RNA–Protein interactions for RNA: ENST00000396854.8

TM9SF1-202, Transcript of transmembrane 9 superfamily member 1, humanhuman

TSL 1 (best) BASIC

Gene TM9SF1, Length 2,055 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF1-202ENST00000396854 NUP160Q12769 1436 aa23.93■■□□□ 1.42
TM9SF1-202ENST00000396854 FBLN2P98095 1184 aa23.92■■□□□ 1.42
TM9SF1-202ENST00000396854 KIAA0586Q9BVV6 1533 aa23.85■■□□□ 1.41
TM9SF1-202ENST00000396854 IQGAP2Q13576 1575 aa23.85■■□□□ 1.41
TM9SF1-202ENST00000396854 CLASP1Q7Z460 1538 aa23.79■■□□□ 1.4
TM9SF1-202ENST00000396854 CEP162Q5TB80 1403 aa23.77■■□□□ 1.4
TM9SF1-202ENST00000396854 UGGT2Q9NYU1 1516 aa23.73■■□□□ 1.39
TM9SF1-202ENST00000396854 SHROOM2Q13796 1616 aa23.72■■□□□ 1.39
TM9SF1-202ENST00000396854 SAMD9Q5K651 1589 aa23.71■■□□□ 1.39
TM9SF1-202ENST00000396854 CLIP1P30622 1438 aa23.71■■□□□ 1.39
TM9SF1-202ENST00000396854 EFCAB5A4FU69 1503 aa23.7■■□□□ 1.39
TM9SF1-202ENST00000396854 OSCARQ8IYS5 282 aa23.68■■□□□ 1.38
TM9SF1-202ENST00000396854 ARHGAP35Q9NRY4 1499 aa23.66■■□□□ 1.38
TM9SF1-202ENST00000396854 JPH4Q96JJ6 628 aa23.62■■□□□ 1.37
TM9SF1-202ENST00000396854 KIAA0556O60303 1618 aa23.62■■□□□ 1.37
TM9SF1-202ENST00000396854 RANGAP1P46060 587 aaPredicted RBP23.61■■□□□ 1.37
TM9SF1-202ENST00000396854 DISP1Q96F81 1524 aa23.61■■□□□ 1.37
TM9SF1-202ENST00000396854 ARAP1Q96P48 1450 aa23.57■■□□□ 1.36
TM9SF1-202ENST00000396854 CARMIL2Q6F5E8 1435 aa23.54■■□□□ 1.36
TM9SF1-202ENST00000396854 PRG4Q92954 1404 aaPredicted RBP23.54■■□□□ 1.36
TM9SF1-202ENST00000396854 FHOD3Q2V2M9 1422 aa23.51■■□□□ 1.35
TM9SF1-202ENST00000396854 ERCC6L2Q5T890 1561 aa23.5■■□□□ 1.35
TM9SF1-202ENST00000396854 P3H3Q8IVL6 736 aa23.47■■□□□ 1.35
TM9SF1-202ENST00000396854 VPS8Q8N3P4 1428 aa23.45■■□□□ 1.35
TM9SF1-202ENST00000396854 FMN1Q68DA7 1419 aa23.43■■□□□ 1.34
TM9SF1-202ENST00000396854 PCF11O94913 1555 aaKnown RBP23.37■■□□□ 1.33
TM9SF1-202ENST00000396854 ARHGEF11O15085 1522 aa23.36■■□□□ 1.33
TM9SF1-202ENST00000396854 PTPRGP23470 1445 aa23.33■■□□□ 1.33
TM9SF1-202ENST00000396854 HRCP23327 699 aa23.33■■□□□ 1.33
TM9SF1-202ENST00000396854 FYCO1Q9BQS8 1478 aa23.33■■□□□ 1.32
TM9SF1-202ENST00000396854 CASKIN1Q8WXD9 1431 aa23.33■■□□□ 1.32
TM9SF1-202ENST00000396854 RAPGEF6Q8TEU7 1601 aa23.32■■□□□ 1.32
TM9SF1-202ENST00000396854 RIMBP3CA6NJZ7 1639 aa23.32■■□□□ 1.32
TM9SF1-202ENST00000396854 RIMBP3BA6NNM3 1639 aa23.32■■□□□ 1.32
TM9SF1-202ENST00000396854 RIMBP3Q9UFD9 1639 aa23.32■■□□□ 1.32
TM9SF1-202ENST00000396854 ABCA8O94911 1581 aa23.31■■□□□ 1.32
TM9SF1-202ENST00000396854 HECW1Q76N89 1606 aa23.29■■□□□ 1.32
TM9SF1-202ENST00000396854 PLB1Q6P1J6 1458 aa23.27■■□□□ 1.32
TM9SF1-202ENST00000396854 LRRIQ1Q96JM4 1722 aa23.27■■□□□ 1.32
TM9SF1-202ENST00000396854 TTBK1Q5TCY1 1321 aaPredicted RBP23.25■■□□□ 1.31
TM9SF1-202ENST00000396854 UACAQ9BZF9 1416 aa23.23■■□□□ 1.31
TM9SF1-202ENST00000396854 CFAP43Q8NDM7 1665 aa23.22■■□□□ 1.31
TM9SF1-202ENST00000396854 NUP153P49790 1475 aaKnown RBP23.22■■□□□ 1.31
TM9SF1-202ENST00000396854 ABCC2Q92887 1545 aa23.22■■□□□ 1.31
TM9SF1-202ENST00000396854 PCGF6Q9BYE7 350 aa23.2■■□□□ 1.3
TM9SF1-202ENST00000396854 UHRF1BP1LA0JNW5 1464 aa23.2■■□□□ 1.3
TM9SF1-202ENST00000396854 MAP3K1Q13233 1512 aa23.2■■□□□ 1.3
TM9SF1-202ENST00000396854 CCDC18Q5T9S5 1454 aa23.18■■□□□ 1.3
TM9SF1-202ENST00000396854 TIAM1Q13009 1591 aa23.17■■□□□ 1.3
TM9SF1-202ENST00000396854 EPRSP07814 1512 aaKnown RBP23.17■■□□□ 1.3
TM9SF1-202ENST00000396854 ADCY10Q96PN6 1610 aa23.17■■□□□ 1.3
TM9SF1-202ENST00000396854 ATP1B4Q9UN42 357 aaPredicted RBP23.12■■□□□ 1.29
TM9SF1-202ENST00000396854 CDK13Q14004 1512 aaKnown RBP23.11■■□□□ 1.29
TM9SF1-202ENST00000396854 APLP2Q06481 763 aa23.1■■□□□ 1.29
TM9SF1-202ENST00000396854 KDM5BQ9UGL1 1544 aa23.09■■□□□ 1.29
TM9SF1-202ENST00000396854 ATP10BO94823 1461 aa23.08■■□□□ 1.29
TM9SF1-202ENST00000396854 ZCCHC11Q5TAX3 1644 aaKnown RBP23.08■■□□□ 1.29
TM9SF1-202ENST00000396854 LRRC9Q6ZRR7 1453 aa23.04■■□□□ 1.28
TM9SF1-202ENST00000396854 DNAJC5Q9H3Z4 198 aa23.02■■□□□ 1.28
TM9SF1-202ENST00000396854 CYB5RLQ6IPT4 315 aa23.02■■□□□ 1.28
TM9SF1-202ENST00000396854 MAGI3Q5TCQ9 1506 aa23.02■■□□□ 1.27
TM9SF1-202ENST00000396854 ARID3CA6NKF2 412 aa23.01■■□□□ 1.27
TM9SF1-202ENST00000396854 EHBP1L1Q8N3D4 1523 aa23■■□□□ 1.27
TM9SF1-202ENST00000396854 KANK4Q5T7N3 995 aaPredicted RBP22.98■■□□□ 1.27
TM9SF1-202ENST00000396854 MTUS2Q5JR59 1369 aa22.95■■□□□ 1.26
TM9SF1-202ENST00000396854 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.95■■□□□ 1.26
TM9SF1-202ENST00000396854 HNRNPUL2Q1KMD3 747 aaKnown RBP22.95■■□□□ 1.26
TM9SF1-202ENST00000396854 CDK11AQ9UQ88 783 aaPredicted RBP22.95■■□□□ 1.26
TM9SF1-202ENST00000396854 TROQ12816 1431 aaPredicted RBP22.94■■□□□ 1.26
TM9SF1-202ENST00000396854 SUPT6HQ7KZ85 1726 aaKnown RBP22.93■■□□□ 1.26
TM9SF1-202ENST00000396854 TRIM26Q12899 539 aaPredicted RBP22.91■■□□□ 1.26
TM9SF1-202ENST00000396854 PPARGC1BQ86YN6 1023 aaKnown RBP22.9■■□□□ 1.26
TM9SF1-202ENST00000396854 PLEKHD1A6NEE1 506 aa22.89■■□□□ 1.25
TM9SF1-202ENST00000396854 NPM1P06748 294 aaKnown RBP eCLIP22.89■■□□□ 1.25
TM9SF1-202ENST00000396854 MAPKBP1O60336 1514 aa22.89■■□□□ 1.25
TM9SF1-202ENST00000396854 KIF14Q15058 1648 aa22.87■■□□□ 1.25
TM9SF1-202ENST00000396854 WDR7Q9Y4E6 1490 aa22.86■■□□□ 1.25
TM9SF1-202ENST00000396854 ASXL2Q76L83 1435 aa22.85■■□□□ 1.25
TM9SF1-202ENST00000396854 NCOA2Q15596 1464 aa22.84■■□□□ 1.25
TM9SF1-202ENST00000396854 ABCC10Q5T3U5 1492 aa22.79■■□□□ 1.24
TM9SF1-202ENST00000396854 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP22.77■■□□□ 1.24
TM9SF1-202ENST00000396854 ITSN2Q9NZM3 1697 aa22.76■■□□□ 1.23
TM9SF1-202ENST00000396854 CDC42BPAQ5VT25 1732 aa22.75■■□□□ 1.23
TM9SF1-202ENST00000396854 TTC37Q6PGP7 1564 aa22.75■■□□□ 1.23
TM9SF1-202ENST00000396854 PHLDB1Q86UU1 1377 aa22.75■■□□□ 1.23
TM9SF1-202ENST00000396854 ABCA9Q8IUA7 1624 aa22.74■■□□□ 1.23
TM9SF1-202ENST00000396854 MYO5CQ9NQX4 1742 aa22.72■■□□□ 1.23
TM9SF1-202ENST00000396854 MYOM3Q5VTT5 1437 aa22.72■■□□□ 1.23
TM9SF1-202ENST00000396854 PREX2Q70Z35 1606 aa22.7■■□□□ 1.22
TM9SF1-202ENST00000396854 KCNH8Q96L42 1107 aa22.69■■□□□ 1.22
TM9SF1-202ENST00000396854 GPATCH8Q9UKJ3 1502 aaKnown RBP22.69■■□□□ 1.22
TM9SF1-202ENST00000396854 CCNB3Q8WWL7 1395 aa22.69■■□□□ 1.22
TM9SF1-202ENST00000396854 GLI2P10070 1586 aa22.69■■□□□ 1.22
TM9SF1-202ENST00000396854 DIP2BQ9P265 1576 aa22.69■■□□□ 1.22
TM9SF1-202ENST00000396854 CDC42BPBQ9Y5S2 1711 aa22.68■■□□□ 1.22
TM9SF1-202ENST00000396854 RRBP1Q9P2E9 1410 aaKnown RBP22.68■■□□□ 1.22
TM9SF1-202ENST00000396854 FGD6Q6ZV73 1430 aa22.66■■□□□ 1.22
TM9SF1-202ENST00000396854 MIA2Q96PC5 1412 aa22.65■■□□□ 1.22
TM9SF1-202ENST00000396854 ARAP3Q8WWN8 1544 aa22.64■■□□□ 1.21
TM9SF1-202ENST00000396854 KIF13AQ9H1H9 1805 aa22.64■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms