RNA–Protein interactions for RNA: ENST00000404210.5

LINC00339-201, long intergenic non-protein coding RNA 339, humanhuman

BASIC

Gene LINC00339, Length 1,189 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-201ENST00000404210 UBTFP17480 764 aaKnown RBP20.05■□□□□ 0.8
LINC00339-201ENST00000404210 EHMT2Q96KQ7 1210 aa20.04■□□□□ 0.8
LINC00339-201ENST00000404210 LOC105371045A0A1W2PR82 267 aa20.03■□□□□ 0.8
LINC00339-201ENST00000404210 CEP170Q5SW79 1584 aa20.02■□□□□ 0.8
LINC00339-201ENST00000404210 KIAA0586Q9BVV6 1533 aa20■□□□□ 0.79
LINC00339-201ENST00000404210 TNIKQ9UKE5 1360 aa19.96■□□□□ 0.79
LINC00339-201ENST00000404210 CTTNBP2Q8WZ74 1663 aa19.96■□□□□ 0.79
LINC00339-201ENST00000404210 CLASP1Q7Z460 1538 aa19.94■□□□□ 0.78
LINC00339-201ENST00000404210 JPH4Q96JJ6 628 aa19.93■□□□□ 0.78
LINC00339-201ENST00000404210 IQGAP2Q13576 1575 aa19.91■□□□□ 0.78
LINC00339-201ENST00000404210 SHROOM2Q13796 1616 aa19.84■□□□□ 0.77
LINC00339-201ENST00000404210 UGGT2Q9NYU1 1516 aa19.84■□□□□ 0.77
LINC00339-201ENST00000404210 PRG4Q92954 1404 aaPredicted RBP19.8■□□□□ 0.76
LINC00339-201ENST00000404210 RANGAP1P46060 587 aaPredicted RBP19.8■□□□□ 0.76
LINC00339-201ENST00000404210 CARMIL2Q6F5E8 1435 aa19.78■□□□□ 0.76
LINC00339-201ENST00000404210 DISP1Q96F81 1524 aa19.76■□□□□ 0.75
LINC00339-201ENST00000404210 CLIP1P30622 1438 aa19.74■□□□□ 0.75
LINC00339-201ENST00000404210 CEP162Q5TB80 1403 aa19.74■□□□□ 0.75
LINC00339-201ENST00000404210 SAMD9Q5K651 1589 aa19.74■□□□□ 0.75
LINC00339-201ENST00000404210 EFCAB5A4FU69 1503 aa19.73■□□□□ 0.75
LINC00339-201ENST00000404210 P3H3Q8IVL6 736 aa19.72■□□□□ 0.75
LINC00339-201ENST00000404210 ARHGAP35Q9NRY4 1499 aa19.72■□□□□ 0.75
LINC00339-201ENST00000404210 DNAJC5Q9H3Z4 198 aa19.71■□□□□ 0.75
LINC00339-201ENST00000404210 KIAA0556O60303 1618 aa19.71■□□□□ 0.75
LINC00339-201ENST00000404210 ERCC6L2Q5T890 1561 aa19.7■□□□□ 0.74
LINC00339-201ENST00000404210 ARHGEF11O15085 1522 aa19.68■□□□□ 0.74
LINC00339-201ENST00000404210 PTPRGP23470 1445 aa19.64■□□□□ 0.73
LINC00339-201ENST00000404210 RIMBP3CA6NJZ7 1639 aa19.63■□□□□ 0.73
LINC00339-201ENST00000404210 RIMBP3BA6NNM3 1639 aa19.63■□□□□ 0.73
LINC00339-201ENST00000404210 RIMBP3Q9UFD9 1639 aa19.63■□□□□ 0.73
LINC00339-201ENST00000404210 FHOD3Q2V2M9 1422 aa19.63■□□□□ 0.73
LINC00339-201ENST00000404210 ARAP1Q96P48 1450 aa19.6■□□□□ 0.73
LINC00339-201ENST00000404210 TTBK1Q5TCY1 1321 aaPredicted RBP19.58■□□□□ 0.73
LINC00339-201ENST00000404210 FMN1Q68DA7 1419 aa19.58■□□□□ 0.72
LINC00339-201ENST00000404210 CYB5RLQ6IPT4 315 aa19.54■□□□□ 0.72
LINC00339-201ENST00000404210 UACAQ9BZF9 1416 aa19.51■□□□□ 0.71
LINC00339-201ENST00000404210 VPS8Q8N3P4 1428 aa19.5■□□□□ 0.71
LINC00339-201ENST00000404210 ABCA8O94911 1581 aa19.49■□□□□ 0.71
LINC00339-201ENST00000404210 PLB1Q6P1J6 1458 aa19.48■□□□□ 0.71
LINC00339-201ENST00000404210 UHRF1BP1LA0JNW5 1464 aa19.48■□□□□ 0.71
LINC00339-201ENST00000404210 CASKIN1Q8WXD9 1431 aa19.47■□□□□ 0.71
LINC00339-201ENST00000404210 RAPGEF6Q8TEU7 1601 aa19.47■□□□□ 0.71
LINC00339-201ENST00000404210 ATP1B4Q9UN42 357 aaPredicted RBP19.44■□□□□ 0.7
LINC00339-201ENST00000404210 ABCC2Q92887 1545 aa19.44■□□□□ 0.7
LINC00339-201ENST00000404210 FYCO1Q9BQS8 1478 aa19.41■□□□□ 0.7
LINC00339-201ENST00000404210 PCF11O94913 1555 aaKnown RBP19.4■□□□□ 0.7
LINC00339-201ENST00000404210 ADCY10Q96PN6 1610 aa19.4■□□□□ 0.7
LINC00339-201ENST00000404210 NPM1P06748 294 aaKnown RBP eCLIP19.39■□□□□ 0.69
LINC00339-201ENST00000404210 NUP153P49790 1475 aaKnown RBP19.39■□□□□ 0.69
LINC00339-201ENST00000404210 HECW1Q76N89 1606 aa19.39■□□□□ 0.69
LINC00339-201ENST00000404210 KDM5BQ9UGL1 1544 aa19.36■□□□□ 0.69
LINC00339-201ENST00000404210 ATP10BO94823 1461 aa19.36■□□□□ 0.69
LINC00339-201ENST00000404210 EPRSP07814 1512 aaKnown RBP19.35■□□□□ 0.69
LINC00339-201ENST00000404210 APLP2Q06481 763 aa19.34■□□□□ 0.69
LINC00339-201ENST00000404210 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.33■□□□□ 0.68
LINC00339-201ENST00000404210 HNRNPUL2Q1KMD3 747 aaKnown RBP19.33■□□□□ 0.68
LINC00339-201ENST00000404210 CCDC18Q5T9S5 1454 aa19.33■□□□□ 0.68
LINC00339-201ENST00000404210 ARID3CA6NKF2 412 aa19.32■□□□□ 0.68
LINC00339-201ENST00000404210 LRRIQ1Q96JM4 1722 aa19.31■□□□□ 0.68
LINC00339-201ENST00000404210 CDK11AQ9UQ88 783 aaPredicted RBP19.31■□□□□ 0.68
LINC00339-201ENST00000404210 MAP3K1Q13233 1512 aa19.3■□□□□ 0.68
LINC00339-201ENST00000404210 ZCCHC11Q5TAX3 1644 aaKnown RBP19.29■□□□□ 0.68
LINC00339-201ENST00000404210 PLEKHD1A6NEE1 506 aa19.29■□□□□ 0.68
LINC00339-201ENST00000404210 CDK13Q14004 1512 aaKnown RBP19.27■□□□□ 0.68
LINC00339-201ENST00000404210 TIAM1Q13009 1591 aa19.24■□□□□ 0.67
LINC00339-201ENST00000404210 MAPKBP1O60336 1514 aa19.21■□□□□ 0.67
LINC00339-201ENST00000404210 CFAP43Q8NDM7 1665 aa19.21■□□□□ 0.67
LINC00339-201ENST00000404210 ASXL2Q76L83 1435 aa19.21■□□□□ 0.67
LINC00339-201ENST00000404210 KANK4Q5T7N3 995 aaPredicted RBP19.2■□□□□ 0.66
LINC00339-201ENST00000404210 MTUS2Q5JR59 1369 aa19.19■□□□□ 0.66
LINC00339-201ENST00000404210 TROQ12816 1431 aaPredicted RBP19.18■□□□□ 0.66
LINC00339-201ENST00000404210 LRRC9Q6ZRR7 1453 aa19.18■□□□□ 0.66
LINC00339-201ENST00000404210 WDR7Q9Y4E6 1490 aa19.17■□□□□ 0.66
LINC00339-201ENST00000404210 MAGI3Q5TCQ9 1506 aa19.16■□□□□ 0.66
LINC00339-201ENST00000404210 KCNH8Q96L42 1107 aa19.16■□□□□ 0.66
LINC00339-201ENST00000404210 EHBP1L1Q8N3D4 1523 aa19.13■□□□□ 0.65
LINC00339-201ENST00000404210 ABCC10Q5T3U5 1492 aa19.09■□□□□ 0.65
LINC00339-201ENST00000404210 PPARGC1BQ86YN6 1023 aaKnown RBP19.08■□□□□ 0.64
LINC00339-201ENST00000404210 SUPT6HQ7KZ85 1726 aaKnown RBP19.07■□□□□ 0.64
LINC00339-201ENST00000404210 FAM69CQ0P6D2 419 aa19.06■□□□□ 0.64
LINC00339-201ENST00000404210 KIF14Q15058 1648 aa19.06■□□□□ 0.64
LINC00339-201ENST00000404210 GLI2P10070 1586 aa19.06■□□□□ 0.64
LINC00339-201ENST00000404210 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP19.04■□□□□ 0.64
LINC00339-201ENST00000404210 NCOA2Q15596 1464 aa19.03■□□□□ 0.64
LINC00339-201ENST00000404210 DIP2BQ9P265 1576 aa19.03■□□□□ 0.64
LINC00339-201ENST00000404210 ABCA9Q8IUA7 1624 aa19.03■□□□□ 0.64
LINC00339-201ENST00000404210 FOXD1Q16676 465 aa19.02■□□□□ 0.64
LINC00339-201ENST00000404210 CCNB3Q8WWL7 1395 aa19■□□□□ 0.63
LINC00339-201ENST00000404210 KIF13AQ9H1H9 1805 aa19■□□□□ 0.63
LINC00339-201ENST00000404210 CD109Q6YHK3 1445 aa18.99■□□□□ 0.63
LINC00339-201ENST00000404210 TRHP20396 242 aaPredicted RBP18.98■□□□□ 0.63
LINC00339-201ENST00000404210 GPATCH8Q9UKJ3 1502 aaKnown RBP18.97■□□□□ 0.63
LINC00339-201ENST00000404210 PLCH2O75038 1416 aa18.97■□□□□ 0.63
LINC00339-201ENST00000404210 TTC37Q6PGP7 1564 aa18.97■□□□□ 0.63
LINC00339-201ENST00000404210 MAP3K4Q9Y6R4 1608 aa18.96■□□□□ 0.63
LINC00339-201ENST00000404210 PHLDB1Q86UU1 1377 aa18.95■□□□□ 0.62
LINC00339-201ENST00000404210 CDC42BPAQ5VT25 1732 aa18.94■□□□□ 0.62
LINC00339-201ENST00000404210 MYO5CQ9NQX4 1742 aa18.94■□□□□ 0.62
LINC00339-201ENST00000404210 MYOM3Q5VTT5 1437 aa18.93■□□□□ 0.62
LINC00339-201ENST00000404210 EFCAB2Q5VUJ9 269 aa18.93■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms