RNA–Protein interactions for RNA: ENST00000394601.8

PTBP1-204, Transcript of polypyrimidine tract binding protein 1, humanhuman

TSL 1 (best) BASIC

Gene PTBP1, Length 3,185 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTBP1-204ENST00000394601 WDR97A6NE52 1622 aa23.08■■□□□ 1.28
PTBP1-204ENST00000394601 CFAP43Q8NDM7 1665 aa23.01■■□□□ 1.27
PTBP1-204ENST00000394601 LAMC3Q9Y6N6 1575 aa23■■□□□ 1.27
PTBP1-204ENST00000394601 CCNB3Q8WWL7 1395 aa23■■□□□ 1.27
PTBP1-204ENST00000394601 URB2Q14146 1524 aaKnown RBP22.99■■□□□ 1.27
PTBP1-204ENST00000394601 CLSPNQ9HAW4 1339 aa22.99■■□□□ 1.27
PTBP1-204ENST00000394601 CUL7Q14999 1698 aa22.98■■□□□ 1.27
PTBP1-204ENST00000394601 PCF11O94913 1555 aaKnown RBP22.97■■□□□ 1.27
PTBP1-204ENST00000394601 LRRC9Q6ZRR7 1453 aa22.97■■□□□ 1.27
PTBP1-204ENST00000394601 CTTNBP2Q8WZ74 1663 aa22.95■■□□□ 1.26
PTBP1-204ENST00000394601 ABCA5Q8WWZ7 1642 aa22.93■■□□□ 1.26
PTBP1-204ENST00000394601 EFCAB5A4FU69 1503 aa22.88■■□□□ 1.25
PTBP1-204ENST00000394601 PHLDB1Q86UU1 1377 aa22.88■■□□□ 1.25
PTBP1-204ENST00000394601 FHAD1B1AJZ9 1412 aa22.87■■□□□ 1.25
PTBP1-204ENST00000394601 DNAJC5BQ9UF47 199 aa22.87■■□□□ 1.25
PTBP1-204ENST00000394601 AQRO60306 1485 aaKnown RBP eCLIP22.84■■□□□ 1.253e-8■■■■■ 33.8
PTBP1-204ENST00000394601 FHOD3Q2V2M9 1422 aa22.84■■□□□ 1.25
PTBP1-204ENST00000394601 KIF21AQ7Z4S6 1674 aa22.83■■□□□ 1.25
PTBP1-204ENST00000394601 FYCO1Q9BQS8 1478 aa22.83■■□□□ 1.24
PTBP1-204ENST00000394601 MAPKBP1O60336 1514 aa22.82■■□□□ 1.24
PTBP1-204ENST00000394601 CASKIN1Q8WXD9 1431 aa22.81■■□□□ 1.24
PTBP1-204ENST00000394601 LRRIQ1Q96JM4 1722 aa22.8■■□□□ 1.24
PTBP1-204ENST00000394601 SAMD9Q5K651 1589 aa22.8■■□□□ 1.24
PTBP1-204ENST00000394601 SNAPC4Q5SXM2 1469 aa22.79■■□□□ 1.24
PTBP1-204ENST00000394601 MIER1Q8N108 512 aa22.79■■□□□ 1.24
PTBP1-204ENST00000394601 TARBP1Q13395 1621 aaKnown RBP22.78■■□□□ 1.24
PTBP1-204ENST00000394601 RAB3GAP2Q9H2M9 1393 aa22.77■■□□□ 1.24
PTBP1-204ENST00000394601 P3H3Q8IVL6 736 aa22.75■■□□□ 1.23
PTBP1-204ENST00000394601 BCL11AQ9H165 835 aa22.74■■□□□ 1.23
PTBP1-204ENST00000394601 GAPVD1Q14C86 1478 aa22.72■■□□□ 1.23
PTBP1-204ENST00000394601 TDRD9Q8NDG6 1382 aaKnown RBP22.72■■□□□ 1.23
PTBP1-204ENST00000394601 PDS5BQ9NTI5 1447 aa22.72■■□□□ 1.23
PTBP1-204ENST00000394601 SETD5Q9C0A6 1442 aa22.68■■□□□ 1.22
PTBP1-204ENST00000394601 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP22.66■■□□□ 1.223e-7■■■□□ 16.4
PTBP1-204ENST00000394601 ITGAEP38570 1179 aa22.66■■□□□ 1.22
PTBP1-204ENST00000394601 FMN1Q68DA7 1419 aa22.64■■□□□ 1.22
PTBP1-204ENST00000394601 GRIN2BQ13224 1484 aa22.64■■□□□ 1.21
PTBP1-204ENST00000394601 BCANQ96GW7 911 aa22.63■■□□□ 1.21
PTBP1-204ENST00000394601 PBRM1Q86U86 1689 aa22.62■■□□□ 1.21
PTBP1-204ENST00000394601 THOC2Q8NI27 1593 aaKnown RBP22.58■■□□□ 1.21
PTBP1-204ENST00000394601 FGD6Q6ZV73 1430 aa22.55■■□□□ 1.2
PTBP1-204ENST00000394601 ARHGEF11O15085 1522 aa22.53■■□□□ 1.2
PTBP1-204ENST00000394601 PTPRKQ15262 1439 aa22.53■■□□□ 1.2
PTBP1-204ENST00000394601 MAGI3Q5TCQ9 1506 aa22.53■■□□□ 1.2
PTBP1-204ENST00000394601 FAM50AQ14320 339 aaKnown RBP22.52■■□□□ 1.2
PTBP1-204ENST00000394601 ADAMTS12P58397 1594 aa22.52■■□□□ 1.19
PTBP1-204ENST00000394601 ATP1B4Q9UN42 357 aaPredicted RBP22.48■■□□□ 1.19
PTBP1-204ENST00000394601 NCOA2Q15596 1464 aa22.47■■□□□ 1.19
PTBP1-204ENST00000394601 SUPT6HQ7KZ85 1726 aaKnown RBP22.45■■□□□ 1.19
PTBP1-204ENST00000394601 UGGT2Q9NYU1 1516 aa22.45■■□□□ 1.18
PTBP1-204ENST00000394601 MRC2Q9UBG0 1479 aa22.45■■□□□ 1.18
PTBP1-204ENST00000394601 EHBP1L1Q8N3D4 1523 aa22.44■■□□□ 1.18
PTBP1-204ENST00000394601 ANP32EQ9BTT0 268 aa22.44■■□□□ 1.18
PTBP1-204ENST00000394601 IQGAP2Q13576 1575 aa22.43■■□□□ 1.18
PTBP1-204ENST00000394601 PTPN23Q9H3S7 1636 aa22.42■■□□□ 1.18
PTBP1-204ENST00000394601 MYOM3Q5VTT5 1437 aa22.42■■□□□ 1.18
PTBP1-204ENST00000394601 SIN3AQ96ST3 1273 aa22.42■■□□□ 1.18
PTBP1-204ENST00000394601 HFM1A2PYH4 1435 aa22.42■■□□□ 1.18
PTBP1-204ENST00000394601 MTUS2Q5JR59 1369 aa22.4■■□□□ 1.18
PTBP1-204ENST00000394601 WDR62O43379 1518 aa22.38■■□□□ 1.17
PTBP1-204ENST00000394601 SUPT16HQ9Y5B9 1047 aaKnown RBP22.37■■□□□ 1.17
PTBP1-204ENST00000394601 CCDC18Q5T9S5 1454 aa22.36■■□□□ 1.17
PTBP1-204ENST00000394601 HECW1Q76N89 1606 aa22.36■■□□□ 1.17
PTBP1-204ENST00000394601 NAIPQ13075 1403 aa22.36■■□□□ 1.17
PTBP1-204ENST00000394601 ZNF608Q9ULD9 1512 aaPredicted RBP22.35■■□□□ 1.17
PTBP1-204ENST00000394601 TCOF1Q13428 1488 aaKnown RBP22.35■■□□□ 1.17
PTBP1-204ENST00000394601 EPRSP07814 1512 aaKnown RBP22.33■■□□□ 1.16
PTBP1-204ENST00000394601 TSHZ2Q9NRE2 1034 aa22.32■■□□□ 1.16
PTBP1-204ENST00000394601 TIMELESSQ9UNS1 1208 aa22.32■■□□□ 1.16
PTBP1-204ENST00000394601 UACAQ9BZF9 1416 aa22.31■■□□□ 1.16
PTBP1-204ENST00000394601 KDM5BQ9UGL1 1544 aa22.3■■□□□ 1.16
PTBP1-204ENST00000394601 IFT140Q96RY7 1462 aa22.3■■□□□ 1.16
PTBP1-204ENST00000394601 GCC2Q8IWJ2 1684 aa22.28■■□□□ 1.16
PTBP1-204ENST00000394601 DENND4BO75064 1496 aaPredicted RBP22.28■■□□□ 1.16
PTBP1-204ENST00000394601 CDK13Q14004 1512 aaKnown RBP22.28■■□□□ 1.16
PTBP1-204ENST00000394601 DISP1Q96F81 1524 aa22.27■■□□□ 1.16
PTBP1-204ENST00000394601 PPP1R15AO75807 674 aaPredicted RBP22.26■■□□□ 1.15
PTBP1-204ENST00000394601 KDM6BO15054 1643 aa22.24■■□□□ 1.15
PTBP1-204ENST00000394601 KIAA0556O60303 1618 aa22.24■■□□□ 1.15
PTBP1-204ENST00000394601 EIF4G3O43432 1585 aaKnown RBP22.23■■□□□ 1.15
PTBP1-204ENST00000394601 KIAA0586Q9BVV6 1533 aa22.2■■□□□ 1.14
PTBP1-204ENST00000394601 AKNAQ7Z591 1439 aa22.19■■□□□ 1.14
PTBP1-204ENST00000394601 MIA2Q96PC5 1412 aa22.17■■□□□ 1.14
PTBP1-204ENST00000394601 GRIN2AQ12879 1464 aa22.16■■□□□ 1.14
PTBP1-204ENST00000394601 KCNH8Q96L42 1107 aa22.16■■□□□ 1.14
PTBP1-204ENST00000394601 NUP153P49790 1475 aaKnown RBP22.15■■□□□ 1.14
PTBP1-204ENST00000394601 RAPGEF6Q8TEU7 1601 aa22.12■■□□□ 1.13
PTBP1-204ENST00000394601 CEP170Q5SW79 1584 aa22.11■■□□□ 1.13
PTBP1-204ENST00000394601 FKBP8Q14318 412 aa22.07■■□□□ 1.12
PTBP1-204ENST00000394601 DNMT1P26358 1616 aaKnown RBP22.07■■□□□ 1.12
PTBP1-204ENST00000394601 DDX10Q13206 875 aaKnown RBP22.06■■□□□ 1.12
PTBP1-204ENST00000394601 MAGI1Q96QZ7 1491 aaPredicted RBP22.05■■□□□ 1.12
PTBP1-204ENST00000394601 RRP7BPQ9NSQ0 103 aa22.05■■□□□ 1.12
PTBP1-204ENST00000394601 TONSLQ96HA7 1378 aa22.04■■□□□ 1.12
PTBP1-204ENST00000394601 HIRIP3Q9BW71 556 aaPredicted RBP22.04■■□□□ 1.12
PTBP1-204ENST00000394601 DAPK1P53355 1430 aa22.02■■□□□ 1.12
PTBP1-204ENST00000394601 CHIC2Q9UKJ5 165 aa22.01■■□□□ 1.11
PTBP1-204ENST00000394601 ABCC5O15440 1437 aa22.01■■□□□ 1.11
PTBP1-204ENST00000394601 SYNJ2O15056 1496 aa22■■□□□ 1.11
PTBP1-204ENST00000394601 ROCK1Q13464 1354 aa22■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms