RNA–Protein interactions for RNA: ENST00000381990.6

GPNMB-202, Transcript of glycoprotein nmb, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene GPNMB, Length 2,763 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPNMB-202ENST00000381990 ARHGAP35Q9NRY4 1499 aa13.46□□□□□ -0.25
GPNMB-202ENST00000381990 DIEXFQ68CQ4 756 aaKnown RBP13.46□□□□□ -0.26
GPNMB-202ENST00000381990 APLP2Q06481 763 aa13.45□□□□□ -0.26
GPNMB-202ENST00000381990 WDR62O43379 1518 aa13.44□□□□□ -0.26
GPNMB-202ENST00000381990 TTBK1Q5TCY1 1321 aaPredicted RBP13.44□□□□□ -0.26
GPNMB-202ENST00000381990 ERCC6Q03468 1493 aa13.4□□□□□ -0.26
GPNMB-202ENST00000381990 CTTNBP2Q8WZ74 1663 aa13.4□□□□□ -0.26
GPNMB-202ENST00000381990 IFT140Q96RY7 1462 aa13.39□□□□□ -0.27
GPNMB-202ENST00000381990 GTF3C3Q9Y5Q9 886 aa13.39□□□□□ -0.27
GPNMB-202ENST00000381990 PBRM1Q86U86 1689 aa13.38□□□□□ -0.27
GPNMB-202ENST00000381990 THOC2Q8NI27 1593 aaKnown RBP13.36□□□□□ -0.27
GPNMB-202ENST00000381990 EFCAB5A4FU69 1503 aa13.36□□□□□ -0.27
GPNMB-202ENST00000381990 AQRO60306 1485 aaKnown RBP eCLIP13.35□□□□□ -0.27
GPNMB-202ENST00000381990 GRIN2BQ13224 1484 aa13.34□□□□□ -0.27
GPNMB-202ENST00000381990 FHAD1B1AJZ9 1412 aa13.34□□□□□ -0.27
GPNMB-202ENST00000381990 ADAMTS12P58397 1594 aa13.32□□□□□ -0.28
GPNMB-202ENST00000381990 ZNF608Q9ULD9 1512 aaPredicted RBP13.31□□□□□ -0.28
GPNMB-202ENST00000381990 MAP3K1Q13233 1512 aa13.3□□□□□ -0.28
GPNMB-202ENST00000381990 ZNF316A6NFI3 1004 aaPredicted RBP13.29□□□□□ -0.28
GPNMB-202ENST00000381990 KANK4Q5T7N3 995 aaPredicted RBP13.28□□□□□ -0.28
GPNMB-202ENST00000381990 FHOD3Q2V2M9 1422 aa13.27□□□□□ -0.28
GPNMB-202ENST00000381990 EIF4G3O43432 1585 aaKnown RBP13.27□□□□□ -0.28
GPNMB-202ENST00000381990 P3H3Q8IVL6 736 aa13.27□□□□□ -0.29
GPNMB-202ENST00000381990 SAMD9Q5K651 1589 aa13.27□□□□□ -0.29
GPNMB-202ENST00000381990 TIAM1Q13009 1591 aa13.26□□□□□ -0.29
GPNMB-202ENST00000381990 PCF11O94913 1555 aaKnown RBP13.26□□□□□ -0.29
GPNMB-202ENST00000381990 FYCO1Q9BQS8 1478 aa13.24□□□□□ -0.29
GPNMB-202ENST00000381990 FMN1Q68DA7 1419 aa13.24□□□□□ -0.29
GPNMB-202ENST00000381990 CASKIN1Q8WXD9 1431 aa13.23□□□□□ -0.29
GPNMB-202ENST00000381990 CFAP43Q8NDM7 1665 aa13.23□□□□□ -0.29
GPNMB-202ENST00000381990 SNAPC4Q5SXM2 1469 aa13.23□□□□□ -0.29
GPNMB-202ENST00000381990 IQGAP2Q13576 1575 aa13.22□□□□□ -0.29
GPNMB-202ENST00000381990 MAGI1Q96QZ7 1491 aaPredicted RBP13.21□□□□□ -0.3
GPNMB-202ENST00000381990 LRRC9Q6ZRR7 1453 aa13.2□□□□□ -0.3
GPNMB-202ENST00000381990 RRBP1Q9P2E9 1410 aaKnown RBP13.2□□□□□ -0.3
GPNMB-202ENST00000381990 HNRNPUL2Q1KMD3 747 aaKnown RBP13.19□□□□□ -0.3
GPNMB-202ENST00000381990 GRIN2AQ12879 1464 aa13.18□□□□□ -0.3
GPNMB-202ENST00000381990 KIAA0586Q9BVV6 1533 aa13.16□□□□□ -0.3
GPNMB-202ENST00000381990 UGGT2Q9NYU1 1516 aa13.16□□□□□ -0.3
GPNMB-202ENST00000381990 ATP1B4Q9UN42 357 aaPredicted RBP13.16□□□□□ -0.3
GPNMB-202ENST00000381990 SYNJ2O15056 1496 aa13.15□□□□□ -0.3
GPNMB-202ENST00000381990 CCNB3Q8WWL7 1395 aa13.14□□□□□ -0.31
GPNMB-202ENST00000381990 CHMP7Q8WUX9 453 aaPredicted RBP13.12□□□□□ -0.31
GPNMB-202ENST00000381990 CLSPNQ9HAW4 1339 aa13.1□□□□□ -0.31
GPNMB-202ENST00000381990 LRRIQ1Q96JM4 1722 aa13.1□□□□□ -0.31
GPNMB-202ENST00000381990 CEP170Q5SW79 1584 aa13.09□□□□□ -0.31
GPNMB-202ENST00000381990 PHLDB1Q86UU1 1377 aa13.09□□□□□ -0.31
GPNMB-202ENST00000381990 KIAA0556O60303 1618 aa13.08□□□□□ -0.32
GPNMB-202ENST00000381990 DISP1Q96F81 1524 aa13.08□□□□□ -0.32
GPNMB-202ENST00000381990 HECW1Q76N89 1606 aa13.08□□□□□ -0.32
GPNMB-202ENST00000381990 CCDC18Q5T9S5 1454 aa13.07□□□□□ -0.32
GPNMB-202ENST00000381990 NUP160Q12769 1436 aa13.07□□□□□ -0.32
GPNMB-202ENST00000381990 MIER1Q8N108 512 aa13.07□□□□□ -0.32
GPNMB-202ENST00000381990 MTUS2Q5JR59 1369 aa13.07□□□□□ -0.32
GPNMB-202ENST00000381990 FBLN2P98095 1184 aa13.06□□□□□ -0.32
GPNMB-202ENST00000381990 YTHDC1Q96MU7 727 aaKnown RBP13.06□□□□□ -0.32
GPNMB-202ENST00000381990 EHBP1L1Q8N3D4 1523 aa13.04□□□□□ -0.32
GPNMB-202ENST00000381990 EPRSP07814 1512 aaKnown RBP13.02□□□□□ -0.32
GPNMB-202ENST00000381990 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP13.02□□□□□ -0.33
GPNMB-202ENST00000381990 SUPT6HQ7KZ85 1726 aaKnown RBP13.01□□□□□ -0.33
GPNMB-202ENST00000381990 NCOA2Q15596 1464 aa13□□□□□ -0.33
GPNMB-202ENST00000381990 CARMIL2Q6F5E8 1435 aa12.99□□□□□ -0.33
GPNMB-202ENST00000381990 FGD6Q6ZV73 1430 aa12.99□□□□□ -0.33
GPNMB-202ENST00000381990 FAM50AQ14320 339 aaKnown RBP12.99□□□□□ -0.33
GPNMB-202ENST00000381990 JPH4Q96JJ6 628 aa12.99□□□□□ -0.33
GPNMB-202ENST00000381990 ITGAEP38570 1179 aa12.98□□□□□ -0.33
GPNMB-202ENST00000381990 MAGI3Q5TCQ9 1506 aa12.98□□□□□ -0.33
GPNMB-202ENST00000381990 RAPGEF6Q8TEU7 1601 aa12.98□□□□□ -0.33
GPNMB-202ENST00000381990 ARHGEF11O15085 1522 aa12.97□□□□□ -0.33
GPNMB-202ENST00000381990 CDK13Q14004 1512 aaKnown RBP12.97□□□□□ -0.33
GPNMB-202ENST00000381990 MYOM3Q5VTT5 1437 aa12.97□□□□□ -0.33
GPNMB-202ENST00000381990 NUP153P49790 1475 aaKnown RBP12.96□□□□□ -0.34
GPNMB-202ENST00000381990 DHX57Q6P158 1386 aaKnown RBP12.95□□□□□ -0.34
GPNMB-202ENST00000381990 CHD1O14646 1710 aa12.95□□□□□ -0.34
GPNMB-202ENST00000381990 SETD5Q9C0A6 1442 aa12.93□□□□□ -0.34
GPNMB-202ENST00000381990 RAB3GAP2Q9H2M9 1393 aa12.92□□□□□ -0.34
GPNMB-202ENST00000381990 PLB1Q6P1J6 1458 aa12.9□□□□□ -0.34
GPNMB-202ENST00000381990 ARID3CA6NKF2 412 aa12.9□□□□□ -0.34
GPNMB-202ENST00000381990 PTPN23Q9H3S7 1636 aa12.9□□□□□ -0.34
GPNMB-202ENST00000381990 CDK11AQ9UQ88 783 aaPredicted RBP12.9□□□□□ -0.34
GPNMB-202ENST00000381990 TCOF1Q13428 1488 aaKnown RBP12.88□□□□□ -0.35
GPNMB-202ENST00000381990 PRG4Q92954 1404 aaPredicted RBP12.88□□□□□ -0.35
GPNMB-202ENST00000381990 MIA2Q96PC5 1412 aa12.88□□□□□ -0.35
GPNMB-202ENST00000381990 ABCA8O94911 1581 aa12.88□□□□□ -0.35
GPNMB-202ENST00000381990 SHROOM2Q13796 1616 aa12.87□□□□□ -0.35
GPNMB-202ENST00000381990 TROQ12816 1431 aaPredicted RBP12.85□□□□□ -0.35
GPNMB-202ENST00000381990 SUPT16HQ9Y5B9 1047 aaKnown RBP12.85□□□□□ -0.35
GPNMB-202ENST00000381990 PTPRKQ15262 1439 aa12.84□□□□□ -0.35
GPNMB-202ENST00000381990 PTPRGP23470 1445 aa12.83□□□□□ -0.35
GPNMB-202ENST00000381990 HFM1A2PYH4 1435 aa12.83□□□□□ -0.36
GPNMB-202ENST00000381990 ADCY10Q96PN6 1610 aa12.82□□□□□ -0.36
GPNMB-202ENST00000381990 ATP10BO94823 1461 aa12.8□□□□□ -0.36
GPNMB-202ENST00000381990 MAPKBP1O60336 1514 aa12.8□□□□□ -0.36
GPNMB-202ENST00000381990 CLASP1Q7Z460 1538 aa12.8□□□□□ -0.36
GPNMB-202ENST00000381990 NAIPQ13075 1403 aa12.79□□□□□ -0.36
GPNMB-202ENST00000381990 ITSN2Q9NZM3 1697 aa12.79□□□□□ -0.36
GPNMB-202ENST00000381990 AKNAQ7Z591 1439 aa12.78□□□□□ -0.36
GPNMB-202ENST00000381990 KIF14Q15058 1648 aa12.78□□□□□ -0.36
GPNMB-202ENST00000381990 PLEKHD1A6NEE1 506 aa12.77□□□□□ -0.36
GPNMB-202ENST00000381990 UACAQ9BZF9 1416 aa12.76□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms