RNA–Protein interactions for RNA: ENST00000397760.8

PDLIM2-204, Transcript of PDZ and LIM domain 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PDLIM2, Length 1,847 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM2-204ENST00000397760 GRIN2AQ12879 1464 aa30.63■■■□□ 2.49
PDLIM2-204ENST00000397760 CTTNBP2Q8WZ74 1663 aa30.54■■■□□ 2.48
PDLIM2-204ENST00000397760 ARHGAP35Q9NRY4 1499 aa30.44■■■□□ 2.46
PDLIM2-204ENST00000397760 KIAA0586Q9BVV6 1533 aa30.44■■■□□ 2.46
PDLIM2-204ENST00000397760 NUP160Q12769 1436 aa30.43■■■□□ 2.46
PDLIM2-204ENST00000397760 CEP170Q5SW79 1584 aa30.42■■■□□ 2.46
PDLIM2-204ENST00000397760 IQGAP2Q13576 1575 aa30.4■■■□□ 2.46
PDLIM2-204ENST00000397760 ARAP1Q96P48 1450 aa30.38■■■□□ 2.45
PDLIM2-204ENST00000397760 CHD1O14646 1710 aa30.36■■■□□ 2.45
PDLIM2-204ENST00000397760 P3H3Q8IVL6 736 aa30.34■■■□□ 2.45
PDLIM2-204ENST00000397760 EFCAB5A4FU69 1503 aa30.33■■■□□ 2.45
PDLIM2-204ENST00000397760 VPS8Q8N3P4 1428 aa30.32■■■□□ 2.44
PDLIM2-204ENST00000397760 HRCP23327 699 aa30.31■■■□□ 2.44
PDLIM2-204ENST00000397760 UGGT2Q9NYU1 1516 aa30.27■■■□□ 2.44
PDLIM2-204ENST00000397760 SAMD9Q5K651 1589 aa30.25■■■□□ 2.43
PDLIM2-204ENST00000397760 FHOD3Q2V2M9 1422 aa30.25■■■□□ 2.43
PDLIM2-204ENST00000397760 JPH4Q96JJ6 628 aa30.24■■■□□ 2.43
PDLIM2-204ENST00000397760 DISP1Q96F81 1524 aa30.15■■■□□ 2.42
PDLIM2-204ENST00000397760 PCGF6Q9BYE7 350 aa30.13■■■□□ 2.41
PDLIM2-204ENST00000397760 FMN1Q68DA7 1419 aa30.1■■■□□ 2.41
PDLIM2-204ENST00000397760 KIAA0556O60303 1618 aa30.09■■■□□ 2.41
PDLIM2-204ENST00000397760 CARMIL2Q6F5E8 1435 aa30.09■■■□□ 2.41
PDLIM2-204ENST00000397760 CLASP1Q7Z460 1538 aa30.07■■■□□ 2.4
PDLIM2-204ENST00000397760 APLP2Q06481 763 aa30.07■■■□□ 2.4
PDLIM2-204ENST00000397760 OSCARQ8IYS5 282 aa30.05■■■□□ 2.4
PDLIM2-204ENST00000397760 PRG4Q92954 1404 aaPredicted RBP30.05■■■□□ 2.4
PDLIM2-204ENST00000397760 PPARGC1BQ86YN6 1023 aaKnown RBP30.04■■■□□ 2.4
PDLIM2-204ENST00000397760 SHROOM2Q13796 1616 aa30■■■□□ 2.39
PDLIM2-204ENST00000397760 ATP1B4Q9UN42 357 aaPredicted RBP29.99■■■□□ 2.39
PDLIM2-204ENST00000397760 CASKIN1Q8WXD9 1431 aa29.99■■■□□ 2.39
PDLIM2-204ENST00000397760 TTBK1Q5TCY1 1321 aaPredicted RBP29.98■■■□□ 2.39
PDLIM2-204ENST00000397760 PCF11O94913 1555 aaKnown RBP29.97■■■□□ 2.39
PDLIM2-204ENST00000397760 FYCO1Q9BQS8 1478 aa29.95■■■□□ 2.39
PDLIM2-204ENST00000397760 TRIM26Q12899 539 aaPredicted RBP29.91■■■□□ 2.38
PDLIM2-204ENST00000397760 ERCC6L2Q5T890 1561 aa29.84■■■□□ 2.37
PDLIM2-204ENST00000397760 PTPRGP23470 1445 aa29.84■■■□□ 2.37
PDLIM2-204ENST00000397760 MAP3K1Q13233 1512 aa29.83■■■□□ 2.37
PDLIM2-204ENST00000397760 KANK4Q5T7N3 995 aaPredicted RBP29.82■■■□□ 2.36
PDLIM2-204ENST00000397760 TIAM1Q13009 1591 aa29.8■■■□□ 2.36
PDLIM2-204ENST00000397760 PLB1Q6P1J6 1458 aa29.78■■■□□ 2.36
PDLIM2-204ENST00000397760 HECW1Q76N89 1606 aa29.78■■■□□ 2.36
PDLIM2-204ENST00000397760 RAPGEF6Q8TEU7 1601 aa29.75■■■□□ 2.35
PDLIM2-204ENST00000397760 CCDC18Q5T9S5 1454 aa29.71■■■□□ 2.35
PDLIM2-204ENST00000397760 CFAP43Q8NDM7 1665 aa29.71■■■□□ 2.35
PDLIM2-204ENST00000397760 EPRSP07814 1512 aaKnown RBP29.71■■■□□ 2.35
PDLIM2-204ENST00000397760 NUP153P49790 1475 aaKnown RBP29.71■■■□□ 2.35
PDLIM2-204ENST00000397760 ARID3CA6NKF2 412 aa29.71■■■□□ 2.35
PDLIM2-204ENST00000397760 LRRC9Q6ZRR7 1453 aa29.7■■■□□ 2.34
PDLIM2-204ENST00000397760 ABCA8O94911 1581 aa29.69■■■□□ 2.34
PDLIM2-204ENST00000397760 LRRIQ1Q96JM4 1722 aa29.67■■■□□ 2.34
PDLIM2-204ENST00000397760 UACAQ9BZF9 1416 aa29.65■■■□□ 2.34
PDLIM2-204ENST00000397760 CDK13Q14004 1512 aaKnown RBP29.64■■■□□ 2.33
PDLIM2-204ENST00000397760 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP29.61■■■□□ 2.33
PDLIM2-204ENST00000397760 HNRNPUL2Q1KMD3 747 aaKnown RBP29.61■■■□□ 2.33
PDLIM2-204ENST00000397760 MTUS2Q5JR59 1369 aa29.61■■■□□ 2.33
PDLIM2-204ENST00000397760 CDK11AQ9UQ88 783 aaPredicted RBP29.55■■■□□ 2.32
PDLIM2-204ENST00000397760 ATP10BO94823 1461 aa29.53■■■□□ 2.32
PDLIM2-204ENST00000397760 ABCC2Q92887 1545 aa29.53■■■□□ 2.32
PDLIM2-204ENST00000397760 MAGI3Q5TCQ9 1506 aa29.52■■■□□ 2.32
PDLIM2-204ENST00000397760 EHBP1L1Q8N3D4 1523 aa29.51■■■□□ 2.31
PDLIM2-204ENST00000397760 UHRF1BP1LA0JNW5 1464 aa29.49■■■□□ 2.31
PDLIM2-204ENST00000397760 ARHGEF11O15085 1522 aa29.48■■■□□ 2.31
PDLIM2-204ENST00000397760 PLEKHD1A6NEE1 506 aa29.43■■■□□ 2.3
PDLIM2-204ENST00000397760 PHLDB1Q86UU1 1377 aa29.43■■■□□ 2.3
PDLIM2-204ENST00000397760 TROQ12816 1431 aaPredicted RBP29.4■■■□□ 2.3
PDLIM2-204ENST00000397760 ZEB1P37275 1124 aaPredicted RBP29.4■■■□□ 2.3
PDLIM2-204ENST00000397760 NCOA2Q15596 1464 aa29.4■■■□□ 2.3
PDLIM2-204ENST00000397760 SUPT6HQ7KZ85 1726 aaKnown RBP29.38■■■□□ 2.29
PDLIM2-204ENST00000397760 KDM5BQ9UGL1 1544 aa29.37■■■□□ 2.29
PDLIM2-204ENST00000397760 ADCY10Q96PN6 1610 aa29.36■■■□□ 2.29
PDLIM2-204ENST00000397760 RRBP1Q9P2E9 1410 aaKnown RBP29.34■■■□□ 2.29
PDLIM2-204ENST00000397760 RIMBP3CA6NJZ7 1639 aa29.33■■■□□ 2.29
PDLIM2-204ENST00000397760 RIMBP3BA6NNM3 1639 aa29.33■■■□□ 2.29
PDLIM2-204ENST00000397760 RIMBP3Q9UFD9 1639 aa29.33■■■□□ 2.29
PDLIM2-204ENST00000397760 CCNB3Q8WWL7 1395 aa29.31■■■□□ 2.28
PDLIM2-204ENST00000397760 ZCCHC11Q5TAX3 1644 aaKnown RBP29.29■■■□□ 2.28
PDLIM2-204ENST00000397760 CYB5RLQ6IPT4 315 aa29.28■■■□□ 2.28
PDLIM2-204ENST00000397760 MYOM3Q5VTT5 1437 aa29.27■■■□□ 2.28
PDLIM2-204ENST00000397760 NPM1P06748 294 aaKnown RBP eCLIP29.24■■■□□ 2.27
PDLIM2-204ENST00000397760 FGD6Q6ZV73 1430 aa29.23■■■□□ 2.27
PDLIM2-204ENST00000397760 KIF14Q15058 1648 aa29.21■■■□□ 2.27
PDLIM2-204ENST00000397760 FAM50AQ14320 339 aaKnown RBP29.2■■■□□ 2.26
PDLIM2-204ENST00000397760 KCNH8Q96L42 1107 aa29.17■■■□□ 2.26
PDLIM2-204ENST00000397760 ABCC10Q5T3U5 1492 aa29.14■■■□□ 2.26
PDLIM2-204ENST00000397760 MIA2Q96PC5 1412 aa29.14■■■□□ 2.25
PDLIM2-204ENST00000397760 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP29.13■■■□□ 2.25
PDLIM2-204ENST00000397760 GPATCH8Q9UKJ3 1502 aaKnown RBP29.12■■■□□ 2.25
PDLIM2-204ENST00000397760 WDR7Q9Y4E6 1490 aa29.11■■■□□ 2.25
PDLIM2-204ENST00000397760 ASXL2Q76L83 1435 aa29.1■■■□□ 2.25
PDLIM2-204ENST00000397760 ITGAEP38570 1179 aa29.09■■■□□ 2.25
PDLIM2-204ENST00000397760 CFDP1Q9UEE9 299 aaPredicted RBP29.08■■■□□ 2.25
PDLIM2-204ENST00000397760 PTPN23Q9H3S7 1636 aa29.07■■■□□ 2.24
PDLIM2-204ENST00000397760 TCOF1Q13428 1488 aaKnown RBP29.05■■■□□ 2.24
PDLIM2-204ENST00000397760 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP29.05■■■□□ 2.24
PDLIM2-204ENST00000397760 ITSN2Q9NZM3 1697 aa29.03■■■□□ 2.24
PDLIM2-204ENST00000397760 TTC37Q6PGP7 1564 aa29■■■□□ 2.23
PDLIM2-204ENST00000397760 ZNF644Q9H582 1327 aaPredicted RBP28.99■■■□□ 2.23
PDLIM2-204ENST00000397760 ZNF777Q9ULD5 760 aaPredicted RBP28.99■■■□□ 2.23
PDLIM2-204ENST00000397760 CDC42BPAQ5VT25 1732 aa28.98■■■□□ 2.23
PDLIM2-204ENST00000397760 MAPKBP1O60336 1514 aa28.92■■■□□ 2.22
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms