RNA–Protein interactions for RNA: ENST00000393158.6

PDGFD-202, Transcript of platelet derived growth factor D, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene PDGFD, Length 3,801 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFD-202ENST00000393158 SYNJ2O15056 1496 aa17.66■□□□□ 0.42
PDGFD-202ENST00000393158 ARHGAP35Q9NRY4 1499 aa17.65■□□□□ 0.42
PDGFD-202ENST00000393158 LRRIQ1Q96JM4 1722 aa17.62■□□□□ 0.41
PDGFD-202ENST00000393158 NUP160Q12769 1436 aa17.61■□□□□ 0.41
PDGFD-202ENST00000393158 IQGAP2Q13576 1575 aa17.58■□□□□ 0.4
PDGFD-202ENST00000393158 SHROOM2Q13796 1616 aa17.57■□□□□ 0.4
PDGFD-202ENST00000393158 CLIP1P30622 1438 aa17.55■□□□□ 0.4
PDGFD-202ENST00000393158 UGGT2Q9NYU1 1516 aa17.54■□□□□ 0.4
PDGFD-202ENST00000393158 CLASP1Q7Z460 1538 aa17.53■□□□□ 0.4
PDGFD-202ENST00000393158 DISP1Q96F81 1524 aa17.52■□□□□ 0.4
PDGFD-202ENST00000393158 EFCAB5A4FU69 1503 aa17.51■□□□□ 0.39
PDGFD-202ENST00000393158 UBTFP17480 764 aaKnown RBP17.5■□□□□ 0.39
PDGFD-202ENST00000393158 KIAA0586Q9BVV6 1533 aa17.5■□□□□ 0.39
PDGFD-202ENST00000393158 KIAA0556O60303 1618 aa17.48■□□□□ 0.39
PDGFD-202ENST00000393158 VPS8Q8N3P4 1428 aa17.45■□□□□ 0.38
PDGFD-202ENST00000393158 PCF11O94913 1555 aaKnown RBP17.45■□□□□ 0.38
PDGFD-202ENST00000393158 ERCC6L2Q5T890 1561 aa17.42■□□□□ 0.38
PDGFD-202ENST00000393158 CFAP43Q8NDM7 1665 aa17.4■□□□□ 0.38
PDGFD-202ENST00000393158 FHOD3Q2V2M9 1422 aa17.39■□□□□ 0.37
PDGFD-202ENST00000393158 CHMP7Q8WUX9 453 aaPredicted RBP17.31■□□□□ 0.36
PDGFD-202ENST00000393158 TIAM1Q13009 1591 aa17.29■□□□□ 0.36
PDGFD-202ENST00000393158 MAP3K1Q13233 1512 aa17.28■□□□□ 0.36
PDGFD-202ENST00000393158 FYCO1Q9BQS8 1478 aa17.28■□□□□ 0.36
PDGFD-202ENST00000393158 MAGI3Q5TCQ9 1506 aa17.27■□□□□ 0.36
PDGFD-202ENST00000393158 CASKIN1Q8WXD9 1431 aa17.27■□□□□ 0.36
PDGFD-202ENST00000393158 RANGAP1P46060 587 aaPredicted RBP17.27■□□□□ 0.36
PDGFD-202ENST00000393158 ABCA8O94911 1581 aa17.26■□□□□ 0.35
PDGFD-202ENST00000393158 RAPGEF6Q8TEU7 1601 aa17.25■□□□□ 0.35
PDGFD-202ENST00000393158 NUP153P49790 1475 aaKnown RBP17.21■□□□□ 0.35
PDGFD-202ENST00000393158 FBLN2P98095 1184 aa17.21■□□□□ 0.35
PDGFD-202ENST00000393158 P3H3Q8IVL6 736 aa17.2■□□□□ 0.34
PDGFD-202ENST00000393158 JPH4Q96JJ6 628 aa17.2■□□□□ 0.34
PDGFD-202ENST00000393158 FMN1Q68DA7 1419 aa17.19■□□□□ 0.34
PDGFD-202ENST00000393158 PRG4Q92954 1404 aaPredicted RBP17.19■□□□□ 0.34
PDGFD-202ENST00000393158 HECW1Q76N89 1606 aa17.19■□□□□ 0.34
PDGFD-202ENST00000393158 PLB1Q6P1J6 1458 aa17.18■□□□□ 0.34
PDGFD-202ENST00000393158 KANK4Q5T7N3 995 aaPredicted RBP17.16■□□□□ 0.34
PDGFD-202ENST00000393158 ARHGEF11O15085 1522 aa17.16■□□□□ 0.34
PDGFD-202ENST00000393158 CDK13Q14004 1512 aaKnown RBP17.15■□□□□ 0.34
PDGFD-202ENST00000393158 EPRSP07814 1512 aaKnown RBP17.14■□□□□ 0.34
PDGFD-202ENST00000393158 LRRC9Q6ZRR7 1453 aa17.14■□□□□ 0.34
PDGFD-202ENST00000393158 ADCY10Q96PN6 1610 aa17.12■□□□□ 0.33
PDGFD-202ENST00000393158 PPARGC1BQ86YN6 1023 aaKnown RBP17.1■□□□□ 0.33
PDGFD-202ENST00000393158 CARMIL2Q6F5E8 1435 aa17.06■□□□□ 0.32
PDGFD-202ENST00000393158 CCDC18Q5T9S5 1454 aa17.05■□□□□ 0.32
PDGFD-202ENST00000393158 ABCC2Q92887 1545 aa17.05■□□□□ 0.32
PDGFD-202ENST00000393158 ZCCHC11Q5TAX3 1644 aaKnown RBP17.05■□□□□ 0.32
PDGFD-202ENST00000393158 KIF14Q15058 1648 aa17.04■□□□□ 0.32
PDGFD-202ENST00000393158 ATP10BO94823 1461 aa17.03■□□□□ 0.32
PDGFD-202ENST00000393158 UHRF1BP1LA0JNW5 1464 aa17.03■□□□□ 0.32
PDGFD-202ENST00000393158 RIMBP3CA6NJZ7 1639 aa17.02■□□□□ 0.32
PDGFD-202ENST00000393158 RIMBP3BA6NNM3 1639 aa17.02■□□□□ 0.32
PDGFD-202ENST00000393158 RIMBP3Q9UFD9 1639 aa17.02■□□□□ 0.32
PDGFD-202ENST00000393158 EHBP1L1Q8N3D4 1523 aa17.01■□□□□ 0.31
PDGFD-202ENST00000393158 SUPT6HQ7KZ85 1726 aaKnown RBP17.01■□□□□ 0.31
PDGFD-202ENST00000393158 PHLDB1Q86UU1 1377 aa16.99■□□□□ 0.31
PDGFD-202ENST00000393158 RRBP1Q9P2E9 1410 aaKnown RBP16.99■□□□□ 0.31
PDGFD-202ENST00000393158 KDM5BQ9UGL1 1544 aa16.98■□□□□ 0.31
PDGFD-202ENST00000393158 CDC42BPAQ5VT25 1732 aa16.98■□□□□ 0.31
PDGFD-202ENST00000393158 OSCARQ8IYS5 282 aa16.98■□□□□ 0.31
PDGFD-202ENST00000393158 PTPRGP23470 1445 aa16.97■□□□□ 0.31
PDGFD-202ENST00000393158 UACAQ9BZF9 1416 aa16.97■□□□□ 0.31
PDGFD-202ENST00000393158 NCOA2Q15596 1464 aa16.93■□□□□ 0.3
PDGFD-202ENST00000393158 CDC42BPBQ9Y5S2 1711 aa16.93■□□□□ 0.3
PDGFD-202ENST00000393158 ABCC10Q5T3U5 1492 aa16.93■□□□□ 0.3
PDGFD-202ENST00000393158 TRIM26Q12899 539 aaPredicted RBP16.91■□□□□ 0.3
PDGFD-202ENST00000393158 TTC37Q6PGP7 1564 aa16.9■□□□□ 0.3
PDGFD-202ENST00000393158 TROQ12816 1431 aaPredicted RBP16.86■□□□□ 0.29
PDGFD-202ENST00000393158 TTBK1Q5TCY1 1321 aaPredicted RBP16.86■□□□□ 0.29
PDGFD-202ENST00000393158 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP16.86■□□□□ 0.29
PDGFD-202ENST00000393158 PTPN23Q9H3S7 1636 aa16.85■□□□□ 0.29
PDGFD-202ENST00000393158 TCOF1Q13428 1488 aaKnown RBP16.85■□□□□ 0.29
PDGFD-202ENST00000393158 PREX2Q70Z35 1606 aa16.85■□□□□ 0.29
PDGFD-202ENST00000393158 PCGF6Q9BYE7 350 aa16.84■□□□□ 0.29
PDGFD-202ENST00000393158 ITSN2Q9NZM3 1697 aa16.83■□□□□ 0.28
PDGFD-202ENST00000393158 CROCC2H7BZ55 1655 aa16.82■□□□□ 0.28
PDGFD-202ENST00000393158 MYOM3Q5VTT5 1437 aa16.82■□□□□ 0.28
PDGFD-202ENST00000393158 FGD6Q6ZV73 1430 aa16.82■□□□□ 0.28
PDGFD-202ENST00000393158 GPATCH8Q9UKJ3 1502 aaKnown RBP16.8■□□□□ 0.28
PDGFD-202ENST00000393158 ARID3CA6NKF2 412 aa16.8■□□□□ 0.28
PDGFD-202ENST00000393158 PTPRKQ15262 1439 aa16.79■□□□□ 0.28
PDGFD-202ENST00000393158 MYO5CQ9NQX4 1742 aa16.79■□□□□ 0.28
PDGFD-202ENST00000393158 ABCA9Q8IUA7 1624 aa16.79■□□□□ 0.28
PDGFD-202ENST00000393158 MTUS2Q5JR59 1369 aa16.78■□□□□ 0.28
PDGFD-202ENST00000393158 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP16.77■□□□□ 0.28
PDGFD-202ENST00000393158 SAMD9LQ8IVG5 1584 aa16.77■□□□□ 0.27
PDGFD-202ENST00000393158 CCNB3Q8WWL7 1395 aa16.77■□□□□ 0.27
PDGFD-202ENST00000393158 MAPKBP1O60336 1514 aa16.75■□□□□ 0.27
PDGFD-202ENST00000393158 DNMT1P26358 1616 aaKnown RBP16.75■□□□□ 0.27
PDGFD-202ENST00000393158 ATP1B4Q9UN42 357 aaPredicted RBP16.74■□□□□ 0.27
PDGFD-202ENST00000393158 WDR7Q9Y4E6 1490 aa16.72■□□□□ 0.27
PDGFD-202ENST00000393158 MIA2Q96PC5 1412 aa16.72■□□□□ 0.27
PDGFD-202ENST00000393158 KIF13AQ9H1H9 1805 aa16.71■□□□□ 0.27
PDGFD-202ENST00000393158 PPRC1Q5VV67 1664 aaKnown RBP16.71■□□□□ 0.27
PDGFD-202ENST00000393158 APLP2Q06481 763 aa16.71■□□□□ 0.27
PDGFD-202ENST00000393158 MAP3K4Q9Y6R4 1608 aa16.7■□□□□ 0.26
PDGFD-202ENST00000393158 ASXL2Q76L83 1435 aa16.69■□□□□ 0.26
PDGFD-202ENST00000393158 GCC2Q8IWJ2 1684 aa16.69■□□□□ 0.26
PDGFD-202ENST00000393158 KDM6BO15054 1643 aa16.69■□□□□ 0.26
PDGFD-202ENST00000393158 CAMSAP2Q08AD1 1489 aa16.68■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 10.5 ms