RNA–Protein interactions for RNA: ENST00000414220.2

CHD1-202, Transcript of chromodomain helicase DNA binding protein 1, humanhuman

TSL 5

Gene CHD1, Length 434 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD1-202ENST00000414220 KIAA0586Q9BVV6 1533 aa24.55■■□□□ 1.52
CHD1-202ENST00000414220 ARAP1Q96P48 1450 aa24.53■■□□□ 1.52
CHD1-202ENST00000414220 EEA1Q15075 1411 aa24.52■■□□□ 1.52
CHD1-202ENST00000414220 CSRNP3Q8WYN3 585 aa24.51■■□□□ 1.51
CHD1-202ENST00000414220 PRG4Q92954 1404 aaPredicted RBP24.49■■□□□ 1.51
CHD1-202ENST00000414220 SHROOM2Q13796 1616 aa24.47■■□□□ 1.51
CHD1-202ENST00000414220 PRXQ9BXM0 1461 aa24.41■■□□□ 1.5
CHD1-202ENST00000414220 FAM9AQ8IZU1 332 aaPredicted RBP24.4■■□□□ 1.5
CHD1-202ENST00000414220 CARMIL2Q6F5E8 1435 aa24.37■■□□□ 1.49
CHD1-202ENST00000414220 ERCC6L2Q5T890 1561 aa24.37■■□□□ 1.49
CHD1-202ENST00000414220 IQGAP2Q13576 1575 aa24.36■■□□□ 1.49
CHD1-202ENST00000414220 NPM1P06748 294 aaKnown RBP eCLIP24.25■■□□□ 1.47
CHD1-202ENST00000414220 TNIKQ9UKE5 1360 aa24.25■■□□□ 1.47
CHD1-202ENST00000414220 PTPRGP23470 1445 aa24.24■■□□□ 1.47
CHD1-202ENST00000414220 TRHP20396 242 aaPredicted RBP24.23■■□□□ 1.47
CHD1-202ENST00000414220 UGGT2Q9NYU1 1516 aa24.22■■□□□ 1.47
CHD1-202ENST00000414220 TTBK1Q5TCY1 1321 aaPredicted RBP24.22■■□□□ 1.47
CHD1-202ENST00000414220 CTTNBP2Q8WZ74 1663 aa24.2■■□□□ 1.46
CHD1-202ENST00000414220 GOLGA3Q08378 1498 aa24.19■■□□□ 1.46
CHD1-202ENST00000414220 DISP1Q96F81 1524 aa24.15■■□□□ 1.46
CHD1-202ENST00000414220 KIF21BO75037 1637 aa24.14■■□□□ 1.46
CHD1-202ENST00000414220 UBTFP17480 764 aaKnown RBP24.13■■□□□ 1.45
CHD1-202ENST00000414220 KIAA0556O60303 1618 aa24.1■■□□□ 1.45
CHD1-202ENST00000414220 EHMT2Q96KQ7 1210 aa24.06■■□□□ 1.44
CHD1-202ENST00000414220 UACAQ9BZF9 1416 aa24.04■■□□□ 1.44
CHD1-202ENST00000414220 RANGAP1P46060 587 aaPredicted RBP24.04■■□□□ 1.44
CHD1-202ENST00000414220 P3H3Q8IVL6 736 aa24.02■■□□□ 1.44
CHD1-202ENST00000414220 UHRF1BP1LA0JNW5 1464 aa24■■□□□ 1.43
CHD1-202ENST00000414220 ADCY10Q96PN6 1610 aa23.99■■□□□ 1.43
CHD1-202ENST00000414220 ABCC2Q92887 1545 aa23.96■■□□□ 1.43
CHD1-202ENST00000414220 MAPKBP1O60336 1514 aa23.93■■□□□ 1.42
CHD1-202ENST00000414220 SAMD9Q5K651 1589 aa23.91■■□□□ 1.42
CHD1-202ENST00000414220 EFCAB5A4FU69 1503 aa23.89■■□□□ 1.41
CHD1-202ENST00000414220 PLB1Q6P1J6 1458 aa23.88■■□□□ 1.41
CHD1-202ENST00000414220 FAM69CQ0P6D2 419 aa23.88■■□□□ 1.41
CHD1-202ENST00000414220 KDM5BQ9UGL1 1544 aa23.86■■□□□ 1.41
CHD1-202ENST00000414220 ABCC10Q5T3U5 1492 aa23.84■■□□□ 1.41
CHD1-202ENST00000414220 FHOD3Q2V2M9 1422 aa23.83■■□□□ 1.4
CHD1-202ENST00000414220 ABCA8O94911 1581 aa23.82■■□□□ 1.4
CHD1-202ENST00000414220 ASXL2Q76L83 1435 aa23.81■■□□□ 1.4
CHD1-202ENST00000414220 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.78■■□□□ 1.4
CHD1-202ENST00000414220 HNRNPUL2Q1KMD3 747 aaKnown RBP23.78■■□□□ 1.4
CHD1-202ENST00000414220 ZCCHC11Q5TAX3 1644 aaKnown RBP23.75■■□□□ 1.39
CHD1-202ENST00000414220 FMN1Q68DA7 1419 aa23.74■■□□□ 1.39
CHD1-202ENST00000414220 ARID3CA6NKF2 412 aa23.73■■□□□ 1.39
CHD1-202ENST00000414220 DIP2BQ9P265 1576 aa23.73■■□□□ 1.39
CHD1-202ENST00000414220 RAPGEF6Q8TEU7 1601 aa23.72■■□□□ 1.39
CHD1-202ENST00000414220 ARHGAP35Q9NRY4 1499 aa23.71■■□□□ 1.39
CHD1-202ENST00000414220 WDR7Q9Y4E6 1490 aa23.69■■□□□ 1.38
CHD1-202ENST00000414220 KIF13AQ9H1H9 1805 aa23.69■■□□□ 1.38
CHD1-202ENST00000414220 ATP1B4Q9UN42 357 aaPredicted RBP23.69■■□□□ 1.38
CHD1-202ENST00000414220 KCNH8Q96L42 1107 aa23.68■■□□□ 1.38
CHD1-202ENST00000414220 ATP10BO94823 1461 aa23.68■■□□□ 1.38
CHD1-202ENST00000414220 EPRSP07814 1512 aaKnown RBP23.65■■□□□ 1.38
CHD1-202ENST00000414220 CLIP1P30622 1438 aa23.65■■□□□ 1.38
CHD1-202ENST00000414220 GLI2P10070 1586 aa23.65■■□□□ 1.38
CHD1-202ENST00000414220 PLEKHD1A6NEE1 506 aa23.64■■□□□ 1.37
CHD1-202ENST00000414220 NUP153P49790 1475 aaKnown RBP23.63■■□□□ 1.37
CHD1-202ENST00000414220 CDK11AQ9UQ88 783 aaPredicted RBP23.6■■□□□ 1.37
CHD1-202ENST00000414220 LOC105371045A0A1W2PR82 267 aa23.55■■□□□ 1.36
CHD1-202ENST00000414220 HECW1Q76N89 1606 aa23.54■■□□□ 1.36
CHD1-202ENST00000414220 TEX14Q8IWB6 1497 aa23.54■■□□□ 1.36
CHD1-202ENST00000414220 CD109Q6YHK3 1445 aa23.53■■□□□ 1.36
CHD1-202ENST00000414220 TSPOAP1O95153 1857 aa23.51■■□□□ 1.35
CHD1-202ENST00000414220 CEP162Q5TB80 1403 aa23.5■■□□□ 1.35
CHD1-202ENST00000414220 CASKIN1Q8WXD9 1431 aa23.49■■□□□ 1.35
CHD1-202ENST00000414220 MAP3K4Q9Y6R4 1608 aa23.48■■□□□ 1.35
CHD1-202ENST00000414220 CFAP43Q8NDM7 1665 aa23.45■■□□□ 1.34
CHD1-202ENST00000414220 CDK13Q14004 1512 aaKnown RBP23.44■■□□□ 1.34
CHD1-202ENST00000414220 MAGI3Q5TCQ9 1506 aa23.43■■□□□ 1.34
CHD1-202ENST00000414220 CCDC18Q5T9S5 1454 aa23.43■■□□□ 1.34
CHD1-202ENST00000414220 FYCO1Q9BQS8 1478 aa23.42■■□□□ 1.34
CHD1-202ENST00000414220 KDM6BO15054 1643 aa23.41■■□□□ 1.34
CHD1-202ENST00000414220 ABCA9Q8IUA7 1624 aa23.38■■□□□ 1.33
CHD1-202ENST00000414220 PCF11O94913 1555 aaKnown RBP23.38■■□□□ 1.33
CHD1-202ENST00000414220 PHLDB1Q86UU1 1377 aa23.38■■□□□ 1.33
CHD1-202ENST00000414220 PPRC1Q5VV67 1664 aaKnown RBP23.37■■□□□ 1.33
CHD1-202ENST00000414220 TROQ12816 1431 aaPredicted RBP23.34■■□□□ 1.33
CHD1-202ENST00000414220 NEO1Q92859 1461 aa23.29■■□□□ 1.32
CHD1-202ENST00000414220 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP23.28■■□□□ 1.32
CHD1-202ENST00000414220 KIF14Q15058 1648 aa23.26■■□□□ 1.31
CHD1-202ENST00000414220 EFCAB2Q5VUJ9 269 aa23.25■■□□□ 1.31
CHD1-202ENST00000414220 PLCH2O75038 1416 aa23.24■■□□□ 1.31
CHD1-202ENST00000414220 VPS8Q8N3P4 1428 aa23.24■■□□□ 1.31
CHD1-202ENST00000414220 MTUS2Q5JR59 1369 aa23.23■■□□□ 1.31
CHD1-202ENST00000414220 COL17A1Q9UMD9 1497 aaPredicted RBP23.23■■□□□ 1.31
CHD1-202ENST00000414220 ARAP3Q8WWN8 1544 aa23.23■■□□□ 1.31
CHD1-202ENST00000414220 FANCAO15360 1455 aa23.22■■□□□ 1.31
CHD1-202ENST00000414220 LRRIQ1Q96JM4 1722 aa23.22■■□□□ 1.31
CHD1-202ENST00000414220 TTC37Q6PGP7 1564 aa23.21■■□□□ 1.31
CHD1-202ENST00000414220 CFAP74Q9C0B2 1584 aa23.2■■□□□ 1.3
CHD1-202ENST00000414220 AKNAQ7Z591 1439 aa23.2■■□□□ 1.3
CHD1-202ENST00000414220 APLP2Q06481 763 aa23.19■■□□□ 1.3
CHD1-202ENST00000414220 DENND4BO75064 1496 aaPredicted RBP23.14■■□□□ 1.29
CHD1-202ENST00000414220 RAPGEF3O95398 923 aa23.14■■□□□ 1.29
CHD1-202ENST00000414220 MYO5CQ9NQX4 1742 aa23.13■■□□□ 1.29
CHD1-202ENST00000414220 ARHGAP5Q13017 1502 aa23.13■■□□□ 1.29
CHD1-202ENST00000414220 ADGRL1O94910 1474 aa23.11■■□□□ 1.29
CHD1-202ENST00000414220 EHBP1L1Q8N3D4 1523 aa23.1■■□□□ 1.29
CHD1-202ENST00000414220 CCNB3Q8WWL7 1395 aa23.1■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms