RNA–Protein interactions for RNA: ENST00000413601.3

LIMS4-201, Transcript of LIM zinc finger domain containing 4, humanhuman

TSL 1 (best) BASIC

Gene LIMS4, Length 1,215 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS4-201ENST00000413601 CARMIL1Q5VZK9 1371 aa25.25■■□□□ 1.63
LIMS4-201ENST00000413601 JPH4Q96JJ6 628 aa25.18■■□□□ 1.62
LIMS4-201ENST00000413601 PRG4Q92954 1404 aaPredicted RBP25.16■■□□□ 1.62
LIMS4-201ENST00000413601 KIAA0586Q9BVV6 1533 aa25.15■■□□□ 1.62
LIMS4-201ENST00000413601 CHIC1Q5VXU3 224 aa25.12■■□□□ 1.61
LIMS4-201ENST00000413601 RAPGEF2Q9Y4G8 1499 aa25.09■■□□□ 1.61
LIMS4-201ENST00000413601 IQGAP2Q13576 1575 aa25.02■■□□□ 1.6
LIMS4-201ENST00000413601 TRHP20396 242 aaPredicted RBP24.97■■□□□ 1.59
LIMS4-201ENST00000413601 CTTNBP2Q8WZ74 1663 aa24.97■■□□□ 1.59
LIMS4-201ENST00000413601 PRXQ9BXM0 1461 aa24.95■■□□□ 1.58
LIMS4-201ENST00000413601 CARMIL2Q6F5E8 1435 aa24.88■■□□□ 1.57
LIMS4-201ENST00000413601 CSRNP3Q8WYN3 585 aa24.88■■□□□ 1.57
LIMS4-201ENST00000413601 UGGT2Q9NYU1 1516 aa24.86■■□□□ 1.57
LIMS4-201ENST00000413601 ADCY10Q96PN6 1610 aa24.85■■□□□ 1.57
LIMS4-201ENST00000413601 EEA1Q15075 1411 aa24.85■■□□□ 1.57
LIMS4-201ENST00000413601 DISP1Q96F81 1524 aa24.84■■□□□ 1.57
LIMS4-201ENST00000413601 TTBK1Q5TCY1 1321 aaPredicted RBP24.83■■□□□ 1.56
LIMS4-201ENST00000413601 PTPRGP23470 1445 aa24.82■■□□□ 1.56
LIMS4-201ENST00000413601 TNIKQ9UKE5 1360 aa24.81■■□□□ 1.56
LIMS4-201ENST00000413601 FAM9AQ8IZU1 332 aaPredicted RBP24.81■■□□□ 1.56
LIMS4-201ENST00000413601 KIAA0556O60303 1618 aa24.79■■□□□ 1.56
LIMS4-201ENST00000413601 NPM1P06748 294 aaKnown RBP eCLIP24.74■■□□□ 1.55
LIMS4-201ENST00000413601 KIF13AQ9H1H9 1805 aa24.73■■□□□ 1.55
LIMS4-201ENST00000413601 GOLGA3Q08378 1498 aa24.69■■□□□ 1.54
LIMS4-201ENST00000413601 KIF21BO75037 1637 aa24.68■■□□□ 1.54
LIMS4-201ENST00000413601 MAPKBP1O60336 1514 aa24.67■■□□□ 1.54
LIMS4-201ENST00000413601 UACAQ9BZF9 1416 aa24.65■■□□□ 1.54
LIMS4-201ENST00000413601 UHRF1BP1LA0JNW5 1464 aa24.64■■□□□ 1.53
LIMS4-201ENST00000413601 ABCC2Q92887 1545 aa24.63■■□□□ 1.53
LIMS4-201ENST00000413601 ABCC10Q5T3U5 1492 aa24.58■■□□□ 1.53
LIMS4-201ENST00000413601 DIP2BQ9P265 1576 aa24.58■■□□□ 1.52
LIMS4-201ENST00000413601 SAMD9Q5K651 1589 aa24.56■■□□□ 1.52
LIMS4-201ENST00000413601 P3H3Q8IVL6 736 aa24.56■■□□□ 1.52
LIMS4-201ENST00000413601 PLB1Q6P1J6 1458 aa24.55■■□□□ 1.52
LIMS4-201ENST00000413601 ZCCHC11Q5TAX3 1644 aaKnown RBP24.54■■□□□ 1.52
LIMS4-201ENST00000413601 FAM69CQ0P6D2 419 aa24.54■■□□□ 1.52
LIMS4-201ENST00000413601 EHMT2Q96KQ7 1210 aa24.54■■□□□ 1.52
LIMS4-201ENST00000413601 KDM5BQ9UGL1 1544 aa24.53■■□□□ 1.52
LIMS4-201ENST00000413601 ABCA8O94911 1581 aa24.52■■□□□ 1.52
LIMS4-201ENST00000413601 RANGAP1P46060 587 aaPredicted RBP24.52■■□□□ 1.52
LIMS4-201ENST00000413601 ASXL2Q76L83 1435 aa24.5■■□□□ 1.51
LIMS4-201ENST00000413601 TSPOAP1O95153 1857 aa24.49■■□□□ 1.51
LIMS4-201ENST00000413601 UBTFP17480 764 aaKnown RBP24.45■■□□□ 1.5
LIMS4-201ENST00000413601 FHOD3Q2V2M9 1422 aa24.39■■□□□ 1.5
LIMS4-201ENST00000413601 EFCAB5A4FU69 1503 aa24.39■■□□□ 1.49
LIMS4-201ENST00000413601 RAPGEF6Q8TEU7 1601 aa24.39■■□□□ 1.49
LIMS4-201ENST00000413601 GLI2P10070 1586 aa24.38■■□□□ 1.49
LIMS4-201ENST00000413601 EPRSP07814 1512 aaKnown RBP24.35■■□□□ 1.49
LIMS4-201ENST00000413601 ARID3CA6NKF2 412 aa24.34■■□□□ 1.49
LIMS4-201ENST00000413601 WDR7Q9Y4E6 1490 aa24.33■■□□□ 1.49
LIMS4-201ENST00000413601 PPRC1Q5VV67 1664 aaKnown RBP24.33■■□□□ 1.49
LIMS4-201ENST00000413601 MAP3K4Q9Y6R4 1608 aa24.31■■□□□ 1.48
LIMS4-201ENST00000413601 ATP10BO94823 1461 aa24.31■■□□□ 1.48
LIMS4-201ENST00000413601 NUP153P49790 1475 aaKnown RBP24.26■■□□□ 1.47
LIMS4-201ENST00000413601 ARHGAP35Q9NRY4 1499 aa24.26■■□□□ 1.47
LIMS4-201ENST00000413601 KCNH8Q96L42 1107 aa24.25■■□□□ 1.47
LIMS4-201ENST00000413601 KDM6BO15054 1643 aa24.24■■□□□ 1.47
LIMS4-201ENST00000413601 CFAP43Q8NDM7 1665 aa24.22■■□□□ 1.47
LIMS4-201ENST00000413601 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP24.2■■□□□ 1.46
LIMS4-201ENST00000413601 HNRNPUL2Q1KMD3 747 aaKnown RBP24.2■■□□□ 1.46
LIMS4-201ENST00000413601 FMN1Q68DA7 1419 aa24.15■■□□□ 1.46
LIMS4-201ENST00000413601 TEX14Q8IWB6 1497 aa24.14■■□□□ 1.46
LIMS4-201ENST00000413601 CD109Q6YHK3 1445 aa24.14■■□□□ 1.45
LIMS4-201ENST00000413601 HECW1Q76N89 1606 aa24.1■■□□□ 1.45
LIMS4-201ENST00000413601 ABCA9Q8IUA7 1624 aa24.1■■□□□ 1.45
LIMS4-201ENST00000413601 CDK13Q14004 1512 aaKnown RBP24.1■■□□□ 1.45
LIMS4-201ENST00000413601 ATP1B4Q9UN42 357 aaPredicted RBP24.09■■□□□ 1.45
LIMS4-201ENST00000413601 MAGI3Q5TCQ9 1506 aa24.09■■□□□ 1.45
LIMS4-201ENST00000413601 LRRIQ1Q96JM4 1722 aa24.07■■□□□ 1.44
LIMS4-201ENST00000413601 PLEKHD1A6NEE1 506 aa24.06■■□□□ 1.44
LIMS4-201ENST00000413601 COL17A1Q9UMD9 1497 aaPredicted RBP24.06■■□□□ 1.44
LIMS4-201ENST00000413601 CLIP1P30622 1438 aa24.03■■□□□ 1.44
LIMS4-201ENST00000413601 PCF11O94913 1555 aaKnown RBP24■■□□□ 1.43
LIMS4-201ENST00000413601 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP23.96■■□□□ 1.43
LIMS4-201ENST00000413601 CASKIN1Q8WXD9 1431 aa23.95■■□□□ 1.42
LIMS4-201ENST00000413601 TTC37Q6PGP7 1564 aa23.95■■□□□ 1.42
LIMS4-201ENST00000413601 LOC105371045A0A1W2PR82 267 aa23.91■■□□□ 1.42
LIMS4-201ENST00000413601 CDK11AQ9UQ88 783 aaPredicted RBP23.9■■□□□ 1.42
LIMS4-201ENST00000413601 ARAP3Q8WWN8 1544 aa23.89■■□□□ 1.42
LIMS4-201ENST00000413601 FYCO1Q9BQS8 1478 aa23.89■■□□□ 1.42
LIMS4-201ENST00000413601 CEP162Q5TB80 1403 aa23.89■■□□□ 1.41
LIMS4-201ENST00000413601 KIF14Q15058 1648 aa23.88■■□□□ 1.41
LIMS4-201ENST00000413601 CCDC18Q5T9S5 1454 aa23.87■■□□□ 1.41
LIMS4-201ENST00000413601 NEO1Q92859 1461 aa23.87■■□□□ 1.41
LIMS4-201ENST00000413601 PHLDB1Q86UU1 1377 aa23.86■■□□□ 1.41
LIMS4-201ENST00000413601 TROQ12816 1431 aaPredicted RBP23.85■■□□□ 1.41
LIMS4-201ENST00000413601 MYO5CQ9NQX4 1742 aa23.85■■□□□ 1.41
LIMS4-201ENST00000413601 CFAP74Q9C0B2 1584 aa23.84■■□□□ 1.41
LIMS4-201ENST00000413601 FANCAO15360 1455 aa23.81■■□□□ 1.4
LIMS4-201ENST00000413601 PLCH2O75038 1416 aa23.78■■□□□ 1.4
LIMS4-201ENST00000413601 AKNAQ7Z591 1439 aa23.78■■□□□ 1.4
LIMS4-201ENST00000413601 RAPGEF3O95398 923 aa23.78■■□□□ 1.4
LIMS4-201ENST00000413601 FRMPD1Q5SYB0 1578 aa23.78■■□□□ 1.4
LIMS4-201ENST00000413601 RICTORQ6R327 1708 aa23.76■■□□□ 1.39
LIMS4-201ENST00000413601 CDC42BPBQ9Y5S2 1711 aa23.73■■□□□ 1.39
LIMS4-201ENST00000413601 KDM4FA0A1W2PPD8 638 aa23.73■■□□□ 1.39
LIMS4-201ENST00000413601 DENND4BO75064 1496 aaPredicted RBP23.72■■□□□ 1.39
LIMS4-201ENST00000413601 CDC42BPAQ5VT25 1732 aa23.7■■□□□ 1.38
LIMS4-201ENST00000413601 ARHGAP5Q13017 1502 aa23.69■■□□□ 1.38
LIMS4-201ENST00000413601 PREX2Q70Z35 1606 aa23.69■■□□□ 1.38
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms