RNA–Protein interactions for RNA: ENST00000414632.5

VPS41-205, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 548 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-205ENST00000414632 ECM2O94769 699 aaPredicted RBP8.92□□□□□ -0.98
VPS41-205ENST00000414632 PLCD3Q8N3E9 789 aa8.92□□□□□ -0.98
VPS41-205ENST00000414632 TOP2AP11388 1531 aaKnown RBP8.91□□□□□ -0.98
VPS41-205ENST00000414632 OSCARQ8IYS5 282 aa8.91□□□□□ -0.98
VPS41-205ENST00000414632 SSUH2Q9Y2M2 353 aa8.91□□□□□ -0.98
VPS41-205ENST00000414632 VSIG10Q8N0Z9 540 aa8.9□□□□□ -0.98
VPS41-205ENST00000414632 KIF21AQ7Z4S6 1674 aa8.89□□□□□ -0.99
VPS41-205ENST00000414632 BBXQ8WY36 941 aaPredicted RBP8.89□□□□□ -0.99
VPS41-205ENST00000414632 MIER1Q8N108 512 aa8.88□□□□□ -0.99
VPS41-205ENST00000414632 ZBTB4Q9P1Z0 1013 aaPredicted RBP8.88□□□□□ -0.99
VPS41-205ENST00000414632 NPM1P06748 294 aaKnown RBP eCLIP8.87□□□□□ -0.99
VPS41-205ENST00000414632 ERCC6Q03468 1493 aa8.87□□□□□ -0.99
VPS41-205ENST00000414632 LAMC3Q9Y6N6 1575 aa8.86□□□□□ -0.99
VPS41-205ENST00000414632 BCANQ96GW7 911 aa8.85□□□□□ -0.99
VPS41-205ENST00000414632 RGL2O15211 777 aa8.83□□□□□ -1
VPS41-205ENST00000414632 PAXIP1Q6ZW49 1069 aaPredicted RBP8.83□□□□□ -1
VPS41-205ENST00000414632 PRDM2Q13029 1718 aa8.82□□□□□ -1
VPS41-205ENST00000414632 CFAP44Q96MT7 982 aa8.81□□□□□ -1
VPS41-205ENST00000414632 CCDC88BA6NC98 1476 aa8.81□□□□□ -1
VPS41-205ENST00000414632 THOC2Q8NI27 1593 aaKnown RBP8.8□□□□□ -1
VPS41-205ENST00000414632 CADPSQ9ULU8 1353 aa8.79□□□□□ -1
VPS41-205ENST00000414632 SUPT5HO00267 1087 aaKnown RBP8.79□□□□□ -1
VPS41-205ENST00000414632 KDM2AQ9Y2K7 1162 aa8.79□□□□□ -1
VPS41-205ENST00000414632 CIZ1Q9ULV3 898 aaPredicted RBP8.77□□□□□ -1.01
VPS41-205ENST00000414632 PLEKHG5O94827 1062 aa8.76□□□□□ -1.01
VPS41-205ENST00000414632 PDS5BQ9NTI5 1447 aa8.76□□□□□ -1.01
VPS41-205ENST00000414632 PRKCSHP14314 528 aaPredicted RBP8.75□□□□□ -1.01
VPS41-205ENST00000414632 SPRYD3Q8NCJ5 442 aa8.75□□□□□ -1.01
VPS41-205ENST00000414632 ZBTB47Q9UFB7 747 aaPredicted RBP8.75□□□□□ -1.01
VPS41-205ENST00000414632 CFTRP13569 1480 aa8.75□□□□□ -1.01
VPS41-205ENST00000414632 TAOK2Q9UL54 1235 aa8.74□□□□□ -1.01
VPS41-205ENST00000414632 FANCD2Q9BXW9 1451 aa8.73□□□□□ -1.01
VPS41-205ENST00000414632 CUX2O14529 1486 aa8.72□□□□□ -1.01
VPS41-205ENST00000414632 CEP164Q9UPV0 1460 aa8.72□□□□□ -1.01
VPS41-205ENST00000414632 CHGAP10645 457 aaKnown RBP8.72□□□□□ -1.01
VPS41-205ENST00000414632 RBM42Q9BTD8 480 aaKnown RBP8.72□□□□□ -1.01
VPS41-205ENST00000414632 MRC2Q9UBG0 1479 aa8.71□□□□□ -1.01
VPS41-205ENST00000414632 TSHZ2Q9NRE2 1034 aa8.71□□□□□ -1.02
VPS41-205ENST00000414632 WDR62O43379 1518 aa8.69□□□□□ -1.02
VPS41-205ENST00000414632 URB2Q14146 1524 aaKnown RBP8.67□□□□□ -1.02
VPS41-205ENST00000414632 TRIM41Q8WV44 630 aa8.67□□□□□ -1.02
VPS41-205ENST00000414632 GSE1Q14687 1217 aa8.62□□□□□ -1.03
VPS41-205ENST00000414632 TPRNQ4KMQ1 711 aa8.61□□□□□ -1.03
VPS41-205ENST00000414632 HS6ST3Q8IZP7 471 aa8.61□□□□□ -1.03
VPS41-205ENST00000414632 AKT1S1Q96B36 256 aa8.61□□□□□ -1.03
VPS41-205ENST00000414632 DNAJC5Q9H3Z4 198 aa8.61□□□□□ -1.03
VPS41-205ENST00000414632 DNMBPQ6XZF7 1577 aa8.61□□□□□ -1.03
VPS41-205ENST00000414632 TOPBP1Q92547 1522 aa8.6□□□□□ -1.03
VPS41-205ENST00000414632 NUBP1P53384 320 aa8.59□□□□□ -1.03
VPS41-205ENST00000414632 RNF25Q96BH1 459 aaPredicted RBP8.58□□□□□ -1.04
VPS41-205ENST00000414632 DCAF8Q5TAQ9 597 aa8.57□□□□□ -1.04
VPS41-205ENST00000414632 CUX1P39880 1505 aa8.55□□□□□ -1.04
VPS41-205ENST00000414632 ABCC8Q09428 1581 aa8.55□□□□□ -1.04
VPS41-205ENST00000414632 SPDYE1Q8NFV5 336 aaPredicted RBP8.54□□□□□ -1.04
VPS41-205ENST00000414632 TARBP1Q13395 1621 aaKnown RBP8.54□□□□□ -1.04
VPS41-205ENST00000414632 ZNF608Q9ULD9 1512 aaPredicted RBP8.54□□□□□ -1.04
VPS41-205ENST00000414632 EIF4G3O43432 1585 aaKnown RBP8.53□□□□□ -1.04
VPS41-205ENST00000414632 POLA1P09884 1462 aaPredicted RBP8.53□□□□□ -1.04
VPS41-205ENST00000414632 RIOK3O14730 519 aaKnown RBP8.53□□□□□ -1.04
VPS41-205ENST00000414632 FGD5Q6ZNL6 1462 aa8.52□□□□□ -1.05
VPS41-205ENST00000414632 RAD54L2Q9Y4B4 1467 aa8.52□□□□□ -1.05
VPS41-205ENST00000414632 REM2Q8IYK8 340 aaPredicted RBP8.52□□□□□ -1.05
VPS41-205ENST00000414632 IFT140Q96RY7 1462 aa8.51□□□□□ -1.05
VPS41-205ENST00000414632 NKX1-1Q15270 411 aaPredicted RBP8.51□□□□□ -1.05
VPS41-205ENST00000414632 SYNJ1O43426 1573 aa8.51□□□□□ -1.05
VPS41-205ENST00000414632 WDR97A6NE52 1622 aa8.51□□□□□ -1.05
VPS41-205ENST00000414632 BIVM-ERCC5R4GMW8 1640 aa8.5□□□□□ -1.05
VPS41-205ENST00000414632 PRR29P0C7W0 189 aa8.49□□□□□ -1.05
VPS41-205ENST00000414632 NBR1Q14596 966 aa8.49□□□□□ -1.05
VPS41-205ENST00000414632 FAM212AQ96EL1 285 aa8.49□□□□□ -1.05
VPS41-205ENST00000414632 CREBZFQ9NS37 354 aa8.49□□□□□ -1.05
VPS41-205ENST00000414632 CLEC11AQ9Y240 323 aa8.49□□□□□ -1.05
VPS41-205ENST00000414632 GTPBP6O43824 516 aaPredicted RBP8.48□□□□□ -1.05
VPS41-205ENST00000414632 TOP2BQ02880 1626 aa8.47□□□□□ -1.05
VPS41-205ENST00000414632 SOGA1O94964 1423 aa8.47□□□□□ -1.05
VPS41-205ENST00000414632 PBRM1Q86U86 1689 aa8.47□□□□□ -1.05
VPS41-205ENST00000414632 AQRO60306 1485 aaKnown RBP eCLIP8.47□□□□□ -1.05
VPS41-205ENST00000414632 CHD1O14646 1710 aa8.47□□□□□ -1.05
VPS41-205ENST00000414632 STK25O00506 426 aa8.47□□□□□ -1.05
VPS41-205ENST00000414632 MNX1P50219 401 aaPredicted RBP8.47□□□□□ -1.05
VPS41-205ENST00000414632 WRNQ14191 1432 aaPredicted RBP eCLIP8.46□□□□□ -1.05
VPS41-205ENST00000414632 VGFO15240 615 aaPredicted RBP8.46□□□□□ -1.06
VPS41-205ENST00000414632 CHRM1P11229 460 aaPredicted RBP8.46□□□□□ -1.06
VPS41-205ENST00000414632 TDRD9Q8NDG6 1382 aaKnown RBP8.45□□□□□ -1.06
VPS41-205ENST00000414632 RASEFQ8IZ41 740 aa8.44□□□□□ -1.06
VPS41-205ENST00000414632 ABCA5Q8WWZ7 1642 aa8.42□□□□□ -1.06
VPS41-205ENST00000414632 PITPNM1O00562 1244 aa8.41□□□□□ -1.06
VPS41-205ENST00000414632 ABCA10Q8WWZ4 1543 aa8.4□□□□□ -1.06
VPS41-205ENST00000414632 SNAPC4Q5SXM2 1469 aa8.4□□□□□ -1.06
VPS41-205ENST00000414632 SGIP1Q9BQI5 828 aa8.4□□□□□ -1.06
VPS41-205ENST00000414632 BCL11BQ9C0K0 894 aaPredicted RBP8.4□□□□□ -1.06
VPS41-205ENST00000414632 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP8.39□□□□□ -1.07
VPS41-205ENST00000414632 ZFP91Q96JP5 570 aaPredicted RBP8.39□□□□□ -1.07
VPS41-205ENST00000414632 STK24Q9Y6E0 443 aa8.39□□□□□ -1.07
VPS41-205ENST00000414632 GAPVD1Q14C86 1478 aa8.38□□□□□ -1.07
VPS41-205ENST00000414632 PYGBP11216 843 aa8.38□□□□□ -1.07
VPS41-205ENST00000414632 GRIN2BQ13224 1484 aa8.37□□□□□ -1.07
VPS41-205ENST00000414632 RYDENQ9NUL5 291 aaKnown RBP8.36□□□□□ -1.07
VPS41-205ENST00000414632 SP7Q8TDD2 431 aaPredicted RBP8.35□□□□□ -1.07
VPS41-205ENST00000414632 ADAMTS12P58397 1594 aa8.35□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 8.2 ms