RNA–Protein interactions for RNA: ENST00000397200.8

CAPN3-207, Transcript of calpain 3, humanhuman

TSL 1 (best) BASIC

Gene CAPN3, Length 1,643 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN3-207ENST00000397200 NUP160Q12769 1436 aa23.99■■□□□ 1.43
CAPN3-207ENST00000397200 TNIKQ9UKE5 1360 aa23.93■■□□□ 1.42
CAPN3-207ENST00000397200 KIAA0586Q9BVV6 1533 aa23.92■■□□□ 1.42
CAPN3-207ENST00000397200 OSCARQ8IYS5 282 aa23.9■■□□□ 1.42
CAPN3-207ENST00000397200 IQGAP2Q13576 1575 aa23.89■■□□□ 1.42
CAPN3-207ENST00000397200 CLASP1Q7Z460 1538 aa23.86■■□□□ 1.41
CAPN3-207ENST00000397200 RANGAP1P46060 587 aaPredicted RBP23.79■■□□□ 1.4
CAPN3-207ENST00000397200 UGGT2Q9NYU1 1516 aa23.76■■□□□ 1.39
CAPN3-207ENST00000397200 SHROOM2Q13796 1616 aa23.76■■□□□ 1.39
CAPN3-207ENST00000397200 JPH4Q96JJ6 628 aa23.75■■□□□ 1.39
CAPN3-207ENST00000397200 CEP162Q5TB80 1403 aa23.75■■□□□ 1.39
CAPN3-207ENST00000397200 CLIP1P30622 1438 aa23.72■■□□□ 1.39
CAPN3-207ENST00000397200 EFCAB5A4FU69 1503 aa23.69■■□□□ 1.38
CAPN3-207ENST00000397200 SAMD9Q5K651 1589 aa23.69■■□□□ 1.38
CAPN3-207ENST00000397200 PRG4Q92954 1404 aaPredicted RBP23.67■■□□□ 1.38
CAPN3-207ENST00000397200 KIAA0556O60303 1618 aa23.66■■□□□ 1.38
CAPN3-207ENST00000397200 CARMIL2Q6F5E8 1435 aa23.66■■□□□ 1.38
CAPN3-207ENST00000397200 ARHGAP35Q9NRY4 1499 aa23.66■■□□□ 1.38
CAPN3-207ENST00000397200 DISP1Q96F81 1524 aa23.66■■□□□ 1.38
CAPN3-207ENST00000397200 P3H3Q8IVL6 736 aa23.61■■□□□ 1.37
CAPN3-207ENST00000397200 ERCC6L2Q5T890 1561 aa23.6■■□□□ 1.37
CAPN3-207ENST00000397200 FHOD3Q2V2M9 1422 aa23.58■■□□□ 1.37
CAPN3-207ENST00000397200 ARAP1Q96P48 1450 aa23.55■■□□□ 1.36
CAPN3-207ENST00000397200 ARHGEF11O15085 1522 aa23.52■■□□□ 1.36
CAPN3-207ENST00000397200 TTBK1Q5TCY1 1321 aaPredicted RBP23.49■■□□□ 1.35
CAPN3-207ENST00000397200 RIMBP3CA6NJZ7 1639 aa23.47■■□□□ 1.35
CAPN3-207ENST00000397200 RIMBP3BA6NNM3 1639 aa23.47■■□□□ 1.35
CAPN3-207ENST00000397200 RIMBP3Q9UFD9 1639 aa23.47■■□□□ 1.35
CAPN3-207ENST00000397200 FMN1Q68DA7 1419 aa23.47■■□□□ 1.35
CAPN3-207ENST00000397200 PTPRGP23470 1445 aa23.46■■□□□ 1.35
CAPN3-207ENST00000397200 VPS8Q8N3P4 1428 aa23.42■■□□□ 1.34
CAPN3-207ENST00000397200 RAPGEF6Q8TEU7 1601 aa23.36■■□□□ 1.33
CAPN3-207ENST00000397200 PCF11O94913 1555 aaKnown RBP23.36■■□□□ 1.33
CAPN3-207ENST00000397200 PLB1Q6P1J6 1458 aa23.35■■□□□ 1.33
CAPN3-207ENST00000397200 ABCA8O94911 1581 aa23.34■■□□□ 1.33
CAPN3-207ENST00000397200 CASKIN1Q8WXD9 1431 aa23.34■■□□□ 1.33
CAPN3-207ENST00000397200 DNAJC5Q9H3Z4 198 aa23.33■■□□□ 1.33
CAPN3-207ENST00000397200 FYCO1Q9BQS8 1478 aa23.33■■□□□ 1.33
CAPN3-207ENST00000397200 UACAQ9BZF9 1416 aa23.33■■□□□ 1.33
CAPN3-207ENST00000397200 PCGF6Q9BYE7 350 aa23.33■■□□□ 1.32
CAPN3-207ENST00000397200 HECW1Q76N89 1606 aa23.31■■□□□ 1.32
CAPN3-207ENST00000397200 ATP1B4Q9UN42 357 aaPredicted RBP23.3■■□□□ 1.32
CAPN3-207ENST00000397200 TRIM26Q12899 539 aaPredicted RBP23.3■■□□□ 1.32
CAPN3-207ENST00000397200 ABCC2Q92887 1545 aa23.28■■□□□ 1.32
CAPN3-207ENST00000397200 CYB5RLQ6IPT4 315 aa23.26■■□□□ 1.31
CAPN3-207ENST00000397200 UHRF1BP1LA0JNW5 1464 aa23.26■■□□□ 1.31
CAPN3-207ENST00000397200 NUP153P49790 1475 aaKnown RBP23.25■■□□□ 1.31
CAPN3-207ENST00000397200 ADCY10Q96PN6 1610 aa23.25■■□□□ 1.31
CAPN3-207ENST00000397200 LRRIQ1Q96JM4 1722 aa23.23■■□□□ 1.31
CAPN3-207ENST00000397200 EPRSP07814 1512 aaKnown RBP23.2■■□□□ 1.3
CAPN3-207ENST00000397200 CCDC18Q5T9S5 1454 aa23.2■■□□□ 1.3
CAPN3-207ENST00000397200 ARID3CA6NKF2 412 aa23.19■■□□□ 1.3
CAPN3-207ENST00000397200 APLP2Q06481 763 aa23.19■■□□□ 1.3
CAPN3-207ENST00000397200 CDK13Q14004 1512 aaKnown RBP23.17■■□□□ 1.3
CAPN3-207ENST00000397200 CFAP43Q8NDM7 1665 aa23.16■■□□□ 1.3
CAPN3-207ENST00000397200 KDM5BQ9UGL1 1544 aa23.15■■□□□ 1.3
CAPN3-207ENST00000397200 ATP10BO94823 1461 aa23.15■■□□□ 1.3
CAPN3-207ENST00000397200 ZCCHC11Q5TAX3 1644 aaKnown RBP23.15■■□□□ 1.3
CAPN3-207ENST00000397200 TIAM1Q13009 1591 aa23.15■■□□□ 1.3
CAPN3-207ENST00000397200 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.14■■□□□ 1.29
CAPN3-207ENST00000397200 HNRNPUL2Q1KMD3 747 aaKnown RBP23.14■■□□□ 1.29
CAPN3-207ENST00000397200 MAP3K1Q13233 1512 aa23.13■■□□□ 1.29
CAPN3-207ENST00000397200 NPM1P06748 294 aaKnown RBP eCLIP23.11■■□□□ 1.29
CAPN3-207ENST00000397200 HRCP23327 699 aa23.11■■□□□ 1.29
CAPN3-207ENST00000397200 CDK11AQ9UQ88 783 aaPredicted RBP23.07■■□□□ 1.28
CAPN3-207ENST00000397200 LRRC9Q6ZRR7 1453 aa23.03■■□□□ 1.28
CAPN3-207ENST00000397200 MTUS2Q5JR59 1369 aa23.02■■□□□ 1.28
CAPN3-207ENST00000397200 PLEKHD1A6NEE1 506 aa23.01■■□□□ 1.27
CAPN3-207ENST00000397200 MAGI3Q5TCQ9 1506 aa23.01■■□□□ 1.27
CAPN3-207ENST00000397200 EHBP1L1Q8N3D4 1523 aa23.01■■□□□ 1.27
CAPN3-207ENST00000397200 KANK4Q5T7N3 995 aaPredicted RBP23■■□□□ 1.27
CAPN3-207ENST00000397200 TROQ12816 1431 aaPredicted RBP22.98■■□□□ 1.27
CAPN3-207ENST00000397200 ASXL2Q76L83 1435 aa22.98■■□□□ 1.27
CAPN3-207ENST00000397200 MAPKBP1O60336 1514 aa22.97■■□□□ 1.27
CAPN3-207ENST00000397200 PPARGC1BQ86YN6 1023 aaKnown RBP22.97■■□□□ 1.27
CAPN3-207ENST00000397200 WDR7Q9Y4E6 1490 aa22.96■■□□□ 1.27
CAPN3-207ENST00000397200 SUPT6HQ7KZ85 1726 aaKnown RBP22.93■■□□□ 1.26
CAPN3-207ENST00000397200 KIF14Q15058 1648 aa22.91■■□□□ 1.26
CAPN3-207ENST00000397200 KCNH8Q96L42 1107 aa22.89■■□□□ 1.25
CAPN3-207ENST00000397200 NCOA2Q15596 1464 aa22.86■■□□□ 1.25
CAPN3-207ENST00000397200 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP22.82■■□□□ 1.24
CAPN3-207ENST00000397200 TTC37Q6PGP7 1564 aa22.8■■□□□ 1.24
CAPN3-207ENST00000397200 ABCC10Q5T3U5 1492 aa22.8■■□□□ 1.24
CAPN3-207ENST00000397200 ABCA9Q8IUA7 1624 aa22.78■■□□□ 1.24
CAPN3-207ENST00000397200 DIP2BQ9P265 1576 aa22.78■■□□□ 1.24
CAPN3-207ENST00000397200 CCNB3Q8WWL7 1395 aa22.77■■□□□ 1.24
CAPN3-207ENST00000397200 GLI2P10070 1586 aa22.76■■□□□ 1.23
CAPN3-207ENST00000397200 PHLDB1Q86UU1 1377 aa22.76■■□□□ 1.23
CAPN3-207ENST00000397200 ITSN2Q9NZM3 1697 aa22.76■■□□□ 1.23
CAPN3-207ENST00000397200 CDC42BPAQ5VT25 1732 aa22.75■■□□□ 1.23
CAPN3-207ENST00000397200 MYO5CQ9NQX4 1742 aa22.75■■□□□ 1.23
CAPN3-207ENST00000397200 KIF13AQ9H1H9 1805 aa22.73■■□□□ 1.23
CAPN3-207ENST00000397200 MYOM3Q5VTT5 1437 aa22.73■■□□□ 1.23
CAPN3-207ENST00000397200 FAM69CQ0P6D2 419 aa22.72■■□□□ 1.23
CAPN3-207ENST00000397200 GPATCH8Q9UKJ3 1502 aaKnown RBP22.72■■□□□ 1.23
CAPN3-207ENST00000397200 PREX2Q70Z35 1606 aa22.71■■□□□ 1.23
CAPN3-207ENST00000397200 MAP3K4Q9Y6R4 1608 aa22.7■■□□□ 1.22
CAPN3-207ENST00000397200 CDC42BPBQ9Y5S2 1711 aa22.69■■□□□ 1.22
CAPN3-207ENST00000397200 CD109Q6YHK3 1445 aa22.68■■□□□ 1.22
CAPN3-207ENST00000397200 PLCH2O75038 1416 aa22.67■■□□□ 1.22
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms