RNA–Protein interactions for RNA: ENST00000392003.6

COL6A3-204, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2 BASIC

Gene COL6A3, Length 3,464 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-204ENST00000392003 CLSPNQ9HAW4 1339 aa14.16□□□□□ -0.14
COL6A3-204ENST00000392003 ABCA10Q8WWZ4 1543 aa14.16□□□□□ -0.14
COL6A3-204ENST00000392003 FHAD1B1AJZ9 1412 aa14.16□□□□□ -0.14
COL6A3-204ENST00000392003 RRBP1Q9P2E9 1410 aaKnown RBP14.16□□□□□ -0.14
COL6A3-204ENST00000392003 GTF3C3Q9Y5Q9 886 aa14.16□□□□□ -0.14
COL6A3-204ENST00000392003 CCNB3Q8WWL7 1395 aa14.15□□□□□ -0.14
COL6A3-204ENST00000392003 URB2Q14146 1524 aaKnown RBP14.15□□□□□ -0.14
COL6A3-204ENST00000392003 NEUROD1Q13562 356 aa14.14□□□□□ -0.15
COL6A3-204ENST00000392003 CENPBP07199 599 aaPredicted RBP14.13□□□□□ -0.15
COL6A3-204ENST00000392003 ITGAEP38570 1179 aa14.13□□□□□ -0.15
COL6A3-204ENST00000392003 MAP3K1Q13233 1512 aa14.11□□□□□ -0.15
COL6A3-204ENST00000392003 ERCC6Q03468 1493 aa14.1□□□□□ -0.15
COL6A3-204ENST00000392003 TIAM1Q13009 1591 aa14.1□□□□□ -0.15
COL6A3-204ENST00000392003 CUL7Q14999 1698 aa14.09□□□□□ -0.15
COL6A3-204ENST00000392003 ACIN1Q9UKV3 1341 aaKnown RBP14.09□□□□□ -0.15
COL6A3-204ENST00000392003 DHX57Q6P158 1386 aaKnown RBP14.09□□□□□ -0.15
COL6A3-204ENST00000392003 GAPVD1Q14C86 1478 aa14.08□□□□□ -0.15
COL6A3-204ENST00000392003 LRRC9Q6ZRR7 1453 aa14.06□□□□□ -0.16
COL6A3-204ENST00000392003 EFCAB5A4FU69 1503 aa14.05□□□□□ -0.16
COL6A3-204ENST00000392003 FHOD3Q2V2M9 1422 aa14.04□□□□□ -0.16
COL6A3-204ENST00000392003 FAM50AQ14320 339 aaKnown RBP14.04□□□□□ -0.16
COL6A3-204ENST00000392003 MRC2Q9UBG0 1479 aa14.04□□□□□ -0.16
COL6A3-204ENST00000392003 FBLN2P98095 1184 aa14.03□□□□□ -0.16
COL6A3-204ENST00000392003 AQRO60306 1485 aaKnown RBP eCLIP14.01□□□□□ -0.17
COL6A3-204ENST00000392003 PCF11O94913 1555 aaKnown RBP14.01□□□□□ -0.17
COL6A3-204ENST00000392003 KIF21AQ7Z4S6 1674 aa14.01□□□□□ -0.17
COL6A3-204ENST00000392003 FYCO1Q9BQS8 1478 aa14□□□□□ -0.17
COL6A3-204ENST00000392003 FMN1Q68DA7 1419 aa14□□□□□ -0.17
COL6A3-204ENST00000392003 CTTNBP2Q8WZ74 1663 aa14□□□□□ -0.17
COL6A3-204ENST00000392003 CASKIN1Q8WXD9 1431 aa13.99□□□□□ -0.17
COL6A3-204ENST00000392003 CFAP43Q8NDM7 1665 aa13.98□□□□□ -0.17
COL6A3-204ENST00000392003 PHLDB1Q86UU1 1377 aa13.98□□□□□ -0.17
COL6A3-204ENST00000392003 WDR97A6NE52 1622 aa13.97□□□□□ -0.17
COL6A3-204ENST00000392003 RAB3GAP2Q9H2M9 1393 aa13.97□□□□□ -0.17
COL6A3-204ENST00000392003 SETD5Q9C0A6 1442 aa13.96□□□□□ -0.17
COL6A3-204ENST00000392003 CHMP7Q8WUX9 453 aaPredicted RBP13.96□□□□□ -0.18
COL6A3-204ENST00000392003 ABCA5Q8WWZ7 1642 aa13.95□□□□□ -0.18
COL6A3-204ENST00000392003 MIER1Q8N108 512 aa13.94□□□□□ -0.18
COL6A3-204ENST00000392003 MTUS2Q5JR59 1369 aa13.94□□□□□ -0.18
COL6A3-204ENST00000392003 ARID3CA6NKF2 412 aa13.93□□□□□ -0.18
COL6A3-204ENST00000392003 YTHDC1Q96MU7 727 aaKnown RBP13.93□□□□□ -0.18
COL6A3-204ENST00000392003 IFT140Q96RY7 1462 aa13.91□□□□□ -0.18
COL6A3-204ENST00000392003 GRIN2BQ13224 1484 aa13.91□□□□□ -0.18
COL6A3-204ENST00000392003 ANP32EQ9BTT0 268 aa13.91□□□□□ -0.18
COL6A3-204ENST00000392003 ANO8Q9HCE9 1232 aaPredicted RBP13.89□□□□□ -0.19
COL6A3-204ENST00000392003 PLEKHG5O94827 1062 aa13.88□□□□□ -0.19
COL6A3-204ENST00000392003 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP13.88□□□□□ -0.19
COL6A3-204ENST00000392003 ZNF608Q9ULD9 1512 aaPredicted RBP13.87□□□□□ -0.19
COL6A3-204ENST00000392003 SAMD9Q5K651 1589 aa13.86□□□□□ -0.19
COL6A3-204ENST00000392003 TARBP1Q13395 1621 aaKnown RBP13.86□□□□□ -0.19
COL6A3-204ENST00000392003 SNAPC4Q5SXM2 1469 aa13.85□□□□□ -0.19
COL6A3-204ENST00000392003 FGD6Q6ZV73 1430 aa13.85□□□□□ -0.19
COL6A3-204ENST00000392003 THOC2Q8NI27 1593 aaKnown RBP13.82□□□□□ -0.2
COL6A3-204ENST00000392003 WDR62O43379 1518 aa13.81□□□□□ -0.2
COL6A3-204ENST00000392003 MAPKBP1O60336 1514 aa13.81□□□□□ -0.2
COL6A3-204ENST00000392003 PBRM1Q86U86 1689 aa13.8□□□□□ -0.2
COL6A3-204ENST00000392003 TIMELESSQ9UNS1 1208 aa13.8□□□□□ -0.2
COL6A3-204ENST00000392003 NCOA2Q15596 1464 aa13.79□□□□□ -0.2
COL6A3-204ENST00000392003 EHBP1L1Q8N3D4 1523 aa13.79□□□□□ -0.2
COL6A3-204ENST00000392003 EIF5BO60841 1220 aaKnown RBP13.79□□□□□ -0.2
COL6A3-204ENST00000392003 CCDC18Q5T9S5 1454 aa13.79□□□□□ -0.2
COL6A3-204ENST00000392003 MYOM3Q5VTT5 1437 aa13.78□□□□□ -0.2
COL6A3-204ENST00000392003 SIN3AQ96ST3 1273 aa13.78□□□□□ -0.2
COL6A3-204ENST00000392003 IQGAP2Q13576 1575 aa13.78□□□□□ -0.2
COL6A3-204ENST00000392003 SUPT6HQ7KZ85 1726 aaKnown RBP13.78□□□□□ -0.2
COL6A3-204ENST00000392003 ADAMTS12P58397 1594 aa13.76□□□□□ -0.21
COL6A3-204ENST00000392003 CDK11AQ9UQ88 783 aaPredicted RBP13.76□□□□□ -0.21
COL6A3-204ENST00000392003 HECW1Q76N89 1606 aa13.75□□□□□ -0.21
COL6A3-204ENST00000392003 JPH4Q96JJ6 628 aa13.73□□□□□ -0.21
COL6A3-204ENST00000392003 HFM1A2PYH4 1435 aa13.72□□□□□ -0.21
COL6A3-204ENST00000392003 KIAA0586Q9BVV6 1533 aa13.72□□□□□ -0.21
COL6A3-204ENST00000392003 TONSLQ96HA7 1378 aa13.71□□□□□ -0.21
COL6A3-204ENST00000392003 GRIN2AQ12879 1464 aa13.71□□□□□ -0.21
COL6A3-204ENST00000392003 LRRIQ1Q96JM4 1722 aa13.71□□□□□ -0.21
COL6A3-204ENST00000392003 UGGT2Q9NYU1 1516 aa13.7□□□□□ -0.22
COL6A3-204ENST00000392003 UACAQ9BZF9 1416 aa13.7□□□□□ -0.22
COL6A3-204ENST00000392003 MAGI1Q96QZ7 1491 aaPredicted RBP13.69□□□□□ -0.22
COL6A3-204ENST00000392003 PTPN23Q9H3S7 1636 aa13.69□□□□□ -0.22
COL6A3-204ENST00000392003 EPRSP07814 1512 aaKnown RBP13.69□□□□□ -0.22
COL6A3-204ENST00000392003 CHIC2Q9UKJ5 165 aa13.69□□□□□ -0.22
COL6A3-204ENST00000392003 EIF4G3O43432 1585 aaKnown RBP13.69□□□□□ -0.22
COL6A3-204ENST00000392003 DAXXQ9UER7 740 aaPredicted RBP13.69□□□□□ -0.22
COL6A3-204ENST00000392003 CARMIL2Q6F5E8 1435 aa13.68□□□□□ -0.22
COL6A3-204ENST00000392003 PPP1R15AO75807 674 aaPredicted RBP13.68□□□□□ -0.22
COL6A3-204ENST00000392003 PTPRKQ15262 1439 aa13.68□□□□□ -0.22
COL6A3-204ENST00000392003 SYNJ2O15056 1496 aa13.68□□□□□ -0.22
COL6A3-204ENST00000392003 NAIPQ13075 1403 aa13.67□□□□□ -0.22
COL6A3-204ENST00000392003 RRP7BPQ9NSQ0 103 aa13.66□□□□□ -0.22
COL6A3-204ENST00000392003 TRIM52Q96A61 297 aa13.66□□□□□ -0.22
COL6A3-204ENST00000392003 ARHGEF11O15085 1522 aa13.65□□□□□ -0.22
COL6A3-204ENST00000392003 MAGI3Q5TCQ9 1506 aa13.65□□□□□ -0.22
COL6A3-204ENST00000392003 CDK13Q14004 1512 aaKnown RBP13.64□□□□□ -0.23
COL6A3-204ENST00000392003 MIA2Q96PC5 1412 aa13.64□□□□□ -0.23
COL6A3-204ENST00000392003 ZNF777Q9ULD5 760 aaPredicted RBP13.64□□□□□ -0.23
COL6A3-204ENST00000392003 DDX10Q13206 875 aaKnown RBP13.63□□□□□ -0.23
COL6A3-204ENST00000392003 TCOF1Q13428 1488 aaKnown RBP13.63□□□□□ -0.23
COL6A3-204ENST00000392003 CCDC136Q96JN2 1154 aa13.63□□□□□ -0.23
COL6A3-204ENST00000392003 PLEKHD1A6NEE1 506 aa13.61□□□□□ -0.23
COL6A3-204ENST00000392003 KIAA0556O60303 1618 aa13.6□□□□□ -0.23
COL6A3-204ENST00000392003 AKNAQ7Z591 1439 aa13.58□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 10.9 ms