RNA–Protein interactions for RNA: ENST00000394536.4

PCDH1-203, Transcript of protocadherin 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PCDH1, Length 3,827 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1-203ENST00000394536 MTUS2Q5JR59 1369 aa22.42■■□□□ 1.18
PCDH1-203ENST00000394536 TSHZ2Q9NRE2 1034 aa22.41■■□□□ 1.18
PCDH1-203ENST00000394536 CARMIL1Q5VZK9 1371 aa22.41■■□□□ 1.18
PCDH1-203ENST00000394536 SETD5Q9C0A6 1442 aa22.36■■□□□ 1.17
PCDH1-203ENST00000394536 SENP3-EIF4A1A0A087X0R7 540 aa22.35■■□□□ 1.17
PCDH1-203ENST00000394536 ANP32EQ9BTT0 268 aa22.31■■□□□ 1.16
PCDH1-203ENST00000394536 ARAP1Q96P48 1450 aa22.28■■□□□ 1.16
PCDH1-203ENST00000394536 PPP1R15AO75807 674 aaPredicted RBP22.26■■□□□ 1.15
PCDH1-203ENST00000394536 ZNF777Q9ULD5 760 aaPredicted RBP22.26■■□□□ 1.15
PCDH1-203ENST00000394536 EIF4G1Q04637 1599 aaKnown RBP22.26■■□□□ 1.15
PCDH1-203ENST00000394536 MRS2Q9HD23 443 aa22.25■■□□□ 1.15
PCDH1-203ENST00000394536 EIF4G2P78344 907 aaKnown RBP eCLIP22.21■■□□□ 1.15
PCDH1-203ENST00000394536 FBLN2P98095 1184 aa22.2■■□□□ 1.14
PCDH1-203ENST00000394536 RBM19Q9Y4C8 960 aaKnown RBP22.19■■□□□ 1.14
PCDH1-203ENST00000394536 FHAD1B1AJZ9 1412 aa22.17■■□□□ 1.14
PCDH1-203ENST00000394536 FOXD1Q16676 465 aa22.15■■□□□ 1.14
PCDH1-203ENST00000394536 IGF1RP08069 1367 aa22.15■■□□□ 1.14
PCDH1-203ENST00000394536 FHOD3Q2V2M9 1422 aa22.15■■□□□ 1.14
PCDH1-203ENST00000394536 SALL2Q9Y467 1007 aaPredicted RBP22.13■■□□□ 1.13
PCDH1-203ENST00000394536 TIMELESSQ9UNS1 1208 aa22.13■■□□□ 1.13
PCDH1-203ENST00000394536 CCER2I3L3R5 266 aa22.12■■□□□ 1.13
PCDH1-203ENST00000394536 PHLDB1Q86UU1 1377 aa22.12■■□□□ 1.13
PCDH1-203ENST00000394536 PRXQ9BXM0 1461 aa22.12■■□□□ 1.13
PCDH1-203ENST00000394536 ARHGAP35Q9NRY4 1499 aa22.09■■□□□ 1.13
PCDH1-203ENST00000394536 SLC4A1APQ9BWU0 796 aaKnown RBP22.08■■□□□ 1.13
PCDH1-203ENST00000394536 RRBP1Q9P2E9 1410 aaKnown RBP22.08■■□□□ 1.12
PCDH1-203ENST00000394536 HSPA5P11021 654 aaKnown RBP22.07■■□□□ 1.12
PCDH1-203ENST00000394536 B4GALNT3Q6L9W6 998 aa22.04■■□□□ 1.12
PCDH1-203ENST00000394536 TDRD9Q8NDG6 1382 aaKnown RBP22.02■■□□□ 1.12
PCDH1-203ENST00000394536 BICRAQ9NZM4 1560 aa22.02■■□□□ 1.12
PCDH1-203ENST00000394536 KDM2AQ9Y2K7 1162 aa22.02■■□□□ 1.12
PCDH1-203ENST00000394536 CADPSQ9ULU8 1353 aa22.01■■□□□ 1.11
PCDH1-203ENST00000394536 TOP2BQ02880 1626 aa21.98■■□□□ 1.11
PCDH1-203ENST00000394536 NBR1Q14596 966 aa21.98■■□□□ 1.11
PCDH1-203ENST00000394536 NPM2Q86SE8 214 aaKnown RBP21.98■■□□□ 1.11
PCDH1-203ENST00000394536 RTL5Q5HYW3 569 aaPredicted RBP21.97■■□□□ 1.11
PCDH1-203ENST00000394536 CCDC136Q96JN2 1154 aa21.97■■□□□ 1.11
PCDH1-203ENST00000394536 TMC1Q8TDI8 760 aa21.97■■□□□ 1.11
PCDH1-203ENST00000394536 ERICH3Q5RHP9 1530 aa21.96■■□□□ 1.11
PCDH1-203ENST00000394536 CUX1P39880 1505 aa21.95■■□□□ 1.1
PCDH1-203ENST00000394536 LRRC9Q6ZRR7 1453 aa21.92■■□□□ 1.1
PCDH1-203ENST00000394536 L3MBTL2Q969R5 705 aa21.92■■□□□ 1.1
PCDH1-203ENST00000394536 PPP4R2Q9NY27 417 aa21.89■■□□□ 1.1
PCDH1-203ENST00000394536 MYT1LQ9UL68 1186 aa21.89■■□□□ 1.1
PCDH1-203ENST00000394536 MPHOSPH9Q99550 1183 aa21.89■■□□□ 1.09
PCDH1-203ENST00000394536 UNC13AQ9UPW8 1703 aa21.89■■□□□ 1.09
PCDH1-203ENST00000394536 FGD5Q6ZNL6 1462 aa21.88■■□□□ 1.09
PCDH1-203ENST00000394536 NCAPD3P42695 1498 aa21.88■■□□□ 1.09
PCDH1-203ENST00000394536 ANP32AP39687 249 aaKnown RBP21.88■■□□□ 1.09
PCDH1-203ENST00000394536 WDR97A6NE52 1622 aa21.86■■□□□ 1.09
PCDH1-203ENST00000394536 DAXXQ9UER7 740 aaPredicted RBP21.86■■□□□ 1.09
PCDH1-203ENST00000394536 RAD54L2Q9Y4B4 1467 aa21.86■■□□□ 1.09
PCDH1-203ENST00000394536 BCL11AQ9H165 835 aa21.85■■□□□ 1.09
PCDH1-203ENST00000394536 FMN1Q68DA7 1419 aa21.83■■□□□ 1.09
PCDH1-203ENST00000394536 CFTRP13569 1480 aa21.82■■□□□ 1.08
PCDH1-203ENST00000394536 CFDP1Q9UEE9 299 aaPredicted RBP21.8■■□□□ 1.08
PCDH1-203ENST00000394536 CCDC18Q5T9S5 1454 aa21.79■■□□□ 1.08
PCDH1-203ENST00000394536 GRWD1Q9BQ67 446 aaKnown RBP eCLIP21.78■■□□□ 1.08
PCDH1-203ENST00000394536 PEG3Q9GZU2 1588 aa21.77■■□□□ 1.08
PCDH1-203ENST00000394536 RGL3Q3MIN7 710 aa21.76■■□□□ 1.07
PCDH1-203ENST00000394536 FGD6Q6ZV73 1430 aa21.75■■□□□ 1.07
PCDH1-203ENST00000394536 FANCD2Q9BXW9 1451 aa21.75■■□□□ 1.07
PCDH1-203ENST00000394536 WASHC2AQ641Q2 1341 aa21.73■■□□□ 1.07
PCDH1-203ENST00000394536 CARD11Q9BXL7 1154 aa21.73■■□□□ 1.07
PCDH1-203ENST00000394536 TSPY4P0CV99 314 aa21.73■■□□□ 1.07
PCDH1-203ENST00000394536 TSPY10P0CW01 314 aa21.73■■□□□ 1.07
PCDH1-203ENST00000394536 CCDC184Q52MB2 194 aa21.72■■□□□ 1.07
PCDH1-203ENST00000394536 ZBTB47Q9UFB7 747 aaPredicted RBP21.72■■□□□ 1.07
PCDH1-203ENST00000394536 PRKRIP1Q9H875 184 aaPredicted RBP21.72■■□□□ 1.07
PCDH1-203ENST00000394536 TIAM1Q13009 1591 aa21.71■■□□□ 1.07
PCDH1-203ENST00000394536 CHMP7Q8WUX9 453 aaPredicted RBP21.7■■□□□ 1.06
PCDH1-203ENST00000394536 PKD2Q13563 968 aa21.66■■□□□ 1.06
PCDH1-203ENST00000394536 UACAQ9BZF9 1416 aa21.65■■□□□ 1.06
PCDH1-203ENST00000394536 MAPKBP1O60336 1514 aa21.63■■□□□ 1.05
PCDH1-203ENST00000394536 ZNF644Q9H582 1327 aaPredicted RBP21.63■■□□□ 1.05
PCDH1-203ENST00000394536 DCAF11Q8TEB1 546 aa21.61■■□□□ 1.05
PCDH1-203ENST00000394536 CASKIN1Q8WXD9 1431 aa21.61■■□□□ 1.05
PCDH1-203ENST00000394536 PLEKHD1A6NEE1 506 aa21.6■■□□□ 1.05
PCDH1-203ENST00000394536 NOP58Q9Y2X3 529 aaKnown RBP21.59■■□□□ 1.05
PCDH1-203ENST00000394536 MYOM3Q5VTT5 1437 aa21.57■■□□□ 1.04
PCDH1-203ENST00000394536 NCOA2Q15596 1464 aa21.56■■□□□ 1.04
PCDH1-203ENST00000394536 BIVM-ERCC5R4GMW8 1640 aa21.55■■□□□ 1.04
PCDH1-203ENST00000394536 C11orf95C9JLR9 678 aaPredicted RBP21.55■■□□□ 1.04
PCDH1-203ENST00000394536 NESP48681 1621 aa21.54■■□□□ 1.04
PCDH1-203ENST00000394536 NBPF8Q3BBV2 869 aa21.53■■□□□ 1.04
PCDH1-203ENST00000394536 CC2D1BQ5T0F9 858 aaKnown RBP21.53■■□□□ 1.04
PCDH1-203ENST00000394536 HMGXB3Q12766 1538 aa21.53■■□□□ 1.04
PCDH1-203ENST00000394536 ERICH6BQ5W0A0 696 aa21.53■■□□□ 1.04
PCDH1-203ENST00000394536 KIF7Q2M1P5 1343 aa21.52■■□□□ 1.03
PCDH1-203ENST00000394536 DEKP35659 375 aaKnown RBP21.51■■□□□ 1.03
PCDH1-203ENST00000394536 FYCO1Q9BQS8 1478 aa21.5■■□□□ 1.03
PCDH1-203ENST00000394536 CCDC7Q96M83 1385 aa21.5■■□□□ 1.03
PCDH1-203ENST00000394536 LAS1LQ9Y4W2 734 aaKnown RBP21.49■■□□□ 1.03
PCDH1-203ENST00000394536 PCF11O94913 1555 aaKnown RBP21.49■■□□□ 1.03
PCDH1-203ENST00000394536 HFM1A2PYH4 1435 aa21.49■■□□□ 1.03
PCDH1-203ENST00000394536 ZBED9Q6R2W3 1325 aa21.49■■□□□ 1.03
PCDH1-203ENST00000394536 MSH5O43196 834 aa21.49■■□□□ 1.03
PCDH1-203ENST00000394536 NAIPQ13075 1403 aa21.49■■□□□ 1.03
PCDH1-203ENST00000394536 NUDCQ9Y266 331 aa21.48■■□□□ 1.03
PCDH1-203ENST00000394536 GAPVD1Q14C86 1478 aa21.46■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 115.1 ms