RNA–Protein interactions for RNA: ENST00000398510.7

CHD9-202, Transcript of chromodomain helicase DNA binding protein 9, humanhuman

TSL 1 (best) BASIC

Gene CHD9, Length 11,337 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9-202ENST00000398510 ANP32EQ9BTT0 268 aa3.66□□□□□ -1.82
CHD9-202ENST00000398510 WRNQ14191 1432 aaPredicted RBP eCLIP3.66□□□□□ -1.82
CHD9-202ENST00000398510 PLPPR3Q6T4P5 718 aa3.66□□□□□ -1.82
CHD9-202ENST00000398510 CUX1P39880 1505 aa3.66□□□□□ -1.82
CHD9-202ENST00000398510 HMGXB3Q12766 1538 aa3.66□□□□□ -1.82
CHD9-202ENST00000398510 CFAP44Q96MT7 982 aa3.66□□□□□ -1.82
CHD9-202ENST00000398510 SUPT6HQ7KZ85 1726 aaKnown RBP3.65□□□□□ -1.83
CHD9-202ENST00000398510 UACAQ9BZF9 1416 aa3.65□□□□□ -1.83
CHD9-202ENST00000398510 PCGF6Q9BYE7 350 aa3.65□□□□□ -1.83
CHD9-202ENST00000398510 WASHC2AQ641Q2 1341 aa3.64□□□□□ -1.83
CHD9-202ENST00000398510 CC2D2AQ9P2K1 1620 aa3.64□□□□□ -1.83
CHD9-202ENST00000398510 FMN1Q68DA7 1419 aa3.64□□□□□ -1.83
CHD9-202ENST00000398510 RANGAP1P46060 587 aaPredicted RBP3.64□□□□□ -1.83
CHD9-202ENST00000398510 MTUS2Q5JR59 1369 aa3.64□□□□□ -1.83
CHD9-202ENST00000398510 PNNQ9H307 717 aaKnown RBP3.64□□□□□ -1.83
CHD9-202ENST00000398510 GOLGA6L2Q8N9W4 650 aaPredicted RBP3.64□□□□□ -1.83
CHD9-202ENST00000398510 CASC1Q6TDU7 716 aa3.63□□□□□ -1.83
CHD9-202ENST00000398510 CHMP7Q8WUX9 453 aaPredicted RBP3.63□□□□□ -1.83
CHD9-202ENST00000398510 HECW1Q76N89 1606 aa3.63□□□□□ -1.83
CHD9-202ENST00000398510 LAMC3Q9Y6N6 1575 aa3.63□□□□□ -1.83
CHD9-202ENST00000398510 SCAPERQ9BY12 1400 aa3.63□□□□□ -1.83
CHD9-202ENST00000398510 TONSLQ96HA7 1378 aa3.63□□□□□ -1.83
CHD9-202ENST00000398510 FAM50AQ14320 339 aaKnown RBP3.63□□□□□ -1.83
CHD9-202ENST00000398510 WWC1Q8IX03 1113 aa3.62□□□□□ -1.83
CHD9-202ENST00000398510 PBRM1Q86U86 1689 aa3.62□□□□□ -1.83
CHD9-202ENST00000398510 ANP32CO43423 234 aa3.62□□□□□ -1.83
CHD9-202ENST00000398510 DNAJC5BQ9UF47 199 aa3.62□□□□□ -1.83
CHD9-202ENST00000398510 TRIM52Q96A61 297 aa3.62□□□□□ -1.83
CHD9-202ENST00000398510 TMX4Q9H1E5 349 aaPredicted RBP3.61□□□□□ -1.83
CHD9-202ENST00000398510 L1TD1Q5T7N2 865 aaKnown RBP3.61□□□□□ -1.83
CHD9-202ENST00000398510 SETD5Q9C0A6 1442 aa3.61□□□□□ -1.83
CHD9-202ENST00000398510 HSP90AA1P07900 732 aaKnown RBP3.61□□□□□ -1.83
CHD9-202ENST00000398510 KIF21BO75037 1637 aa3.61□□□□□ -1.83
CHD9-202ENST00000398510 PPP1R15AO75807 674 aaPredicted RBP3.61□□□□□ -1.83
CHD9-202ENST00000398510 TSPY4P0CV99 314 aa3.61□□□□□ -1.83
CHD9-202ENST00000398510 TSPY10P0CW01 314 aa3.61□□□□□ -1.83
CHD9-202ENST00000398510 HDAC5Q9UQL6 1122 aa3.6□□□□□ -1.83
CHD9-202ENST00000398510 GOLGA6L6A8MZA4 724 aa3.6□□□□□ -1.83
CHD9-202ENST00000398510 ARHGAP35Q9NRY4 1499 aa3.59□□□□□ -1.83
CHD9-202ENST00000398510 ZRSR1Q15695 479 aaKnown RBP3.59□□□□□ -1.83
CHD9-202ENST00000398510 KIF14Q15058 1648 aa3.59□□□□□ -1.83
CHD9-202ENST00000398510 EIF4G1Q04637 1599 aaKnown RBP3.59□□□□□ -1.83
CHD9-202ENST00000398510 DCAF8L1A6NGE4 600 aa3.59□□□□□ -1.83
CHD9-202ENST00000398510 EFCAB5A4FU69 1503 aa3.59□□□□□ -1.83
CHD9-202ENST00000398510 MS4A1P11836 297 aa3.59□□□□□ -1.84
CHD9-202ENST00000398510 NEUROD1Q13562 356 aa3.59□□□□□ -1.84
CHD9-202ENST00000398510 SYNJ1O43426 1573 aa3.59□□□□□ -1.84
CHD9-202ENST00000398510 CFAP53Q96M91 514 aa3.58□□□□□ -1.84
CHD9-202ENST00000398510 USP35Q9P2H5 1018 aa3.58□□□□□ -1.84
CHD9-202ENST00000398510 ANP32AP39687 249 aaKnown RBP3.58□□□□□ -1.84
CHD9-202ENST00000398510 POLR3GLQ9BT43 218 aa3.58□□□□□ -1.84
CHD9-202ENST00000398510 GLIPR1L2Q4G1C9 344 aa3.58□□□□□ -1.84
CHD9-202ENST00000398510 NRDCO43847 1150 aa3.58□□□□□ -1.84
CHD9-202ENST00000398510 NPHP1O15259 732 aa3.57□□□□□ -1.84
CHD9-202ENST00000398510 CCDC88BA6NC98 1476 aa3.57□□□□□ -1.84
CHD9-202ENST00000398510 NESP48681 1621 aa3.57□□□□□ -1.84
CHD9-202ENST00000398510 C14orf37Q86TY3 774 aa3.57□□□□□ -1.84
CHD9-202ENST00000398510 CALD1Q05682 793 aaKnown RBP3.56□□□□□ -1.84
CHD9-202ENST00000398510 PLEKHH2Q8IVE3 1493 aa3.56□□□□□ -1.84
CHD9-202ENST00000398510 CCDC34Q96HJ3 373 aa3.56□□□□□ -1.84
CHD9-202ENST00000398510 WIZO95785 1651 aa3.56□□□□□ -1.84
CHD9-202ENST00000398510 PLEKHD1A6NEE1 506 aa3.56□□□□□ -1.84
CHD9-202ENST00000398510 ADGBQ8N7X0 1667 aa3.56□□□□□ -1.84
CHD9-202ENST00000398510 ERICH3Q5RHP9 1530 aa3.56□□□□□ -1.84
CHD9-202ENST00000398510 THOC2Q8NI27 1593 aaKnown RBP3.56□□□□□ -1.84
CHD9-202ENST00000398510 CHMP4CQ96CF2 233 aa3.56□□□□□ -1.84
CHD9-202ENST00000398510 GCC2Q8IWJ2 1684 aa3.55□□□□□ -1.84
CHD9-202ENST00000398510 GOLGA6L22H0YM25 854 aa3.55□□□□□ -1.84
CHD9-202ENST00000398510 RSPH4AQ5TD94 716 aa3.55□□□□□ -1.84
CHD9-202ENST00000398510 CECR2Q9BXF3 1484 aa3.55□□□□□ -1.84
CHD9-202ENST00000398510 DNMBPQ6XZF7 1577 aa3.55□□□□□ -1.84
CHD9-202ENST00000398510 CHAF1AQ13111 956 aaPredicted RBP3.55□□□□□ -1.84
CHD9-202ENST00000398510 GOLGA2Q08379 1002 aa3.55□□□□□ -1.84
CHD9-202ENST00000398510 KIF1BO60333 1816 aa3.55□□□□□ -1.84
CHD9-202ENST00000398510 KRI1Q8N9T8 703 aaKnown RBP3.55□□□□□ -1.84
CHD9-202ENST00000398510 MYO5CQ9NQX4 1742 aa3.55□□□□□ -1.84
CHD9-202ENST00000398510 WDR43Q15061 677 aaKnown RBP eCLIP3.55□□□□□ -1.84
CHD9-202ENST00000398510 RTN4Q9NQC3 1192 aaKnown RBP3.54□□□□□ -1.84
CHD9-202ENST00000398510 POGZQ7Z3K3 1410 aa3.54□□□□□ -1.84
CHD9-202ENST00000398510 PHLDB1Q86UU1 1377 aa3.54□□□□□ -1.84
CHD9-202ENST00000398510 NCLP19338 710 aaKnown RBP3.54□□□□□ -1.84
CHD9-202ENST00000398510 CCNB3Q8WWL7 1395 aa3.54□□□□□ -1.84
CHD9-202ENST00000398510 PABPN1Q86U42 306 aaKnown RBP eCLIP3.54□□□□□ -1.84
CHD9-202ENST00000398510 PTMSP20962 102 aa3.54□□□□□ -1.84
CHD9-202ENST00000398510 ARXQ96QS3 562 aa3.54□□□□□ -1.84
CHD9-202ENST00000398510 ITGAEP38570 1179 aa3.54□□□□□ -1.84
CHD9-202ENST00000398510 ZNF326Q5BKZ1 582 aaKnown RBP3.53□□□□□ -1.84
CHD9-202ENST00000398510 PPARGC1BQ86YN6 1023 aaKnown RBP3.53□□□□□ -1.84
CHD9-202ENST00000398510 NUDCQ9Y266 331 aa3.53□□□□□ -1.84
CHD9-202ENST00000398510 BECN1Q14457 450 aa3.53□□□□□ -1.84
CHD9-202ENST00000398510 DAPK1P53355 1430 aa3.53□□□□□ -1.85
CHD9-202ENST00000398510 LRRFIP1Q32MZ4 808 aaKnown RBP3.52□□□□□ -1.85
CHD9-202ENST00000398510 EHBP1L1Q8N3D4 1523 aa3.52□□□□□ -1.85
CHD9-202ENST00000398510 TOP2BQ02880 1626 aa3.52□□□□□ -1.85
CHD9-202ENST00000398510 ROCK2O75116 1388 aaKnown RBP3.52□□□□□ -1.85
CHD9-202ENST00000398510 A0A0U1RQG5 324 aaPredicted RBP3.52□□□□□ -1.85
CHD9-202ENST00000398510 KIAA2012Q0VF49 1180 aa3.52□□□□□ -1.85
CHD9-202ENST00000398510 SPAG9O60271 1321 aaKnown RBP3.51□□□□□ -1.85
CHD9-202ENST00000398510 MRC2Q9UBG0 1479 aa3.51□□□□□ -1.85
CHD9-202ENST00000398510 HSP90B1P14625 803 aaKnown RBP3.51□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 58.2 ms