RNA–Protein interactions for RNA: ENST00000407637.5

HERC3-203, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase 3, humanhuman

TSL 1 (best) BASIC

Gene HERC3, Length 2,634 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC3-203ENST00000407637 HIRIP3Q9BW71 556 aaPredicted RBP17.74■□□□□ 0.43
HERC3-203ENST00000407637 PPP4R2Q9NY27 417 aa17.74■□□□□ 0.43
HERC3-203ENST00000407637 TOP2AP11388 1531 aaKnown RBP17.73■□□□□ 0.43
HERC3-203ENST00000407637 SMARCA2P51531 1590 aa17.73■□□□□ 0.43
HERC3-203ENST00000407637 HNRNPUQ00839 825 aaKnown RBP eCLIP17.72■□□□□ 0.43
HERC3-203ENST00000407637 RRBP1Q9P2E9 1410 aaKnown RBP17.7■□□□□ 0.42
HERC3-203ENST00000407637 B4GALNT3Q6L9W6 998 aa17.69■□□□□ 0.42
HERC3-203ENST00000407637 BAZ1BQ9UIG0 1483 aaKnown RBP17.68■□□□□ 0.42
HERC3-203ENST00000407637 KANK4Q5T7N3 995 aaPredicted RBP17.67■□□□□ 0.42
HERC3-203ENST00000407637 RAPGEF2Q9Y4G8 1499 aa17.66■□□□□ 0.42
HERC3-203ENST00000407637 RAB3GAP2Q9H2M9 1393 aa17.64■□□□□ 0.41
HERC3-203ENST00000407637 SIN3AQ96ST3 1273 aa17.62■□□□□ 0.41
HERC3-203ENST00000407637 IPO9Q96P70 1041 aaKnown RBP17.61■□□□□ 0.41
HERC3-203ENST00000407637 CCNB3Q8WWL7 1395 aa17.6■□□□□ 0.41
HERC3-203ENST00000407637 ANP32AP39687 249 aaKnown RBP17.6■□□□□ 0.41
HERC3-203ENST00000407637 ZBTB47Q9UFB7 747 aaPredicted RBP17.57■□□□□ 0.4
HERC3-203ENST00000407637 WASHC2AQ641Q2 1341 aa17.56■□□□□ 0.4
HERC3-203ENST00000407637 ARAP1Q96P48 1450 aa17.56■□□□□ 0.4
HERC3-203ENST00000407637 SYNJ1O43426 1573 aa17.55■□□□□ 0.4
HERC3-203ENST00000407637 EIF5BO60841 1220 aaKnown RBP17.54■□□□□ 0.4
HERC3-203ENST00000407637 C11orf95C9JLR9 678 aaPredicted RBP17.49■□□□□ 0.39
HERC3-203ENST00000407637 BRPF3Q9ULD4 1205 aa17.47■□□□□ 0.39
HERC3-203ENST00000407637 NEFMP07197 916 aa17.46■□□□□ 0.39
HERC3-203ENST00000407637 PKNOX2Q96KN3 472 aa17.46■□□□□ 0.39
HERC3-203ENST00000407637 SETD5Q9C0A6 1442 aa17.46■□□□□ 0.39
HERC3-203ENST00000407637 WASHC2CQ9Y4E1 1318 aa17.45■□□□□ 0.38
HERC3-203ENST00000407637 LAS1LQ9Y4W2 734 aaKnown RBP17.45■□□□□ 0.38
HERC3-203ENST00000407637 SMARCA4P51532 1647 aa17.44■□□□□ 0.38
HERC3-203ENST00000407637 AEBP2Q6ZN18 517 aaPredicted RBP17.41■□□□□ 0.38
HERC3-203ENST00000407637 TIMELESSQ9UNS1 1208 aa17.41■□□□□ 0.38
HERC3-203ENST00000407637 CCDC184Q52MB2 194 aa17.38■□□□□ 0.37
HERC3-203ENST00000407637 USP35Q9P2H5 1018 aa17.38■□□□□ 0.37
HERC3-203ENST00000407637 NPM2Q86SE8 214 aaKnown RBP17.38■□□□□ 0.37
HERC3-203ENST00000407637 PEG3Q9GZU2 1588 aa17.37■□□□□ 0.37
HERC3-203ENST00000407637 ZBED9Q6R2W3 1325 aa17.34■□□□□ 0.37
HERC3-203ENST00000407637 NCAPD3P42695 1498 aa17.34■□□□□ 0.37
HERC3-203ENST00000407637 FAM9BQ8IZU0 186 aa17.34■□□□□ 0.37
HERC3-203ENST00000407637 AKNAQ7Z591 1439 aa17.32■□□□□ 0.36
HERC3-203ENST00000407637 TONSLQ96HA7 1378 aa17.31■□□□□ 0.36
HERC3-203ENST00000407637 ERICH3Q5RHP9 1530 aa17.3■□□□□ 0.36
HERC3-203ENST00000407637 PPM1GO15355 546 aaPredicted RBP17.27■□□□□ 0.35
HERC3-203ENST00000407637 GSE1Q14687 1217 aa17.27■□□□□ 0.35
HERC3-203ENST00000407637 FAM50AQ14320 339 aaKnown RBP17.25■□□□□ 0.35
HERC3-203ENST00000407637 RSPH6AQ9H0K4 717 aa17.25■□□□□ 0.35
HERC3-203ENST00000407637 MRS2Q9HD23 443 aa17.24■□□□□ 0.35
HERC3-203ENST00000407637 FHAD1B1AJZ9 1412 aa17.24■□□□□ 0.35
HERC3-203ENST00000407637 PRXQ9BXM0 1461 aa17.24■□□□□ 0.35
HERC3-203ENST00000407637 ARHGAP35Q9NRY4 1499 aa17.21■□□□□ 0.35
HERC3-203ENST00000407637 TIAM1Q13009 1591 aa17.21■□□□□ 0.35
HERC3-203ENST00000407637 CNTLNQ9NXG0 1405 aa17.21■□□□□ 0.35
HERC3-203ENST00000407637 PHLDB1Q86UU1 1377 aa17.21■□□□□ 0.35
HERC3-203ENST00000407637 FRAT1Q92837 279 aaPredicted RBP17.2■□□□□ 0.34
HERC3-203ENST00000407637 SMG6Q86US8 1419 aaKnown RBP17.2■□□□□ 0.34
HERC3-203ENST00000407637 NCOA2Q15596 1464 aa17.19■□□□□ 0.34
HERC3-203ENST00000407637 PRKRIP1Q9H875 184 aaPredicted RBP17.18■□□□□ 0.34
HERC3-203ENST00000407637 RNF123Q5XPI4 1314 aa17.17■□□□□ 0.34
HERC3-203ENST00000407637 HSPA5P11021 654 aaKnown RBP17.16■□□□□ 0.34
HERC3-203ENST00000407637 PDE4AP27815 886 aa17.16■□□□□ 0.34
HERC3-203ENST00000407637 NUDCQ9Y266 331 aa17.15■□□□□ 0.34
HERC3-203ENST00000407637 KDM5BQ9UGL1 1544 aa17.15■□□□□ 0.34
HERC3-203ENST00000407637 FAM43AQ8N2R8 423 aa17.15■□□□□ 0.34
HERC3-203ENST00000407637 NFKBIBQ15653 356 aa17.14■□□□□ 0.33
HERC3-203ENST00000407637 TOP2BQ02880 1626 aa17.13■□□□□ 0.33
HERC3-203ENST00000407637 LRRC9Q6ZRR7 1453 aa17.13■□□□□ 0.33
HERC3-203ENST00000407637 GLIPR1L2Q4G1C9 344 aa17.12■□□□□ 0.33
HERC3-203ENST00000407637 ZMYND15Q9H091 742 aa17.12■□□□□ 0.33
HERC3-203ENST00000407637 TCERG1O14776 1098 aaKnown RBP17.11■□□□□ 0.33
HERC3-203ENST00000407637 VSIG10Q8N0Z9 540 aa17.11■□□□□ 0.33
HERC3-203ENST00000407637 BACH2Q9BYV9 841 aa17.11■□□□□ 0.33
HERC3-203ENST00000407637 MAP3K1Q13233 1512 aa17.08■□□□□ 0.33
HERC3-203ENST00000407637 SENP3-EIF4A1A0A087X0R7 540 aa17.07■□□□□ 0.32
HERC3-203ENST00000407637 DCAF11Q8TEB1 546 aa17.07■□□□□ 0.32
HERC3-203ENST00000407637 CCDC18Q5T9S5 1454 aa17.06■□□□□ 0.32
HERC3-203ENST00000407637 BIVM-ERCC5R4GMW8 1640 aa17.04■□□□□ 0.32
HERC3-203ENST00000407637 DDRGK1Q96HY6 314 aa17.04■□□□□ 0.32
HERC3-203ENST00000407637 SLC4A3P48751 1232 aa17.03■□□□□ 0.32
HERC3-203ENST00000407637 EIF4G2P78344 907 aaKnown RBP eCLIP17.03■□□□□ 0.32
HERC3-203ENST00000407637 CCDC7Q96M83 1385 aa17.03■□□□□ 0.32
HERC3-203ENST00000407637 PLEKHG5O94827 1062 aa17.02■□□□□ 0.32
HERC3-203ENST00000407637 CFAP43Q8NDM7 1665 aa17.01■□□□□ 0.31
HERC3-203ENST00000407637 UACAQ9BZF9 1416 aa17.01■□□□□ 0.31
HERC3-203ENST00000407637 NCOA1Q15788 1441 aa17.01■□□□□ 0.31
HERC3-203ENST00000407637 EXOC6Q8TAG9 804 aa17.01■□□□□ 0.31
HERC3-203ENST00000407637 MS4A1P11836 297 aa17■□□□□ 0.31
HERC3-203ENST00000407637 PODXL2Q9NZ53 605 aa16.99■□□□□ 0.31
HERC3-203ENST00000407637 RRAGDQ9NQL2 400 aaPredicted RBP16.98■□□□□ 0.31
HERC3-203ENST00000407637 CNGB1Q14028 1251 aaPredicted RBP16.97■□□□□ 0.31
HERC3-203ENST00000407637 FRAT2O75474 233 aaPredicted RBP16.96■□□□□ 0.31
HERC3-203ENST00000407637 PABPN1Q86U42 306 aaKnown RBP eCLIP16.96■□□□□ 0.31
HERC3-203ENST00000407637 PTPN23Q9H3S7 1636 aa16.96■□□□□ 0.31
HERC3-203ENST00000407637 AQRO60306 1485 aaKnown RBP eCLIP16.96■□□□□ 0.31
HERC3-203ENST00000407637 SKAP1Q86WV1 359 aa16.95■□□□□ 0.3
HERC3-203ENST00000407637 RRP1P56182 461 aaKnown RBP16.95■□□□□ 0.3
HERC3-203ENST00000407637 PCF11O94913 1555 aaKnown RBP16.93■□□□□ 0.3
HERC3-203ENST00000407637 DAXXQ9UER7 740 aaPredicted RBP16.93■□□□□ 0.3
HERC3-203ENST00000407637 ABCA5Q8WWZ7 1642 aa16.92■□□□□ 0.3
HERC3-203ENST00000407637 POLR1AO95602 1720 aaPredicted RBP16.92■□□□□ 0.3
HERC3-203ENST00000407637 HFM1A2PYH4 1435 aa16.91■□□□□ 0.3
HERC3-203ENST00000407637 KIF27Q86VH2 1401 aa16.91■□□□□ 0.3
HERC3-203ENST00000407637 UNC13AQ9UPW8 1703 aa16.9■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 7.7 ms