RNA–Protein interactions for RNA: ENST00000395802.7

VAPB-202, Transcript of VAMP associated protein B and C, humanhuman

TSL 1 (best) BASIC

Gene VAPB, Length 1,834 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAPB-202ENST00000395802 CLIP1P30622 1438 aa21.77■■□□□ 1.07
VAPB-202ENST00000395802 KIAA0586Q9BVV6 1533 aa21.73■■□□□ 1.07
VAPB-202ENST00000395802 NUP160Q12769 1436 aa21.72■■□□□ 1.07
VAPB-202ENST00000395802 IQGAP2Q13576 1575 aa21.69■■□□□ 1.06
VAPB-202ENST00000395802 RANGAP1P46060 587 aaPredicted RBP21.69■■□□□ 1.06
VAPB-202ENST00000395802 CHD1O14646 1710 aa21.68■■□□□ 1.06
VAPB-202ENST00000395802 EFCAB5A4FU69 1503 aa21.66■■□□□ 1.06
VAPB-202ENST00000395802 CEP170Q5SW79 1584 aa21.66■■□□□ 1.06
VAPB-202ENST00000395802 ARHGAP35Q9NRY4 1499 aa21.6■■□□□ 1.05
VAPB-202ENST00000395802 UGGT2Q9NYU1 1516 aa21.59■■□□□ 1.05
VAPB-202ENST00000395802 JPH4Q96JJ6 628 aa21.56■■□□□ 1.04
VAPB-202ENST00000395802 SAMD9Q5K651 1589 aa21.55■■□□□ 1.04
VAPB-202ENST00000395802 VPS8Q8N3P4 1428 aa21.53■■□□□ 1.04
VAPB-202ENST00000395802 CARMIL2Q6F5E8 1435 aa21.53■■□□□ 1.04
VAPB-202ENST00000395802 OSCARQ8IYS5 282 aa21.52■■□□□ 1.04
VAPB-202ENST00000395802 ARAP1Q96P48 1450 aa21.52■■□□□ 1.04
VAPB-202ENST00000395802 FMN1Q68DA7 1419 aa21.49■■□□□ 1.03
VAPB-202ENST00000395802 P3H3Q8IVL6 736 aa21.48■■□□□ 1.03
VAPB-202ENST00000395802 CLASP1Q7Z460 1538 aa21.47■■□□□ 1.03
VAPB-202ENST00000395802 FHOD3Q2V2M9 1422 aa21.47■■□□□ 1.03
VAPB-202ENST00000395802 KIAA0556O60303 1618 aa21.45■■□□□ 1.03
VAPB-202ENST00000395802 DISP1Q96F81 1524 aa21.45■■□□□ 1.02
VAPB-202ENST00000395802 APLP2Q06481 763 aa21.43■■□□□ 1.02
VAPB-202ENST00000395802 SHROOM2Q13796 1616 aa21.43■■□□□ 1.02
VAPB-202ENST00000395802 PRG4Q92954 1404 aaPredicted RBP21.42■■□□□ 1.02
VAPB-202ENST00000395802 CASKIN1Q8WXD9 1431 aa21.35■■□□□ 1.01
VAPB-202ENST00000395802 FYCO1Q9BQS8 1478 aa21.34■■□□□ 1.01
VAPB-202ENST00000395802 PTPRGP23470 1445 aa21.29■■□□□ 1
VAPB-202ENST00000395802 PCF11O94913 1555 aaKnown RBP21.28■■□□□ 1
VAPB-202ENST00000395802 ATP1B4Q9UN42 357 aaPredicted RBP21.28■■□□□ 1
VAPB-202ENST00000395802 MAP3K1Q13233 1512 aa21.27■■□□□ 1
VAPB-202ENST00000395802 TTBK1Q5TCY1 1321 aaPredicted RBP21.25■□□□□ 0.99
VAPB-202ENST00000395802 HECW1Q76N89 1606 aa21.25■□□□□ 0.99
VAPB-202ENST00000395802 CCDC18Q5T9S5 1454 aa21.22■□□□□ 0.99
VAPB-202ENST00000395802 RAPGEF6Q8TEU7 1601 aa21.21■□□□□ 0.99
VAPB-202ENST00000395802 ERCC6L2Q5T890 1561 aa21.19■□□□□ 0.98
VAPB-202ENST00000395802 TIAM1Q13009 1591 aa21.18■□□□□ 0.98
VAPB-202ENST00000395802 PLB1Q6P1J6 1458 aa21.17■□□□□ 0.98
VAPB-202ENST00000395802 UACAQ9BZF9 1416 aa21.17■□□□□ 0.98
VAPB-202ENST00000395802 ABCA8O94911 1581 aa21.16■□□□□ 0.98
VAPB-202ENST00000395802 CDK11AQ9UQ88 783 aaPredicted RBP21.15■□□□□ 0.98
VAPB-202ENST00000395802 EPRSP07814 1512 aaKnown RBP21.14■□□□□ 0.98
VAPB-202ENST00000395802 CFAP43Q8NDM7 1665 aa21.14■□□□□ 0.97
VAPB-202ENST00000395802 NUP153P49790 1475 aaKnown RBP21.13■□□□□ 0.97
VAPB-202ENST00000395802 LRRC9Q6ZRR7 1453 aa21.1■□□□□ 0.97
VAPB-202ENST00000395802 PPARGC1BQ86YN6 1023 aaKnown RBP21.1■□□□□ 0.97
VAPB-202ENST00000395802 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.09■□□□□ 0.97
VAPB-202ENST00000395802 HNRNPUL2Q1KMD3 747 aaKnown RBP21.09■□□□□ 0.97
VAPB-202ENST00000395802 UHRF1BP1LA0JNW5 1464 aa21.09■□□□□ 0.97
VAPB-202ENST00000395802 ABCC2Q92887 1545 aa21.09■□□□□ 0.97
VAPB-202ENST00000395802 ARHGEF11O15085 1522 aa21.08■□□□□ 0.97
VAPB-202ENST00000395802 MTUS2Q5JR59 1369 aa21.08■□□□□ 0.97
VAPB-202ENST00000395802 KANK4Q5T7N3 995 aaPredicted RBP21.07■□□□□ 0.96
VAPB-202ENST00000395802 LRRIQ1Q96JM4 1722 aa21.05■□□□□ 0.96
VAPB-202ENST00000395802 TRIM26Q12899 539 aaPredicted RBP21.04■□□□□ 0.96
VAPB-202ENST00000395802 CDK13Q14004 1512 aaKnown RBP21.03■□□□□ 0.96
VAPB-202ENST00000395802 EHBP1L1Q8N3D4 1523 aa21.03■□□□□ 0.96
VAPB-202ENST00000395802 ATP10BO94823 1461 aa21.02■□□□□ 0.95
VAPB-202ENST00000395802 ARID3CA6NKF2 412 aa21.01■□□□□ 0.95
VAPB-202ENST00000395802 PLEKHD1A6NEE1 506 aa21.01■□□□□ 0.95
VAPB-202ENST00000395802 KDM5BQ9UGL1 1544 aa20.97■□□□□ 0.95
VAPB-202ENST00000395802 RIMBP3CA6NJZ7 1639 aa20.97■□□□□ 0.95
VAPB-202ENST00000395802 RIMBP3BA6NNM3 1639 aa20.97■□□□□ 0.95
VAPB-202ENST00000395802 RIMBP3Q9UFD9 1639 aa20.97■□□□□ 0.95
VAPB-202ENST00000395802 NPM1P06748 294 aaKnown RBP eCLIP20.96■□□□□ 0.95
VAPB-202ENST00000395802 SUPT6HQ7KZ85 1726 aaKnown RBP20.95■□□□□ 0.94
VAPB-202ENST00000395802 TROQ12816 1431 aaPredicted RBP20.95■□□□□ 0.94
VAPB-202ENST00000395802 PCGF6Q9BYE7 350 aa20.94■□□□□ 0.94
VAPB-202ENST00000395802 ADCY10Q96PN6 1610 aa20.93■□□□□ 0.94
VAPB-202ENST00000395802 MAGI3Q5TCQ9 1506 aa20.91■□□□□ 0.94
VAPB-202ENST00000395802 CYB5RLQ6IPT4 315 aa20.9■□□□□ 0.94
VAPB-202ENST00000395802 ZCCHC11Q5TAX3 1644 aaKnown RBP20.9■□□□□ 0.94
VAPB-202ENST00000395802 NCOA2Q15596 1464 aa20.9■□□□□ 0.94
VAPB-202ENST00000395802 KIF14Q15058 1648 aa20.85■□□□□ 0.93
VAPB-202ENST00000395802 PHLDB1Q86UU1 1377 aa20.84■□□□□ 0.93
VAPB-202ENST00000395802 RRBP1Q9P2E9 1410 aaKnown RBP20.83■□□□□ 0.93
VAPB-202ENST00000395802 MYOM3Q5VTT5 1437 aa20.82■□□□□ 0.92
VAPB-202ENST00000395802 CCNB3Q8WWL7 1395 aa20.81■□□□□ 0.92
VAPB-202ENST00000395802 WDR7Q9Y4E6 1490 aa20.79■□□□□ 0.92
VAPB-202ENST00000395802 MIA2Q96PC5 1412 aa20.78■□□□□ 0.92
VAPB-202ENST00000395802 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP20.77■□□□□ 0.923e-7■■■■□ 22
VAPB-202ENST00000395802 FGD6Q6ZV73 1430 aa20.77■□□□□ 0.91
VAPB-202ENST00000395802 ASXL2Q76L83 1435 aa20.77■□□□□ 0.91
VAPB-202ENST00000395802 KCNH8Q96L42 1107 aa20.75■□□□□ 0.91
VAPB-202ENST00000395802 ITSN2Q9NZM3 1697 aa20.74■□□□□ 0.91
VAPB-202ENST00000395802 ABCC10Q5T3U5 1492 aa20.73■□□□□ 0.91
VAPB-202ENST00000395802 MAPKBP1O60336 1514 aa20.72■□□□□ 0.91
VAPB-202ENST00000395802 CFDP1Q9UEE9 299 aaPredicted RBP20.71■□□□□ 0.91
VAPB-202ENST00000395802 GPATCH8Q9UKJ3 1502 aaKnown RBP20.71■□□□□ 0.91
VAPB-202ENST00000395802 FAM50AQ14320 339 aaKnown RBP20.7■□□□□ 0.9
VAPB-202ENST00000395802 DNAJC5Q9H3Z4 198 aa20.69■□□□□ 0.9
VAPB-202ENST00000395802 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP20.69■□□□□ 0.9
VAPB-202ENST00000395802 PTPN23Q9H3S7 1636 aa20.67■□□□□ 0.9
VAPB-202ENST00000395802 TCOF1Q13428 1488 aaKnown RBP20.66■□□□□ 0.9
VAPB-202ENST00000395802 CDC42BPAQ5VT25 1732 aa20.63■□□□□ 0.89
VAPB-202ENST00000395802 TTC37Q6PGP7 1564 aa20.63■□□□□ 0.89
VAPB-202ENST00000395802 MYO5CQ9NQX4 1742 aa20.63■□□□□ 0.89
VAPB-202ENST00000395802 PLCH2O75038 1416 aa20.63■□□□□ 0.89
VAPB-202ENST00000395802 PREX2Q70Z35 1606 aa20.62■□□□□ 0.89
VAPB-202ENST00000395802 ABCA9Q8IUA7 1624 aa20.62■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms