RNA–Protein interactions for RNA: ENST00000399655.5

CACNA1C-220, Transcript of calcium voltage-gated channel subunit alpha1 C, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CACNA1C, Length 13,433 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1C-220ENST00000399655 NEUROD1Q13562 356 aa11.13□□□□□ -0.63
CACNA1C-220ENST00000399655 KRI1Q8N9T8 703 aaKnown RBP11.11□□□□□ -0.63
CACNA1C-220ENST00000399655 HSP90B1P14625 803 aaKnown RBP11.1□□□□□ -0.63
CACNA1C-220ENST00000399655 TRIM52Q96A61 297 aa11.09□□□□□ -0.63
CACNA1C-220ENST00000399655 MEX3CQ5U5Q3 659 aaKnown RBP11.09□□□□□ -0.63
CACNA1C-220ENST00000399655 DRC7Q8IY82 874 aa11.08□□□□□ -0.64
CACNA1C-220ENST00000399655 CCDC34Q96HJ3 373 aa11.08□□□□□ -0.64
CACNA1C-220ENST00000399655 GOLGA6L3A6NEY3 463 aa11.07□□□□□ -0.64
CACNA1C-220ENST00000399655 NOM1Q5C9Z4 860 aaKnown RBP11.07□□□□□ -0.64
CACNA1C-220ENST00000399655 HTATSF1O43719 755 aaKnown RBP11.06□□□□□ -0.64
CACNA1C-220ENST00000399655 GPS2Q13227 327 aa11.05□□□□□ -0.64
CACNA1C-220ENST00000399655 PLCB2Q00722 1185 aa11.04□□□□□ -0.64
CACNA1C-220ENST00000399655 CEP89Q96ST8 783 aa11.04□□□□□ -0.64
CACNA1C-220ENST00000399655 TPM4P67936 248 aa11.03□□□□□ -0.64
CACNA1C-220ENST00000399655 CFAP44Q96MT7 982 aa11.02□□□□□ -0.65
CACNA1C-220ENST00000399655 ACIN1Q9UKV3 1341 aaKnown RBP11.02□□□□□ -0.65
CACNA1C-220ENST00000399655 CHMP4BQ9H444 224 aaKnown RBP11.01□□□□□ -0.65
CACNA1C-220ENST00000399655 CCDC70Q6NSX1 233 aa11.01□□□□□ -0.65
CACNA1C-220ENST00000399655 FGD1P98174 961 aa11□□□□□ -0.65
CACNA1C-220ENST00000399655 CCDC191Q8NCU4 936 aa11□□□□□ -0.65
CACNA1C-220ENST00000399655 NISCHQ9Y2I1 1504 aa10.99□□□□□ -0.65
CACNA1C-220ENST00000399655 NEXNQ0ZGT2 675 aa10.99□□□□□ -0.65
CACNA1C-220ENST00000399655 FKBP8Q14318 412 aa10.98□□□□□ -0.65
CACNA1C-220ENST00000399655 FAM50AQ14320 339 aaKnown RBP10.98□□□□□ -0.65
CACNA1C-220ENST00000399655 ABCF1Q8NE71 845 aaKnown RBP eCLIP10.98□□□□□ -0.65
CACNA1C-220ENST00000399655 SYAP1Q96A49 352 aaPredicted RBP10.97□□□□□ -0.65
CACNA1C-220ENST00000399655 ESF1Q9H501 851 aaKnown RBP10.96□□□□□ -0.65
CACNA1C-220ENST00000399655 TEX35Q5T0J7 233 aa10.96□□□□□ -0.66
CACNA1C-220ENST00000399655 SEPT11Q9NVA2 429 aaKnown RBP10.96□□□□□ -0.66
CACNA1C-220ENST00000399655 WDR43Q15061 677 aaKnown RBP eCLIP10.96□□□□□ -0.66
CACNA1C-220ENST00000399655 CDR1P51861 262 aa10.95□□□□□ -0.66
CACNA1C-220ENST00000399655 TPM3P06753 285 aa10.94□□□□□ -0.66
CACNA1C-220ENST00000399655 PPARGC1BQ86YN6 1023 aaKnown RBP10.93□□□□□ -0.66
CACNA1C-220ENST00000399655 DCTN1Q14203 1278 aa10.93□□□□□ -0.66
CACNA1C-220ENST00000399655 GNL2Q13823 731 aaKnown RBP10.93□□□□□ -0.66
CACNA1C-220ENST00000399655 MCCP23508 829 aa10.93□□□□□ -0.66
CACNA1C-220ENST00000399655 HSP90AB1P08238 724 aaKnown RBP10.92□□□□□ -0.66
CACNA1C-220ENST00000399655 CALD1Q05682 793 aaKnown RBP10.92□□□□□ -0.66
CACNA1C-220ENST00000399655 GOLGA2Q08379 1002 aa10.92□□□□□ -0.66
CACNA1C-220ENST00000399655 MAP7D2Q96T17 732 aa10.91□□□□□ -0.66
CACNA1C-220ENST00000399655 ZRSR2Q15696 482 aaKnown RBP10.91□□□□□ -0.66
CACNA1C-220ENST00000399655 RDXP35241 583 aaKnown RBP10.9□□□□□ -0.66
CACNA1C-220ENST00000399655 HSP90AA2PQ14568 343 aaPredicted RBP10.9□□□□□ -0.66
CACNA1C-220ENST00000399655 INCENPQ9NQS7 918 aa10.9□□□□□ -0.67
CACNA1C-220ENST00000399655 PATL2C9JE40 543 aaKnown RBP10.89□□□□□ -0.67
CACNA1C-220ENST00000399655 HNRNPUQ00839 825 aaKnown RBP eCLIP10.88□□□□□ -0.67
CACNA1C-220ENST00000399655 PHF14O94880 888 aa10.88□□□□□ -0.67
CACNA1C-220ENST00000399655 KCNJ4P48050 445 aa10.88□□□□□ -0.67
CACNA1C-220ENST00000399655 HSCBQ8IWL3 235 aa10.88□□□□□ -0.67
CACNA1C-220ENST00000399655 CAGE1Q8TC20 777 aa10.88□□□□□ -0.67
CACNA1C-220ENST00000399655 CWC15Q9P013 229 aaKnown RBP10.87□□□□□ -0.67
CACNA1C-220ENST00000399655 DYDC1Q8WWB3 177 aa10.87□□□□□ -0.67
CACNA1C-220ENST00000399655 CSPP1Q1MSJ5 1256 aa10.86□□□□□ -0.67
CACNA1C-220ENST00000399655 TMC1Q8TDI8 760 aa10.86□□□□□ -0.67
CACNA1C-220ENST00000399655 RSPH6AQ9H0K4 717 aa10.86□□□□□ -0.67
CACNA1C-220ENST00000399655 EIF4G2P78344 907 aaKnown RBP eCLIP10.86□□□□□ -0.67
CACNA1C-220ENST00000399655 GBP4Q96PP9 640 aa10.85□□□□□ -0.67
CACNA1C-220ENST00000399655 TAF7LQ5H9L4 462 aa10.85□□□□□ -0.67
CACNA1C-220ENST00000399655 AK7Q96M32 723 aa10.85□□□□□ -0.67
CACNA1C-220ENST00000399655 TSR1Q2NL82 804 aaKnown RBP10.84□□□□□ -0.67
CACNA1C-220ENST00000399655 FTSJ3Q8IY81 847 aaKnown RBP10.84□□□□□ -0.67
CACNA1C-220ENST00000399655 RTN4Q9NQC3 1192 aaKnown RBP10.84□□□□□ -0.67
CACNA1C-220ENST00000399655 NPHP1O15259 732 aa10.84□□□□□ -0.67
CACNA1C-220ENST00000399655 ACBD3Q9H3P7 528 aa10.84□□□□□ -0.67
CACNA1C-220ENST00000399655 MS4A1P11836 297 aa10.83□□□□□ -0.68
CACNA1C-220ENST00000399655 STAG3Q9UJ98 1225 aa10.83□□□□□ -0.68
CACNA1C-220ENST00000399655 TPRNQ4KMQ1 711 aa10.82□□□□□ -0.68
CACNA1C-220ENST00000399655 ZNF771Q7L3S4 317 aaPredicted RBP10.82□□□□□ -0.68
CACNA1C-220ENST00000399655 NOP58Q9Y2X3 529 aaKnown RBP10.82□□□□□ -0.68
CACNA1C-220ENST00000399655 HMGB1P09429 215 aaKnown RBP10.81□□□□□ -0.68
CACNA1C-220ENST00000399655 TPM1P09493 284 aa10.81□□□□□ -0.68
CACNA1C-220ENST00000399655 A0A0G2JS52 829 aa10.81□□□□□ -0.68
CACNA1C-220ENST00000399655 NAP1L2Q9ULW6 460 aaPredicted RBP10.81□□□□□ -0.68
CACNA1C-220ENST00000399655 RUFY1Q96T51 708 aa10.79□□□□□ -0.68
CACNA1C-220ENST00000399655 TPM2P07951 284 aa10.79□□□□□ -0.68
CACNA1C-220ENST00000399655 MYO6Q9UM54 1294 aa10.78□□□□□ -0.68
CACNA1C-220ENST00000399655 HMGN5P82970 282 aaKnown RBP10.78□□□□□ -0.68
CACNA1C-220ENST00000399655 TONSLQ96HA7 1378 aa10.78□□□□□ -0.68
CACNA1C-220ENST00000399655 BCCIPQ9P287 314 aaKnown RBP eCLIP10.78□□□□□ -0.68
CACNA1C-220ENST00000399655 GOLGA6L7A0A1B0GV03 622 aa10.77□□□□□ -0.68
CACNA1C-220ENST00000399655 CCDC66A2RUB6 948 aa10.76□□□□□ -0.69
CACNA1C-220ENST00000399655 ARGLU1Q9NWB6 273 aaPredicted RBP10.76□□□□□ -0.69
CACNA1C-220ENST00000399655 H0YHG0 523 aa10.75□□□□□ -0.69
CACNA1C-220ENST00000399655 MTERF4Q7Z6M4 381 aaKnown RBP10.75□□□□□ -0.69
CACNA1C-220ENST00000399655 OS9Q13438 667 aaPredicted RBP10.75□□□□□ -0.69
CACNA1C-220ENST00000399655 IPO7O95373 1038 aaKnown RBP10.75□□□□□ -0.69
CACNA1C-220ENST00000399655 MNS1Q8NEH6 495 aa10.74□□□□□ -0.69
CACNA1C-220ENST00000399655 HAP1P54257 671 aaPredicted RBP10.74□□□□□ -0.69
CACNA1C-220ENST00000399655 SCAF1Q9H7N4 1312 aaKnown RBP10.74□□□□□ -0.69
CACNA1C-220ENST00000399655 FAM9BQ8IZU0 186 aa10.73□□□□□ -0.69
CACNA1C-220ENST00000399655 USP8P40818 1118 aa10.73□□□□□ -0.69
CACNA1C-220ENST00000399655 PPP4R2Q9NY27 417 aa10.73□□□□□ -0.69
CACNA1C-220ENST00000399655 FBXO3Q9UK99 471 aa10.73□□□□□ -0.69
CACNA1C-220ENST00000399655 FEZ1Q99689 392 aa10.73□□□□□ -0.69
CACNA1C-220ENST00000399655 HSP90B2PQ58FF3 399 aa10.72□□□□□ -0.69
CACNA1C-220ENST00000399655 ARID3AQ99856 593 aa10.72□□□□□ -0.69
CACNA1C-220ENST00000399655 PDE4CQ08493 712 aa10.72□□□□□ -0.69
CACNA1C-220ENST00000399655 ISY1Q9ULR0 285 aaKnown RBP10.72□□□□□ -0.69
CACNA1C-220ENST00000399655 KIAA1211Q6ZU35 1233 aa10.72□□□□□ -0.69
CACNA1C-220ENST00000399655 CNKSR2Q8WXI2 1034 aa10.71□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms