown RBP17.99■□□□□ 0.47
USP49-204ENST00000423567 RANGAP1P46060 587 aaPredicted RBP17.98■□□□□ 0.47
USP49-204ENST00000423567 EHMT2Q96KQ7 1210 aa17.98■□□□□ 0.47
USP49-204ENST00000423567 P3H3Q8IVL6 736 aa17.97■□□□□ 0.47
USP49-204ENST00000423567 FAM69CQ0P6D2 419 aa17.94■□□□□ 0.46
USP49-204ENST00000423567 PPP4R3CPQ6ZMV5 832 aa17.93■□□□□ 0.46
USP49-204ENST00000423567 ABCC10Q5T3U5 1492 aa17.93■□□□□ 0.46
USP49-204ENST00000423567 PLB1Q6P1J6 1458 aa17.92■□□□□ 0.46
USP49-204ENST00000423567 SAMD9Q5K651 1589 aa17.91■□□□□ 0.46
USP49-204ENST00000423567 KDM5BQ9UGL1 1544 aa17.91■□□□□ 0.46
USP49-204ENST00000423567 ASXL2Q76L83 1435 aa17.89■□□□□ 0.45
USP49-204ENST00000423567 DMRT2Q9Y5R5 561 aa17.88■□□□□ 0.45
USP49-204ENST00000423567 ABCA8O94911 1581 aa17.87■□□□□ 0.45
USP49-204ENST00000423567 EFCAB5A4FU69 1503 aa17.87■□□□□ 0.45
USP49-204ENST00000423567 DIP2BQ9P265 1576 aa17.87■□□□□ 0.45
USP49-204ENST00000423567 FHOD3Q2V2M9 1422 aa17.85■□□□□ 0.45
USP49-204ENST00000423567 KIF13AQ9H1H9 1805 aa17.84■□□□□ 0.45
USP49-204ENST00000423567 ZCCHC11Q5TAX3 1644 aaKnown RBP17.83■□□□□ 0.45
USP49-204ENST00000423567 ARID3CA6NKF2 412 aa17.8■□□□□ 0.44
USP49-204ENST00000423567 WDR7Q9Y4E6 1490 aa17.79■□□□□ 0.44
USP49-204ENST00000423567 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.78■□□□□ 0.44
USP49-204ENST00000423567 HNRNPUL2Q1KMD3 747 aaKnown RBP17.78■□□□□ 0.44
USP49-204ENST00000423567 RAPGEF6Q8TEU7 1601 aa17.78■□□□□ 0.44
USP49-204ENST00000423567 EPRSP07814 1512 aaKnown RBP17.77■□□□□ 0.44
USP49-204ENST00000423567 GLI2P10070 1586 aa17.76■□□□□ 0.43
USP49-204ENST00000423567 KCNH8Q96L42 1107 aa17.75■□□□□ 0.43
USP49-204ENST00000423567 ATP10BO94823 1461 aa17.75■□□□□ 0.43
USP49-204ENST00000423567 FMN1Q68DA7 1419 aa17.74■□□□□ 0.43
USP49-204ENST00000423567 ARHGAP35Q9NRY4 1499 aa17.74■□□□□ 0.43
USP49-204ENST00000423567 NUP153P49790 1475 aaKnown RBP17.72■□□□□ 0.43
USP49-204ENST00000423567 ATP1B4Q9UN42 357 aaPredicted RBP17.69■□□□□ 0.42
USP49-204ENST00000423567 TSPOAP1O95153 1857 aa17.68■□□□□ 0.42
USP49-204ENST00000423567 PLEKHD1A6NEE1 506 aa17.67■□□□□ 0.42
USP49-204ENST00000423567 TEX14Q8IWB6 1497 aa17.67■□□□□ 0.42
USP49-204ENST00000423567 CLIP1P30622 1438 aa17.65■□□□□ 0.42
USP49-204ENST00000423567 CD109Q6YHK3 1445 aa17.65■□□□□ 0.42
USP49-204ENST00000423567 MAP3K4Q9Y6R4 1608 aa17.65■□□□□ 0.42
USP49-204ENST00000423567 KDM6BO15054 1643 aa17.63■□□□□ 0.41
USP49-204ENST00000423567 HECW1Q76N89 1606 aa17.62■□□□□ 0.41
USP49-204ENST00000423567 CDK11AQ9UQ88 783 aaPredicted RBP17.61■□□□□ 0.41
USP49-204ENST00000423567 CFAP43Q8NDM7 1665 aa17.61■□□□□ 0.41
USP49-204ENST00000423567 PPRC1Q5VV67 1664 aaKnown RBP17.59■□□□□ 0.41
USP49-204ENST00000423567 MAGI3Q5TCQ9 1506 aa17.59■□□□□ 0.41
USP49-204ENST00000423567 CDK13Q14004 1512 aaKnown RBP17.57■□□□□ 0.4
USP49-204ENST00000423567 CASKIN1Q8WXD9 1431 aa17.56■□□□□ 0.4
USP49-204ENST00000423567 ABCA9Q8IUA7 1624 aa17.55■□□□□ 0.4
USP49-204ENST00000423567 CEP162Q5TB80 1403 aa17.54■□□□□ 0.4
USP49-204ENST00000423567 LOC105371045A0A1W2PR82 267 aa17.53■□□□□ 0.4
USP49-204ENST00000423567 CCDC18Q5T9S5 1454 aa17.52■□□□□ 0.4
USP49-204ENST00000423567 CNKSR2Q8WXI2 1034 aa17.52■□□□□ 0.4
USP49-204ENST00000423567 FYCO1Q9BQS8 1478 aa17.51■□□□□ 0.39
USP49-204ENST00000423567 PCF11O94913 1555 aaKnown RBP17.51■□□□□ 0.39
USP49-204ENST00000423567 PHLDB1Q86UU1 1377 aa17.51■□□□□ 0.39
USP49-204ENST00000423567 COL17A1Q9UMD9 1497 aaPredicted RBP17.49■□□□□ 0.39
USP49-204ENST00000423567 TROQ12816 1431 aaPredicted RBP17.47■□□□□ 0.39
USP49-204ENST00000423567 NEO1Q92859 1461 aa17.47■□□□□ 0.39
USP49-204ENST00000423567 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP17.47■□□□□ 0.39
USP49-204ENST00000423567 ARAP3Q8WWN8 1544 aa17.44■□□□□ 0.38
USP49-204ENST00000423567 KIF14Q15058 1648 aa17.43■□□□□ 0.38
USP49-204ENST00000423567 TTC37Q6PGP7 1564 aa17.43■□□□□ 0.38
USP49-204ENST00000423567 FANCAO15360 1455 aa17.42■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms