RNA–Protein interactions for RNA: ENST00000404484.8

TPM1-208, Transcript of tropomyosin 1, human

TSL 1 (best) BASIC

Gene TPM1, Length 1,568 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TPM1-208	ENST00000404484	GOLGA3	Q08378	1498 aa		33.85	■■■■□ 3.01
TPM1-208	ENST00000404484	CARMIL1	Q5VZK9	1371 aa		33.82	■■■■□ 3.01
TPM1-208	ENST00000404484	CYB5RL	Q6IPT4	315 aa		33.79	■■■■□ 3
TPM1-208	ENST00000404484	CUL7	Q14999	1698 aa		33.78	■■■■□ 3
TPM1-208	ENST00000404484	EHMT2	Q96KQ7	1210 aa		33.77	■■■■□ 3
TPM1-208	ENST00000404484	PRX	Q9BXM0	1461 aa		33.74	■■■□□ 2.99
TPM1-208	ENST00000404484	ARAP1	Q96P48	1450 aa		33.71	■■■□□ 2.99
TPM1-208	ENST00000404484	TNIK	Q9UKE5	1360 aa		33.7	■■■□□ 2.98
TPM1-208	ENST00000404484	JPH4	Q96JJ6	628 aa		33.65	■■■□□ 2.98
TPM1-208	ENST00000404484	RAPGEF2	Q9Y4G8	1499 aa		33.64	■■■□□ 2.98
TPM1-208	ENST00000404484	UBTF	P17480	764 aa	Known RBP	33.64	■■■□□ 2.98
TPM1-208	ENST00000404484	SHROOM2	Q13796	1616 aa		33.59	■■■□□ 2.97
TPM1-208	ENST00000404484	ERCC6L2	Q5T890	1561 aa		33.59	■■■□□ 2.97
TPM1-208	ENST00000404484	KIAA0586	Q9BVV6	1533 aa		33.58	■■■□□ 2.97
TPM1-208	ENST00000404484	PRG4	Q92954	1404 aa	Predicted RBP	33.54	■■■□□ 2.96
TPM1-208	ENST00000404484	CEP162	Q5TB80	1403 aa		33.47	■■■□□ 2.95
TPM1-208	ENST00000404484	IQGAP2	Q13576	1575 aa		33.32	■■■□□ 2.92
TPM1-208	ENST00000404484	CLIP1	P30622	1438 aa		33.27	■■■□□ 2.92
TPM1-208	ENST00000404484	CARMIL2	Q6F5E8	1435 aa		33.2	■■■□□ 2.91
TPM1-208	ENST00000404484	UGGT2	Q9NYU1	1516 aa		33.17	■■■□□ 2.9
TPM1-208	ENST00000404484	DISP1	Q96F81	1524 aa		33.16	■■■□□ 2.9
TPM1-208	ENST00000404484	TTBK1	Q5TCY1	1321 aa	Predicted RBP	33.15	■■■□□ 2.9
TPM1-208	ENST00000404484	PTPRG	P23470	1445 aa		33.14	■■■□□ 2.9
TPM1-208	ENST00000404484	CTTNBP2	Q8WZ74	1663 aa		33.13	■■■□□ 2.89
TPM1-208	ENST00000404484	TRH	P20396	242 aa	Predicted RBP	33.09	■■■□□ 2.89
TPM1-208	ENST00000404484	RANGAP1	P46060	587 aa	Predicted RBP	33	■■■□□ 2.87
TPM1-208	ENST00000404484	KIAA0556	O60303	1618 aa		33	■■■□□ 2.87
TPM1-208	ENST00000404484	VPS8	Q8N3P4	1428 aa		32.97	■■■□□ 2.87
TPM1-208	ENST00000404484	ADCY10	Q96PN6	1610 aa		32.97	■■■□□ 2.87
TPM1-208	ENST00000404484	NPM1	P06748	294 aa	Known RBP eCLIP	32.96	■■■□□ 2.87
TPM1-208	ENST00000404484	ARHGAP35	Q9NRY4	1499 aa		32.96	■■■□□ 2.87
TPM1-208	ENST00000404484	EFCAB5	A4FU69	1503 aa		32.93	■■■□□ 2.86
TPM1-208	ENST00000404484	P3H3	Q8IVL6	736 aa		32.91	■■■□□ 2.86
TPM1-208	ENST00000404484	UACA	Q9BZF9	1416 aa		32.88	■■■□□ 2.85
TPM1-208	ENST00000404484	UHRF1BP1L	A0JNW5	1464 aa		32.83	■■■□□ 2.85
TPM1-208	ENST00000404484	ABCC2	Q92887	1545 aa		32.8	■■■□□ 2.84
TPM1-208	ENST00000404484	PLB1	Q6P1J6	1458 aa		32.77	■■■□□ 2.84
TPM1-208	ENST00000404484	SAMD9	Q5K651	1589 aa		32.76	■■■□□ 2.83
TPM1-208	ENST00000404484	MAPKBP1	O60336	1514 aa		32.75	■■■□□ 2.83
TPM1-208	ENST00000404484	KDM5B	Q9UGL1	1544 aa		32.68	■■■□□ 2.82
TPM1-208	ENST00000404484	ABCA8	O94911	1581 aa		32.67	■■■□□ 2.82
TPM1-208	ENST00000404484	APLP2	Q06481	763 aa		32.67	■■■□□ 2.82
TPM1-208	ENST00000404484	FAM69C	Q0P6D2	419 aa		32.67	■■■□□ 2.82
TPM1-208	ENST00000404484	ABCC10	Q5T3U5	1492 aa		32.66	■■■□□ 2.82
TPM1-208	ENST00000404484	FHOD3	Q2V2M9	1422 aa		32.65	■■■□□ 2.82
TPM1-208	ENST00000404484	ASXL2	Q76L83	1435 aa		32.62	■■■□□ 2.81
TPM1-208	ENST00000404484	FMN1	Q68DA7	1419 aa		32.62	■■■□□ 2.81
TPM1-208	ENST00000404484	TRIM26	Q12899	539 aa	Predicted RBP	32.6	■■■□□ 2.81
TPM1-208	ENST00000404484	KIF13A	Q9H1H9	1805 aa		32.59	■■■□□ 2.81
TPM1-208	ENST00000404484	ZCCHC11	Q5TAX3	1644 aa	Known RBP	32.56	■■■□□ 2.8
TPM1-208	ENST00000404484	ARID3C	A6NKF2	412 aa		32.55	■■■□□ 2.8
TPM1-208	ENST00000404484	DIP2B	Q9P265	1576 aa		32.54	■■■□□ 2.8
TPM1-208	ENST00000404484	FYCO1	Q9BQS8	1478 aa		32.51	■■■□□ 2.79
TPM1-208	ENST00000404484	PPARGC1B	Q86YN6	1023 aa	Known RBP	32.49	■■■□□ 2.79
TPM1-208	ENST00000404484	CASKIN1	Q8WXD9	1431 aa		32.49	■■■□□ 2.79
TPM1-208	ENST00000404484	PCF11	O94913	1555 aa	Known RBP	32.49	■■■□□ 2.79
TPM1-208	ENST00000404484	MAP3K1	Q13233	1512 aa		32.48	■■■□□ 2.79
TPM1-208	ENST00000404484	ATP10B	O94823	1461 aa		32.48	■■■□□ 2.79
TPM1-208	ENST00000404484	RAPGEF6	Q8TEU7	1601 aa		32.46	■■■□□ 2.79
TPM1-208	ENST00000404484	PCGF6	Q9BYE7	350 aa		32.43	■■■□□ 2.78
TPM1-208	ENST00000404484	WDR7	Q9Y4E6	1490 aa		32.41	■■■□□ 2.78
TPM1-208	ENST00000404484	EPRS	P07814	1512 aa	Known RBP	32.41	■■■□□ 2.78
TPM1-208	ENST00000404484	NUP153	P49790	1475 aa	Known RBP	32.41	■■■□□ 2.78
TPM1-208	ENST00000404484	KCNH8	Q96L42	1107 aa		32.39	■■■□□ 2.78
TPM1-208	ENST00000404484	TIAM1	Q13009	1591 aa		32.38	■■■□□ 2.77
TPM1-208	ENST00000404484	GLI2	P10070	1586 aa		32.37	■■■□□ 2.77
TPM1-208	ENST00000404484	HNRNPUL2-BSCL2	H3BQZ7	746 aa	Predicted RBP	32.37	■■■□□ 2.77
TPM1-208	ENST00000404484	HNRNPUL2	Q1KMD3	747 aa	Known RBP	32.37	■■■□□ 2.77
TPM1-208	ENST00000404484	CFAP43	Q8NDM7	1665 aa		32.34	■■■□□ 2.77
TPM1-208	ENST00000404484	TSPOAP1	O95153	1857 aa		32.3	■■■□□ 2.76
TPM1-208	ENST00000404484	ATP1B4	Q9UN42	357 aa	Predicted RBP	32.29	■■■□□ 2.76
TPM1-208	ENST00000404484	HECW1	Q76N89	1606 aa		32.29	■■■□□ 2.76
TPM1-208	ENST00000404484	CCDC18	Q5T9S5	1454 aa		32.24	■■■□□ 2.75
TPM1-208	ENST00000404484	KANK4	Q5T7N3	995 aa	Predicted RBP	32.23	■■■□□ 2.75
TPM1-208	ENST00000404484	PLEKHD1	A6NEE1	506 aa		32.22	■■■□□ 2.75
TPM1-208	ENST00000404484	LRRC9	Q6ZRR7	1453 aa		32.22	■■■□□ 2.75
TPM1-208	ENST00000404484	MAP3K4	Q9Y6R4	1608 aa		32.2	■■■□□ 2.75
TPM1-208	ENST00000404484	PPRC1	Q5VV67	1664 aa	Known RBP	32.17	■■■□□ 2.74
TPM1-208	ENST00000404484	CDK13	Q14004	1512 aa	Known RBP	32.17	■■■□□ 2.74
TPM1-208	ENST00000404484	CD109	Q6YHK3	1445 aa		32.17	■■■□□ 2.74
TPM1-208	ENST00000404484	LRRIQ1	Q96JM4	1722 aa		32.13	■■■□□ 2.73
TPM1-208	ENST00000404484	TEX14	Q8IWB6	1497 aa		32.08	■■■□□ 2.73
TPM1-208	ENST00000404484	MAGI3	Q5TCQ9	1506 aa		32.06	■■■□□ 2.72
TPM1-208	ENST00000404484	MTUS2	Q5JR59	1369 aa		32.05	■■■□□ 2.72
TPM1-208	ENST00000404484	CDK11A	Q9UQ88	783 aa	Predicted RBP	32.05	■■■□□ 2.72
TPM1-208	ENST00000404484	EHBP1L1	Q8N3D4	1523 aa		32.03	■■■□□ 2.72
TPM1-208	ENST00000404484	KDM6B	O15054	1643 aa		32.03	■■■□□ 2.72
TPM1-208	ENST00000404484	ABCA9	Q8IUA7	1624 aa		32.03	■■■□□ 2.72
TPM1-208	ENST00000404484	COL17A1	Q9UMD9	1497 aa	Predicted RBP	32.01	■■■□□ 2.71
TPM1-208	ENST00000404484	RRBP1	Q9P2E9	1410 aa	Known RBP	31.96	■■■□□ 2.71
TPM1-208	ENST00000404484	GEMIN5	Q8TEQ6	1508 aa	Known RBP eCLIP	31.93	■■■□□ 2.7
TPM1-208	ENST00000404484	SUPT6H	Q7KZ85	1726 aa	Known RBP	31.92	■■■□□ 2.7
TPM1-208	ENST00000404484	TRO	Q12816	1431 aa	Predicted RBP	31.91	■■■□□ 2.7
TPM1-208	ENST00000404484	PHLDB1	Q86UU1	1377 aa		31.86	■■■□□ 2.69
TPM1-208	ENST00000404484	CCNB3	Q8WWL7	1395 aa		31.86	■■■□□ 2.69
TPM1-208	ENST00000404484	TTC37	Q6PGP7	1564 aa		31.86	■■■□□ 2.69
TPM1-208	ENST00000404484	NCOA2	Q15596	1464 aa		31.84	■■■□□ 2.69
TPM1-208	ENST00000404484	NEO1	Q92859	1461 aa		31.8	■■■□□ 2.68
TPM1-208	ENST00000404484	KIF14	Q15058	1648 aa		31.8	■■■□□ 2.68
TPM1-208	ENST00000404484	ARAP3	Q8WWN8	1544 aa		31.8	■■■□□ 2.68

Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms