RNA–Protein interactions for RNA: ENST00000389416.8

PTPRN2-202, Transcript of protein tyrosine phosphatase, receptor type N2, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PTPRN2, Length 4,692 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRN2-202ENST00000389416 KDM2AQ9Y2K7 1162 aa18.25■□□□□ 0.51
PTPRN2-202ENST00000389416 FANCD2Q9BXW9 1451 aa18.22■□□□□ 0.51
PTPRN2-202ENST00000389416 FHAD1B1AJZ9 1412 aa18.2■□□□□ 0.5
PTPRN2-202ENST00000389416 NCAPD3P42695 1498 aa18.17■□□□□ 0.5
PTPRN2-202ENST00000389416 SENP3Q9H4L4 574 aaPredicted RBP18.17■□□□□ 0.5
PTPRN2-202ENST00000389416 DDX10Q13206 875 aaKnown RBP18.16■□□□□ 0.5
PTPRN2-202ENST00000389416 HIRIP3Q9BW71 556 aaPredicted RBP18.15■□□□□ 0.5
PTPRN2-202ENST00000389416 RUSC2Q8N2Y8 1516 aa18.15■□□□□ 0.5
PTPRN2-202ENST00000389416 KANK4Q5T7N3 995 aaPredicted RBP18.14■□□□□ 0.5
PTPRN2-202ENST00000389416 VPS8Q8N3P4 1428 aa18.11■□□□□ 0.49
PTPRN2-202ENST00000389416 CCNB3Q8WWL7 1395 aa18.11■□□□□ 0.49
PTPRN2-202ENST00000389416 RGL3Q3MIN7 710 aa18.11■□□□□ 0.49
PTPRN2-202ENST00000389416 RAPGEF2Q9Y4G8 1499 aa18.08■□□□□ 0.49
PTPRN2-202ENST00000389416 CARMIL2Q6F5E8 1435 aa18.08■□□□□ 0.48
PTPRN2-202ENST00000389416 JPH4Q96JJ6 628 aa18.05■□□□□ 0.48
PTPRN2-202ENST00000389416 ARID4BQ4LE39 1312 aaPredicted RBP18.05■□□□□ 0.48
PTPRN2-202ENST00000389416 FHOD3Q2V2M9 1422 aa18.01■□□□□ 0.47
PTPRN2-202ENST00000389416 SIN3AQ96ST3 1273 aa18.01■□□□□ 0.47
PTPRN2-202ENST00000389416 SLC24A1O60721 1099 aa18■□□□□ 0.47
PTPRN2-202ENST00000389416 TRHP20396 242 aaPredicted RBP17.99■□□□□ 0.47
PTPRN2-202ENST00000389416 RAD54L2Q9Y4B4 1467 aa17.99■□□□□ 0.47
PTPRN2-202ENST00000389416 FGD5Q6ZNL6 1462 aa17.99■□□□□ 0.47
PTPRN2-202ENST00000389416 FMN1Q68DA7 1419 aa17.98■□□□□ 0.47
PTPRN2-202ENST00000389416 NEFMP07197 916 aa17.97■□□□□ 0.47
PTPRN2-202ENST00000389416 EIF4G2P78344 907 aaKnown RBP eCLIP17.96■□□□□ 0.47
PTPRN2-202ENST00000389416 PPP1R15AO75807 674 aaPredicted RBP17.94■□□□□ 0.46
PTPRN2-202ENST00000389416 IGF1RP08069 1367 aa17.94■□□□□ 0.46
PTPRN2-202ENST00000389416 NESP48681 1621 aa17.94■□□□□ 0.46
PTPRN2-202ENST00000389416 CLSPNQ9HAW4 1339 aa17.94■□□□□ 0.46
PTPRN2-202ENST00000389416 GTF3C3Q9Y5Q9 886 aa17.93■□□□□ 0.46
PTPRN2-202ENST00000389416 FAM9BQ8IZU0 186 aa17.93■□□□□ 0.46
PTPRN2-202ENST00000389416 DNAJC5BQ9UF47 199 aa17.93■□□□□ 0.46
PTPRN2-202ENST00000389416 CC2D2AQ9P2K1 1620 aa17.91■□□□□ 0.46
PTPRN2-202ENST00000389416 ARHGAP35Q9NRY4 1499 aa17.9■□□□□ 0.46
PTPRN2-202ENST00000389416 DAXXQ9UER7 740 aaPredicted RBP17.89■□□□□ 0.46
PTPRN2-202ENST00000389416 GAPVD1Q14C86 1478 aa17.89■□□□□ 0.45
PTPRN2-202ENST00000389416 SALL2Q9Y467 1007 aaPredicted RBP17.89■□□□□ 0.45
PTPRN2-202ENST00000389416 MLECQ14165 292 aa17.89■□□□□ 0.45
PTPRN2-202ENST00000389416 BICRAQ9NZM4 1560 aa17.88■□□□□ 0.45
PTPRN2-202ENST00000389416 ACIN1Q9UKV3 1341 aaKnown RBP17.88■□□□□ 0.45
PTPRN2-202ENST00000389416 CFTRP13569 1480 aa17.87■□□□□ 0.45
PTPRN2-202ENST00000389416 AQRO60306 1485 aaKnown RBP eCLIP17.87■□□□□ 0.455e-7■■■■■ 27.2
PTPRN2-202ENST00000389416 HNRNPUQ00839 825 aaKnown RBP eCLIP17.87■□□□□ 0.45
PTPRN2-202ENST00000389416 EFCAB2Q5VUJ9 269 aa17.86■□□□□ 0.45
PTPRN2-202ENST00000389416 TMC1Q8TDI8 760 aa17.86■□□□□ 0.45
PTPRN2-202ENST00000389416 GGT6Q6P531 493 aa17.84■□□□□ 0.45
PTPRN2-202ENST00000389416 CANXP27824 592 aaKnown RBP17.84■□□□□ 0.45
PTPRN2-202ENST00000389416 MIER1Q8N108 512 aa17.82■□□□□ 0.44
PTPRN2-202ENST00000389416 CARD11Q9BXL7 1154 aa17.82■□□□□ 0.44
PTPRN2-202ENST00000389416 FOXD1Q16676 465 aa17.82■□□□□ 0.44
PTPRN2-202ENST00000389416 BCL11AQ9H165 835 aa17.82■□□□□ 0.44
PTPRN2-202ENST00000389416 MRS2Q9HD23 443 aa17.81■□□□□ 0.44
PTPRN2-202ENST00000389416 HNRNPMP52272 730 aaKnown RBP eCLIP17.8■□□□□ 0.444e-7■■■■■ 27.1
PTPRN2-202ENST00000389416 OSCARQ8IYS5 282 aa17.8■□□□□ 0.44
PTPRN2-202ENST00000389416 CYB5RLQ6IPT4 315 aa17.8■□□□□ 0.44
PTPRN2-202ENST00000389416 SETD5Q9C0A6 1442 aa17.79■□□□□ 0.44
PTPRN2-202ENST00000389416 PTPRGP23470 1445 aa17.78■□□□□ 0.44
PTPRN2-202ENST00000389416 PLEKHG5O94827 1062 aa17.78■□□□□ 0.44
PTPRN2-202ENST00000389416 PKD2Q13563 968 aa17.77■□□□□ 0.44
PTPRN2-202ENST00000389416 HMGXB3Q12766 1538 aa17.77■□□□□ 0.43
PTPRN2-202ENST00000389416 DCAF11Q8TEB1 546 aa17.77■□□□□ 0.43
PTPRN2-202ENST00000389416 C14orf37Q86TY3 774 aa17.75■□□□□ 0.43
PTPRN2-202ENST00000389416 RAB3GAP2Q9H2M9 1393 aa17.73■□□□□ 0.43
PTPRN2-202ENST00000389416 KANK1Q14678 1352 aa17.72■□□□□ 0.43
PTPRN2-202ENST00000389416 SCAF1Q9H7N4 1312 aaKnown RBP17.71■□□□□ 0.43
PTPRN2-202ENST00000389416 SYNJ1O43426 1573 aa17.71■□□□□ 0.43
PTPRN2-202ENST00000389416 WDR43Q15061 677 aaKnown RBP eCLIP17.7■□□□□ 0.42
PTPRN2-202ENST00000389416 NUP155O75694 1391 aa17.69■□□□□ 0.42
PTPRN2-202ENST00000389416 CCDC18Q5T9S5 1454 aa17.69■□□□□ 0.42
PTPRN2-202ENST00000389416 KIF3BO15066 747 aa17.69■□□□□ 0.42
PTPRN2-202ENST00000389416 ZBTB47Q9UFB7 747 aaPredicted RBP17.69■□□□□ 0.42
PTPRN2-202ENST00000389416 MPHOSPH9Q99550 1183 aa17.69■□□□□ 0.42
PTPRN2-202ENST00000389416 ANKRD30AQ9BXX3 1397 aa17.68■□□□□ 0.42
PTPRN2-202ENST00000389416 SENP3-EIF4A1A0A087X0R7 540 aa17.66■□□□□ 0.42
PTPRN2-202ENST00000389416 SPAG9O60271 1321 aaKnown RBP17.65■□□□□ 0.42
PTPRN2-202ENST00000389416 POGKQ9P215 609 aa17.65■□□□□ 0.42
PTPRN2-202ENST00000389416 TOPBP1Q92547 1522 aa17.65■□□□□ 0.42
PTPRN2-202ENST00000389416 MRC2Q9UBG0 1479 aa17.64■□□□□ 0.41
PTPRN2-202ENST00000389416 GRIN2BQ13224 1484 aa17.64■□□□□ 0.41
PTPRN2-202ENST00000389416 POLA1P09884 1462 aaPredicted RBP17.63■□□□□ 0.41
PTPRN2-202ENST00000389416 ZBTB7CA1YPR0 619 aa17.63■□□□□ 0.41
PTPRN2-202ENST00000389416 CDCA8Q53HL2 280 aa17.63■□□□□ 0.41
PTPRN2-202ENST00000389416 FKBP8Q14318 412 aa17.62■□□□□ 0.41
PTPRN2-202ENST00000389416 CUX1P39880 1505 aa17.62■□□□□ 0.41
PTPRN2-202ENST00000389416 KNSTRNQ9Y448 316 aa17.62■□□□□ 0.41
PTPRN2-202ENST00000389416 RSPH4AQ5TD94 716 aa17.6■□□□□ 0.41
PTPRN2-202ENST00000389416 TIMELESSQ9UNS1 1208 aa17.59■□□□□ 0.41
PTPRN2-202ENST00000389416 SAFB2Q14151 953 aaKnown RBP eCLIP17.58■□□□□ 0.41
PTPRN2-202ENST00000389416 PPM1GO15355 546 aaPredicted RBP17.57■□□□□ 0.4
PTPRN2-202ENST00000389416 ZNF644Q9H582 1327 aaPredicted RBP17.54■□□□□ 0.4
PTPRN2-202ENST00000389416 IFT140Q96RY7 1462 aa17.53■□□□□ 0.4
PTPRN2-202ENST00000389416 STK26Q9P289 416 aa17.53■□□□□ 0.4
PTPRN2-202ENST00000389416 TOP2BQ02880 1626 aa17.53■□□□□ 0.4
PTPRN2-202ENST00000389416 TNNT2P45379 298 aaPredicted RBP17.53■□□□□ 0.4
PTPRN2-202ENST00000389416 WASHC2CQ9Y4E1 1318 aa17.53■□□□□ 0.4
PTPRN2-202ENST00000389416 HSPA5P11021 654 aaKnown RBP17.51■□□□□ 0.39
PTPRN2-202ENST00000389416 LMOD2Q6P5Q4 547 aa17.51■□□□□ 0.39
PTPRN2-202ENST00000389416 L3MBTL2Q969R5 705 aa17.51■□□□□ 0.39
PTPRN2-202ENST00000389416 KIF21BO75037 1637 aa17.51■□□□□ 0.39
PTPRN2-202ENST00000389416 UNC13AQ9UPW8 1703 aa17.5■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms