RNA–Protein interactions for RNA: ENST00000399127.5

COL25A1-202, Transcript of collagen type XXV alpha 1 chain, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene COL25A1, Length 2,500 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL25A1-202ENST00000399127 KANK4Q5T7N3 995 aaPredicted RBP17.84■□□□□ 0.45
COL25A1-202ENST00000399127 THOC2Q8NI27 1593 aaKnown RBP17.83■□□□□ 0.45
COL25A1-202ENST00000399127 ABCA5Q8WWZ7 1642 aa17.83■□□□□ 0.44
COL25A1-202ENST00000399127 IFT140Q96RY7 1462 aa17.82■□□□□ 0.44
COL25A1-202ENST00000399127 ZNF608Q9ULD9 1512 aaPredicted RBP17.8■□□□□ 0.44
COL25A1-202ENST00000399127 P3H3Q8IVL6 736 aa17.78■□□□□ 0.44
COL25A1-202ENST00000399127 CUL7Q14999 1698 aa17.77■□□□□ 0.44
COL25A1-202ENST00000399127 PBRM1Q86U86 1689 aa17.72■□□□□ 0.43
COL25A1-202ENST00000399127 GRIN2BQ13224 1484 aa17.71■□□□□ 0.43
COL25A1-202ENST00000399127 ATP1B4Q9UN42 357 aaPredicted RBP17.68■□□□□ 0.42
COL25A1-202ENST00000399127 FHAD1B1AJZ9 1412 aa17.67■□□□□ 0.42
COL25A1-202ENST00000399127 FHOD3Q2V2M9 1422 aa17.67■□□□□ 0.42
COL25A1-202ENST00000399127 EIF4G3O43432 1585 aaKnown RBP17.66■□□□□ 0.42
COL25A1-202ENST00000399127 SCAF1Q9H7N4 1312 aaKnown RBP17.65■□□□□ 0.42
COL25A1-202ENST00000399127 CTTNBP2Q8WZ74 1663 aa17.63■□□□□ 0.41
COL25A1-202ENST00000399127 SNAPC4Q5SXM2 1469 aa17.63■□□□□ 0.41
COL25A1-202ENST00000399127 FBLN2P98095 1184 aa17.63■□□□□ 0.41
COL25A1-202ENST00000399127 ADAMTS12P58397 1594 aa17.62■□□□□ 0.41
COL25A1-202ENST00000399127 TIAM1Q13009 1591 aa17.62■□□□□ 0.41
COL25A1-202ENST00000399127 PCF11O94913 1555 aaKnown RBP17.61■□□□□ 0.41
COL25A1-202ENST00000399127 ITGAEP38570 1179 aa17.59■□□□□ 0.41
COL25A1-202ENST00000399127 CHMP7Q8WUX9 453 aaPredicted RBP17.59■□□□□ 0.41
COL25A1-202ENST00000399127 RRBP1Q9P2E9 1410 aaKnown RBP17.58■□□□□ 0.4
COL25A1-202ENST00000399127 EFCAB5A4FU69 1503 aa17.57■□□□□ 0.4
COL25A1-202ENST00000399127 CCNB3Q8WWL7 1395 aa17.56■□□□□ 0.4
COL25A1-202ENST00000399127 LRRC9Q6ZRR7 1453 aa17.55■□□□□ 0.4
COL25A1-202ENST00000399127 MAP3K1Q13233 1512 aa17.53■□□□□ 0.4
COL25A1-202ENST00000399127 MAGI1Q96QZ7 1491 aaPredicted RBP17.52■□□□□ 0.4
COL25A1-202ENST00000399127 GRIN2AQ12879 1464 aa17.5■□□□□ 0.39
COL25A1-202ENST00000399127 PHLDB1Q86UU1 1377 aa17.5■□□□□ 0.39
COL25A1-202ENST00000399127 CFAP43Q8NDM7 1665 aa17.5■□□□□ 0.39
COL25A1-202ENST00000399127 FYCO1Q9BQS8 1478 aa17.49■□□□□ 0.39
COL25A1-202ENST00000399127 CASKIN1Q8WXD9 1431 aa17.49■□□□□ 0.39
COL25A1-202ENST00000399127 SYNJ2O15056 1496 aa17.48■□□□□ 0.39
COL25A1-202ENST00000399127 FMN1Q68DA7 1419 aa17.48■□□□□ 0.39
COL25A1-202ENST00000399127 IQGAP2Q13576 1575 aa17.46■□□□□ 0.39
COL25A1-202ENST00000399127 SAMD9Q5K651 1589 aa17.46■□□□□ 0.39
COL25A1-202ENST00000399127 FAM50AQ14320 339 aaKnown RBP17.45■□□□□ 0.38
COL25A1-202ENST00000399127 DHX57Q6P158 1386 aaKnown RBP17.43■□□□□ 0.38
COL25A1-202ENST00000399127 KIAA0586Q9BVV6 1533 aa17.41■□□□□ 0.38
COL25A1-202ENST00000399127 CEP170Q5SW79 1584 aa17.39■□□□□ 0.37
COL25A1-202ENST00000399127 LRRIQ1Q96JM4 1722 aa17.38■□□□□ 0.37
COL25A1-202ENST00000399127 MTUS2Q5JR59 1369 aa17.37■□□□□ 0.37
COL25A1-202ENST00000399127 DIEXFQ68CQ4 756 aaKnown RBP17.37■□□□□ 0.37
COL25A1-202ENST00000399127 RAB3GAP2Q9H2M9 1393 aa17.34■□□□□ 0.37
COL25A1-202ENST00000399127 ZNF316A6NFI3 1004 aaPredicted RBP17.34■□□□□ 0.37
COL25A1-202ENST00000399127 ARID3CA6NKF2 412 aa17.34■□□□□ 0.37
COL25A1-202ENST00000399127 UGGT2Q9NYU1 1516 aa17.34■□□□□ 0.37
COL25A1-202ENST00000399127 NUP160Q12769 1436 aa17.34■□□□□ 0.37
COL25A1-202ENST00000399127 JPH4Q96JJ6 628 aa17.34■□□□□ 0.37
COL25A1-202ENST00000399127 CLSPNQ9HAW4 1339 aa17.29■□□□□ 0.36
COL25A1-202ENST00000399127 DISP1Q96F81 1524 aa17.29■□□□□ 0.36
COL25A1-202ENST00000399127 SETD5Q9C0A6 1442 aa17.28■□□□□ 0.36
COL25A1-202ENST00000399127 CHD1O14646 1710 aa17.28■□□□□ 0.36
COL25A1-202ENST00000399127 FGD6Q6ZV73 1430 aa17.28■□□□□ 0.36
COL25A1-202ENST00000399127 KIAA0556O60303 1618 aa17.27■□□□□ 0.36
COL25A1-202ENST00000399127 NCOA2Q15596 1464 aa17.27■□□□□ 0.35
COL25A1-202ENST00000399127 MAGI3Q5TCQ9 1506 aa17.25■□□□□ 0.35
COL25A1-202ENST00000399127 CARMIL2Q6F5E8 1435 aa17.24■□□□□ 0.35
COL25A1-202ENST00000399127 CDK13Q14004 1512 aaKnown RBP17.23■□□□□ 0.35
COL25A1-202ENST00000399127 HECW1Q76N89 1606 aa17.23■□□□□ 0.35
COL25A1-202ENST00000399127 EHBP1L1Q8N3D4 1523 aa17.22■□□□□ 0.35
COL25A1-202ENST00000399127 SUPT6HQ7KZ85 1726 aaKnown RBP17.22■□□□□ 0.35
COL25A1-202ENST00000399127 EPRSP07814 1512 aaKnown RBP17.22■□□□□ 0.35
COL25A1-202ENST00000399127 CCDC18Q5T9S5 1454 aa17.21■□□□□ 0.35
COL25A1-202ENST00000399127 MYOM3Q5VTT5 1437 aa17.2■□□□□ 0.34
COL25A1-202ENST00000399127 PRG4Q92954 1404 aaPredicted RBP17.19■□□□□ 0.34
COL25A1-202ENST00000399127 MAPKBP1O60336 1514 aa17.19■□□□□ 0.34
COL25A1-202ENST00000399127 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP17.19■□□□□ 0.34
COL25A1-202ENST00000399127 PTPRKQ15262 1439 aa17.17■□□□□ 0.34
COL25A1-202ENST00000399127 PLB1Q6P1J6 1458 aa17.15■□□□□ 0.34
COL25A1-202ENST00000399127 NEUROD1Q13562 356 aa17.13■□□□□ 0.33
COL25A1-202ENST00000399127 SIN3AQ96ST3 1273 aa17.13■□□□□ 0.33
COL25A1-202ENST00000399127 ARHGEF11O15085 1522 aa17.13■□□□□ 0.33
COL25A1-202ENST00000399127 RAPGEF6Q8TEU7 1601 aa17.12■□□□□ 0.33
COL25A1-202ENST00000399127 PTPN23Q9H3S7 1636 aa17.12■□□□□ 0.33
COL25A1-202ENST00000399127 CHIC2Q9UKJ5 165 aa17.11■□□□□ 0.33
COL25A1-202ENST00000399127 NUP153P49790 1475 aaKnown RBP17.11■□□□□ 0.33
COL25A1-202ENST00000399127 PTPRGP23470 1445 aa17.1■□□□□ 0.33
COL25A1-202ENST00000399127 HFM1A2PYH4 1435 aa17.07■□□□□ 0.32
COL25A1-202ENST00000399127 RRP7BPQ9NSQ0 103 aa17.07■□□□□ 0.32
COL25A1-202ENST00000399127 MIER1Q8N108 512 aa17.06■□□□□ 0.32
COL25A1-202ENST00000399127 CDK11AQ9UQ88 783 aaPredicted RBP17.06■□□□□ 0.32
COL25A1-202ENST00000399127 NAIPQ13075 1403 aa17.05■□□□□ 0.32
COL25A1-202ENST00000399127 ERCC6L2Q5T890 1561 aa17.05■□□□□ 0.32
COL25A1-202ENST00000399127 SHROOM2Q13796 1616 aa17.04■□□□□ 0.32
COL25A1-202ENST00000399127 CLASP1Q7Z460 1538 aa17.03■□□□□ 0.32
COL25A1-202ENST00000399127 TCOF1Q13428 1488 aaKnown RBP17.02■□□□□ 0.32
COL25A1-202ENST00000399127 ABCA8O94911 1581 aa17■□□□□ 0.31
COL25A1-202ENST00000399127 OSCARQ8IYS5 282 aa17■□□□□ 0.31
COL25A1-202ENST00000399127 ZNF644Q9H582 1327 aaPredicted RBP17■□□□□ 0.31
COL25A1-202ENST00000399127 MIA2Q96PC5 1412 aa16.99■□□□□ 0.31
COL25A1-202ENST00000399127 UACAQ9BZF9 1416 aa16.98■□□□□ 0.31
COL25A1-202ENST00000399127 PLEKHD1A6NEE1 506 aa16.98■□□□□ 0.31
COL25A1-202ENST00000399127 YTHDC1Q96MU7 727 aaKnown RBP16.98■□□□□ 0.31
COL25A1-202ENST00000399127 ACIN1Q9UKV3 1341 aaKnown RBP16.97■□□□□ 0.31
COL25A1-202ENST00000399127 ATP10BO94823 1461 aa16.97■□□□□ 0.31
COL25A1-202ENST00000399127 BCL11AQ9H165 835 aa16.96■□□□□ 0.3
COL25A1-202ENST00000399127 TROQ12816 1431 aaPredicted RBP16.95■□□□□ 0.3
COL25A1-202ENST00000399127 TRIM52Q96A61 297 aa16.94■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms