RNA–Protein interactions for RNA: ENST00000397396.5

TSPAN4-202, Transcript of tetraspanin 4, humanhuman

TSL 5 BASIC

Gene TSPAN4, Length 1,332 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TSPAN4-202ENST00000397396 NUP160Q12769 1436 aa37.95■■■■□ 3.67
TSPAN4-202ENST00000397396 CEP170Q5SW79 1584 aa37.89■■■■□ 3.66
TSPAN4-202ENST00000397396 KIAA0586Q9BVV6 1533 aa37.88■■■■□ 3.66
TSPAN4-202ENST00000397396 IQGAP2Q13576 1575 aa37.83■■■■□ 3.65
TSPAN4-202ENST00000397396 CEP162Q5TB80 1403 aa37.81■■■■□ 3.64
TSPAN4-202ENST00000397396 CLIP1P30622 1438 aa37.72■■■■□ 3.63
TSPAN4-202ENST00000397396 EFCAB5A4FU69 1503 aa37.68■■■■□ 3.62
TSPAN4-202ENST00000397396 UGGT2Q9NYU1 1516 aa37.66■■■■□ 3.62
TSPAN4-202ENST00000397396 CLASP1Q7Z460 1538 aa37.65■■■■□ 3.62
TSPAN4-202ENST00000397396 OSCARQ8IYS5 282 aa37.62■■■■□ 3.61
TSPAN4-202ENST00000397396 RANGAP1P46060 587 aaPredicted RBP37.57■■■■□ 3.6
TSPAN4-202ENST00000397396 SAMD9Q5K651 1589 aa37.56■■■■□ 3.6
TSPAN4-202ENST00000397396 ARHGAP35Q9NRY4 1499 aa37.55■■■■□ 3.6
TSPAN4-202ENST00000397396 SHROOM2Q13796 1616 aa37.53■■■■□ 3.6
TSPAN4-202ENST00000397396 JPH4Q96JJ6 628 aa37.53■■■■□ 3.6
TSPAN4-202ENST00000397396 CARMIL2Q6F5E8 1435 aa37.5■■■■□ 3.59
TSPAN4-202ENST00000397396 KIAA0556O60303 1618 aa37.45■■■■□ 3.59
TSPAN4-202ENST00000397396 DISP1Q96F81 1524 aa37.43■■■■□ 3.58
TSPAN4-202ENST00000397396 ARAP1Q96P48 1450 aa37.4■■■■□ 3.58
TSPAN4-202ENST00000397396 PRG4Q92954 1404 aaPredicted RBP37.39■■■■□ 3.58
TSPAN4-202ENST00000397396 FHOD3Q2V2M9 1422 aa37.35■■■■□ 3.57
TSPAN4-202ENST00000397396 VPS8Q8N3P4 1428 aa37.31■■■■□ 3.56
TSPAN4-202ENST00000397396 FMN1Q68DA7 1419 aa37.31■■■■□ 3.56
TSPAN4-202ENST00000397396 P3H3Q8IVL6 736 aa37.3■■■■□ 3.56
TSPAN4-202ENST00000397396 DNAJC5Q9H3Z4 198 aa37.17■■■■□ 3.54
TSPAN4-202ENST00000397396 ERCC6L2Q5T890 1561 aa37.13■■■■□ 3.53
TSPAN4-202ENST00000397396 PTPRGP23470 1445 aa37.11■■■■□ 3.53
TSPAN4-202ENST00000397396 FYCO1Q9BQS8 1478 aa37.1■■■■□ 3.53
TSPAN4-202ENST00000397396 CASKIN1Q8WXD9 1431 aa37.08■■■■□ 3.53
TSPAN4-202ENST00000397396 PCF11O94913 1555 aaKnown RBP37.06■■■■□ 3.52
TSPAN4-202ENST00000397396 ARHGEF11O15085 1522 aa37.01■■■■□ 3.51
TSPAN4-202ENST00000397396 HECW1Q76N89 1606 aa37■■■■□ 3.51
TSPAN4-202ENST00000397396 RAPGEF6Q8TEU7 1601 aa36.99■■■■□ 3.51
TSPAN4-202ENST00000397396 TTBK1Q5TCY1 1321 aaPredicted RBP36.97■■■■□ 3.51
TSPAN4-202ENST00000397396 ABCA8O94911 1581 aa36.95■■■■□ 3.51
TSPAN4-202ENST00000397396 APLP2Q06481 763 aa36.94■■■■□ 3.5
TSPAN4-202ENST00000397396 PLB1Q6P1J6 1458 aa36.91■■■■□ 3.5
TSPAN4-202ENST00000397396 UACAQ9BZF9 1416 aa36.91■■■■□ 3.5
TSPAN4-202ENST00000397396 CCDC18Q5T9S5 1454 aa36.89■■■■□ 3.5
TSPAN4-202ENST00000397396 MAP3K1Q13233 1512 aa36.88■■■■□ 3.49
TSPAN4-202ENST00000397396 ATP1B4Q9UN42 357 aaPredicted RBP36.86■■■■□ 3.49
TSPAN4-202ENST00000397396 RIMBP3CA6NJZ7 1639 aa36.86■■■■□ 3.49
TSPAN4-202ENST00000397396 RIMBP3BA6NNM3 1639 aa36.86■■■■□ 3.49
TSPAN4-202ENST00000397396 RIMBP3Q9UFD9 1639 aa36.86■■■■□ 3.49
TSPAN4-202ENST00000397396 UHRF1BP1LA0JNW5 1464 aa36.83■■■■□ 3.49
TSPAN4-202ENST00000397396 ABCC2Q92887 1545 aa36.83■■■■□ 3.49
TSPAN4-202ENST00000397396 NUP153P49790 1475 aaKnown RBP36.82■■■■□ 3.49
TSPAN4-202ENST00000397396 CFAP43Q8NDM7 1665 aa36.79■■■■□ 3.48
TSPAN4-202ENST00000397396 TIAM1Q13009 1591 aa36.78■■■■□ 3.48
TSPAN4-202ENST00000397396 EPRSP07814 1512 aaKnown RBP36.78■■■■□ 3.48
TSPAN4-202ENST00000397396 LRRIQ1Q96JM4 1722 aa36.7■■■■□ 3.47
TSPAN4-202ENST00000397396 ADCY10Q96PN6 1610 aa36.66■■■■□ 3.46
TSPAN4-202ENST00000397396 CDK13Q14004 1512 aaKnown RBP36.65■■■■□ 3.46
TSPAN4-202ENST00000397396 CDK11AQ9UQ88 783 aaPredicted RBP36.63■■■■□ 3.45
TSPAN4-202ENST00000397396 KDM5BQ9UGL1 1544 aa36.62■■■■□ 3.45
TSPAN4-202ENST00000397396 ATP10BO94823 1461 aa36.62■■■■□ 3.45
TSPAN4-202ENST00000397396 LRRC9Q6ZRR7 1453 aa36.6■■■■□ 3.45
TSPAN4-202ENST00000397396 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP36.59■■■■□ 3.45
TSPAN4-202ENST00000397396 HNRNPUL2Q1KMD3 747 aaKnown RBP36.59■■■■□ 3.45
TSPAN4-202ENST00000397396 MTUS2Q5JR59 1369 aa36.57■■■■□ 3.44
TSPAN4-202ENST00000397396 EHBP1L1Q8N3D4 1523 aa36.57■■■■□ 3.44
TSPAN4-202ENST00000397396 ARID3CA6NKF2 412 aa36.55■■■■□ 3.44
TSPAN4-202ENST00000397396 CYB5RLQ6IPT4 315 aa36.55■■■■□ 3.44
TSPAN4-202ENST00000397396 ZCCHC11Q5TAX3 1644 aaKnown RBP36.53■■■■□ 3.44
TSPAN4-202ENST00000397396 NPM1P06748 294 aaKnown RBP eCLIP36.5■■■■□ 3.43
TSPAN4-202ENST00000397396 KANK4Q5T7N3 995 aaPredicted RBP36.49■■■■□ 3.43
TSPAN4-202ENST00000397396 PLEKHD1A6NEE1 506 aa36.47■■■■□ 3.43
TSPAN4-202ENST00000397396 TROQ12816 1431 aaPredicted RBP36.46■■■■□ 3.43
TSPAN4-202ENST00000397396 MAGI3Q5TCQ9 1506 aa36.43■■■■□ 3.42
TSPAN4-202ENST00000397396 SUPT6HQ7KZ85 1726 aaKnown RBP36.4■■■■□ 3.42
TSPAN4-202ENST00000397396 PPARGC1BQ86YN6 1023 aaKnown RBP36.38■■■■□ 3.41
TSPAN4-202ENST00000397396 KIF14Q15058 1648 aa36.32■■■■□ 3.41
TSPAN4-202ENST00000397396 WDR7Q9Y4E6 1490 aa36.32■■■■□ 3.4
TSPAN4-202ENST00000397396 MAPKBP1O60336 1514 aa36.29■■■■□ 3.4
TSPAN4-202ENST00000397396 NCOA2Q15596 1464 aa36.29■■■■□ 3.4
TSPAN4-202ENST00000397396 ASXL2Q76L83 1435 aa36.27■■■■□ 3.4
TSPAN4-202ENST00000397396 PHLDB1Q86UU1 1377 aa36.15■■■■□ 3.38
TSPAN4-202ENST00000397396 CCNB3Q8WWL7 1395 aa36.14■■■■□ 3.38
TSPAN4-202ENST00000397396 ABCC10Q5T3U5 1492 aa36.13■■■■□ 3.37
TSPAN4-202ENST00000397396 MYOM3Q5VTT5 1437 aa36.13■■■■□ 3.37
TSPAN4-202ENST00000397396 ITSN2Q9NZM3 1697 aa36.11■■■■□ 3.37
TSPAN4-202ENST00000397396 KCNH8Q96L42 1107 aa36.08■■■■□ 3.37
TSPAN4-202ENST00000397396 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP36.08■■■■□ 3.37
TSPAN4-202ENST00000397396 MIA2Q96PC5 1412 aa36.06■■■■□ 3.36
TSPAN4-202ENST00000397396 RRBP1Q9P2E9 1410 aaKnown RBP36.06■■■■□ 3.36
TSPAN4-202ENST00000397396 TRIM26Q12899 539 aaPredicted RBP36.06■■■■□ 3.36
TSPAN4-202ENST00000397396 ABCA9Q8IUA7 1624 aa36.04■■■■□ 3.36
TSPAN4-202ENST00000397396 TTC37Q6PGP7 1564 aa36.04■■■■□ 3.36
TSPAN4-202ENST00000397396 FGD6Q6ZV73 1430 aa36.03■■■■□ 3.36
TSPAN4-202ENST00000397396 GPATCH8Q9UKJ3 1502 aaKnown RBP36.02■■■■□ 3.36
TSPAN4-202ENST00000397396 MYO5CQ9NQX4 1742 aa35.98■■■■□ 3.35
TSPAN4-202ENST00000397396 PREX2Q70Z35 1606 aa35.98■■■■□ 3.35
TSPAN4-202ENST00000397396 CDC42BPAQ5VT25 1732 aa35.97■■■■□ 3.35
TSPAN4-202ENST00000397396 GLI2P10070 1586 aa35.97■■■■□ 3.35
TSPAN4-202ENST00000397396 ARAP3Q8WWN8 1544 aa35.95■■■■□ 3.35
TSPAN4-202ENST00000397396 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP35.94■■■■□ 3.341e-6■■■■■ 46.2
TSPAN4-202ENST00000397396 CFDP1Q9UEE9 299 aaPredicted RBP35.92■■■■□ 3.34
TSPAN4-202ENST00000397396 DIP2BQ9P265 1576 aa35.92■■■■□ 3.34
TSPAN4-202ENST00000397396 PLCH2O75038 1416 aa35.91■■■■□ 3.34
TSPAN4-202ENST00000397396 PTPN23Q9H3S7 1636 aa35.9■■■■□ 3.34
Retrieved 100 of 20,778 RNA–protein pairs in 9 ms