RNA–Protein interactions for RNA: ENST00000398022.6

TM9SF4-202, Transcript of transmembrane 9 superfamily member 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TM9SF4, Length 3,978 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF4-202ENST00000398022 PKNOX2Q96KN3 472 aa9.92□□□□□ -0.82
TM9SF4-202ENST00000398022 FBXO3Q9UK99 471 aa9.92□□□□□ -0.82
TM9SF4-202ENST00000398022 NEFLP07196 543 aa9.91□□□□□ -0.82
TM9SF4-202ENST00000398022 PBRM1Q86U86 1689 aa9.9□□□□□ -0.82
TM9SF4-202ENST00000398022 PDE4CQ08493 712 aa9.9□□□□□ -0.83
TM9SF4-202ENST00000398022 ARAP1Q96P48 1450 aa9.89□□□□□ -0.83
TM9SF4-202ENST00000398022 TRIM26Q12899 539 aaPredicted RBP9.89□□□□□ -0.83
TM9SF4-202ENST00000398022 LOC105371045A0A1W2PR82 267 aa9.87□□□□□ -0.83
TM9SF4-202ENST00000398022 ABCA5Q8WWZ7 1642 aa9.87□□□□□ -0.83
TM9SF4-202ENST00000398022 POLA1P09884 1462 aaPredicted RBP9.85□□□□□ -0.83
TM9SF4-202ENST00000398022 SHROOM2Q13796 1616 aa9.84□□□□□ -0.83
TM9SF4-202ENST00000398022 PPARGC1BQ86YN6 1023 aaKnown RBP9.83□□□□□ -0.84
TM9SF4-202ENST00000398022 CUX1P39880 1505 aa9.83□□□□□ -0.84
TM9SF4-202ENST00000398022 ZEB1P37275 1124 aaPredicted RBP9.83□□□□□ -0.84
TM9SF4-202ENST00000398022 ABCC8Q09428 1581 aa9.82□□□□□ -0.84
TM9SF4-202ENST00000398022 KIF13AQ9H1H9 1805 aa9.79□□□□□ -0.84
TM9SF4-202ENST00000398022 AEBP2Q6ZN18 517 aaPredicted RBP9.79□□□□□ -0.84
TM9SF4-202ENST00000398022 TRIM41Q8WV44 630 aa9.78□□□□□ -0.84
TM9SF4-202ENST00000398022 BIVM-ERCC5R4GMW8 1640 aa9.77□□□□□ -0.84
TM9SF4-202ENST00000398022 TAF7LQ5H9L4 462 aa9.77□□□□□ -0.85
TM9SF4-202ENST00000398022 AQRO60306 1485 aaKnown RBP eCLIP9.76□□□□□ -0.855e-7■■■■□ 23.8
TM9SF4-202ENST00000398022 CHMP4AQ9BY43 222 aa9.76□□□□□ -0.85
TM9SF4-202ENST00000398022 OSCARQ8IYS5 282 aa9.76□□□□□ -0.85
TM9SF4-202ENST00000398022 RAD54L2Q9Y4B4 1467 aa9.75□□□□□ -0.85
TM9SF4-202ENST00000398022 HAP1P54257 671 aaPredicted RBP9.74□□□□□ -0.85
TM9SF4-202ENST00000398022 ERCC6L2Q5T890 1561 aa9.74□□□□□ -0.85
TM9SF4-202ENST00000398022 TMEM132AQ24JP5 1023 aa9.73□□□□□ -0.85
TM9SF4-202ENST00000398022 ANP32EQ9BTT0 268 aa9.73□□□□□ -0.85
TM9SF4-202ENST00000398022 CEP170Q5SW79 1584 aa9.72□□□□□ -0.85
TM9SF4-202ENST00000398022 PLCB2Q00722 1185 aa9.72□□□□□ -0.85
TM9SF4-202ENST00000398022 FGD5Q6ZNL6 1462 aa9.72□□□□□ -0.85
TM9SF4-202ENST00000398022 BRD2P25440 801 aaKnown RBP9.72□□□□□ -0.85
TM9SF4-202ENST00000398022 MAGI1Q96QZ7 1491 aaPredicted RBP9.72□□□□□ -0.85
TM9SF4-202ENST00000398022 SNAPC4Q5SXM2 1469 aa9.71□□□□□ -0.85
TM9SF4-202ENST00000398022 ANO8Q9HCE9 1232 aaPredicted RBP9.71□□□□□ -0.86
TM9SF4-202ENST00000398022 ADAMTS12P58397 1594 aa9.71□□□□□ -0.86
TM9SF4-202ENST00000398022 ABCA10Q8WWZ4 1543 aa9.69□□□□□ -0.86
TM9SF4-202ENST00000398022 SYNJ1O43426 1573 aa9.69□□□□□ -0.86
TM9SF4-202ENST00000398022 SYNJ2O15056 1496 aa9.67□□□□□ -0.86
TM9SF4-202ENST00000398022 TOP2BQ02880 1626 aa9.66□□□□□ -0.86
TM9SF4-202ENST00000398022 SAMD1Q6SPF0 538 aaPredicted RBP9.66□□□□□ -0.86
TM9SF4-202ENST00000398022 CDK11AQ9UQ88 783 aaPredicted RBP9.65□□□□□ -0.86
TM9SF4-202ENST00000398022 CDK11BP21127 795 aaKnown RBP9.65□□□□□ -0.87
TM9SF4-202ENST00000398022 DHX37Q8IY37 1157 aaKnown RBP9.64□□□□□ -0.87
TM9SF4-202ENST00000398022 CNKSR2Q8WXI2 1034 aa9.64□□□□□ -0.87
TM9SF4-202ENST00000398022 BCL11BQ9C0K0 894 aaPredicted RBP9.64□□□□□ -0.87
TM9SF4-202ENST00000398022 FGD1P98174 961 aa9.63□□□□□ -0.87
TM9SF4-202ENST00000398022 NUP160Q12769 1436 aa9.63□□□□□ -0.87
TM9SF4-202ENST00000398022 RUSC2Q8N2Y8 1516 aa9.63□□□□□ -0.87
TM9SF4-202ENST00000398022 GRIN2BQ13224 1484 aa9.62□□□□□ -0.87
TM9SF4-202ENST00000398022 PPRC1Q5VV67 1664 aaKnown RBP9.61□□□□□ -0.87
TM9SF4-202ENST00000398022 SOGA1O94964 1423 aa9.6□□□□□ -0.87
TM9SF4-202ENST00000398022 GRIN2AQ12879 1464 aa9.58□□□□□ -0.88
TM9SF4-202ENST00000398022 ADCY10Q96PN6 1610 aa9.57□□□□□ -0.88
TM9SF4-202ENST00000398022 ERICH3Q5RHP9 1530 aa9.57□□□□□ -0.88
TM9SF4-202ENST00000398022 TDRD9Q8NDG6 1382 aaKnown RBP9.57□□□□□ -0.88
TM9SF4-202ENST00000398022 GAPVD1Q14C86 1478 aa9.56□□□□□ -0.88
TM9SF4-202ENST00000398022 DIP2BQ9P265 1576 aa9.54□□□□□ -0.88
TM9SF4-202ENST00000398022 HSP90B1P14625 803 aaKnown RBP9.53□□□□□ -0.88
TM9SF4-202ENST00000398022 MAPKBP1O60336 1514 aa9.53□□□□□ -0.88
TM9SF4-202ENST00000398022 UBTFP17480 764 aaKnown RBP9.51□□□□□ -0.89
TM9SF4-202ENST00000398022 ZNF326Q5BKZ1 582 aaKnown RBP9.49□□□□□ -0.89
TM9SF4-202ENST00000398022 CCER1Q8TC90 406 aaPredicted RBP9.48□□□□□ -0.89
TM9SF4-202ENST00000398022 ERICH6BQ5W0A0 696 aa9.47□□□□□ -0.89
TM9SF4-202ENST00000398022 CYB5RLQ6IPT4 315 aa9.47□□□□□ -0.89
TM9SF4-202ENST00000398022 HMGB1P09429 215 aaKnown RBP9.46□□□□□ -0.89
TM9SF4-202ENST00000398022 RSPH4AQ5TD94 716 aa9.45□□□□□ -0.9
TM9SF4-202ENST00000398022 CUL7Q14999 1698 aa9.44□□□□□ -0.9
TM9SF4-202ENST00000398022 MAP3K4Q9Y6R4 1608 aa9.44□□□□□ -0.9
TM9SF4-202ENST00000398022 FHAD1B1AJZ9 1412 aa9.43□□□□□ -0.9
TM9SF4-202ENST00000398022 CLSPNQ9HAW4 1339 aa9.43□□□□□ -0.9
TM9SF4-202ENST00000398022 CCDC136Q96JN2 1154 aa9.43□□□□□ -0.9
TM9SF4-202ENST00000398022 AAMPQ13685 434 aa9.43□□□□□ -0.9
TM9SF4-202ENST00000398022 ABCC10Q5T3U5 1492 aa9.41□□□□□ -0.9
TM9SF4-202ENST00000398022 BCCIPQ9P287 314 aaKnown RBP eCLIP9.41□□□□□ -0.9
TM9SF4-202ENST00000398022 GLI2P10070 1586 aa9.4□□□□□ -0.9
TM9SF4-202ENST00000398022 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP9.4□□□□□ -0.9
TM9SF4-202ENST00000398022 VSIG10Q8N0Z9 540 aa9.4□□□□□ -0.9
TM9SF4-202ENST00000398022 RSPH6AQ9H0K4 717 aa9.39□□□□□ -0.91
TM9SF4-202ENST00000398022 A0A0U1RQG5 324 aaPredicted RBP9.38□□□□□ -0.91
TM9SF4-202ENST00000398022 POLR3GLQ9BT43 218 aa9.38□□□□□ -0.91
TM9SF4-202ENST00000398022 SALL2Q9Y467 1007 aaPredicted RBP9.38□□□□□ -0.91
TM9SF4-202ENST00000398022 WRNQ14191 1432 aaPredicted RBP eCLIP9.37□□□□□ -0.91
TM9SF4-202ENST00000398022 IGSF3O75054 1194 aa9.37□□□□□ -0.91
TM9SF4-202ENST00000398022 ACIN1Q9UKV3 1341 aaKnown RBP9.37□□□□□ -0.91
TM9SF4-202ENST00000398022 ABCC2Q92887 1545 aa9.36□□□□□ -0.91
TM9SF4-202ENST00000398022 NAP1L5Q96NT1 182 aaPredicted RBP9.36□□□□□ -0.91
TM9SF4-202ENST00000398022 SLC4A1APQ9BWU0 796 aaKnown RBP9.36□□□□□ -0.91
TM9SF4-202ENST00000398022 PAXIP1Q6ZW49 1069 aaPredicted RBP9.35□□□□□ -0.91
TM9SF4-202ENST00000398022 EEA1Q15075 1411 aa9.34□□□□□ -0.91
TM9SF4-202ENST00000398022 DIEXFQ68CQ4 756 aaKnown RBP9.34□□□□□ -0.91
TM9SF4-202ENST00000398022 GLIPR1L2Q4G1C9 344 aa9.33□□□□□ -0.92
TM9SF4-202ENST00000398022 PPP6R1Q9UPN7 881 aa9.33□□□□□ -0.92
TM9SF4-202ENST00000398022 DISP1Q96F81 1524 aa9.33□□□□□ -0.92
TM9SF4-202ENST00000398022 TSPOAP1O95153 1857 aa9.33□□□□□ -0.92
TM9SF4-202ENST00000398022 ZCCHC11Q5TAX3 1644 aaKnown RBP9.32□□□□□ -0.92
TM9SF4-202ENST00000398022 CEP162Q5TB80 1403 aa9.32□□□□□ -0.92
TM9SF4-202ENST00000398022 PRG4Q92954 1404 aaPredicted RBP9.32□□□□□ -0.92
TM9SF4-202ENST00000398022 TNIKQ9UKE5 1360 aa9.31□□□□□ -0.92
TM9SF4-202ENST00000398022 CTTNBP2Q8WZ74 1663 aa9.31□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms