RNA–Protein interactions for RNA: ENST00000378839.1

CCDC3-202, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CCDC3, Length 3,180 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-202ENST00000378839 PCF11O94913 1555 aaKnown RBP19.96■□□□□ 0.79
CCDC3-202ENST00000378839 MAP3K1Q13233 1512 aa19.95■□□□□ 0.78
CCDC3-202ENST00000378839 PDS5BQ9NTI5 1447 aa19.94■□□□□ 0.78
CCDC3-202ENST00000378839 CUL7Q14999 1698 aa19.94■□□□□ 0.78
CCDC3-202ENST00000378839 LRRC9Q6ZRR7 1453 aa19.94■□□□□ 0.78
CCDC3-202ENST00000378839 ABCA5Q8WWZ7 1642 aa19.93■□□□□ 0.78
CCDC3-202ENST00000378839 PHLDB1Q86UU1 1377 aa19.91■□□□□ 0.78
CCDC3-202ENST00000378839 ITGAEP38570 1179 aa19.9■□□□□ 0.78
CCDC3-202ENST00000378839 SCAF1Q9H7N4 1312 aaKnown RBP19.89■□□□□ 0.78
CCDC3-202ENST00000378839 CTTNBP2Q8WZ74 1663 aa19.89■□□□□ 0.77
CCDC3-202ENST00000378839 CFAP43Q8NDM7 1665 aa19.88■□□□□ 0.77
CCDC3-202ENST00000378839 FHAD1B1AJZ9 1412 aa19.87■□□□□ 0.77
CCDC3-202ENST00000378839 GAPVD1Q14C86 1478 aa19.87■□□□□ 0.77
CCDC3-202ENST00000378839 TARBP1Q13395 1621 aaKnown RBP19.84■□□□□ 0.77
CCDC3-202ENST00000378839 EFCAB5A4FU69 1503 aa19.84■□□□□ 0.77
CCDC3-202ENST00000378839 ATP1B4Q9UN42 357 aaPredicted RBP19.83■□□□□ 0.77
CCDC3-202ENST00000378839 CASKIN1Q8WXD9 1431 aa19.81■□□□□ 0.76
CCDC3-202ENST00000378839 PELP1Q8IZL8 1130 aaKnown RBP19.81■□□□□ 0.76
CCDC3-202ENST00000378839 FYCO1Q9BQS8 1478 aa19.8■□□□□ 0.76
CCDC3-202ENST00000378839 CLSPNQ9HAW4 1339 aa19.8■□□□□ 0.76
CCDC3-202ENST00000378839 SNAPC4Q5SXM2 1469 aa19.79■□□□□ 0.76
CCDC3-202ENST00000378839 NEUROD1Q13562 356 aa19.79■□□□□ 0.76
CCDC3-202ENST00000378839 RAB3GAP2Q9H2M9 1393 aa19.78■□□□□ 0.76
CCDC3-202ENST00000378839 AQRO60306 1485 aaKnown RBP eCLIP19.77■□□□□ 0.76
CCDC3-202ENST00000378839 SAMD9Q5K651 1589 aa19.77■□□□□ 0.75
CCDC3-202ENST00000378839 ERCC6Q03468 1493 aa19.75■□□□□ 0.75
CCDC3-202ENST00000378839 LRRIQ1Q96JM4 1722 aa19.75■□□□□ 0.75
CCDC3-202ENST00000378839 FAM50AQ14320 339 aaKnown RBP19.73■□□□□ 0.75
CCDC3-202ENST00000378839 MIER1Q8N108 512 aa19.73■□□□□ 0.75
CCDC3-202ENST00000378839 MAPKBP1O60336 1514 aa19.72■□□□□ 0.75
CCDC3-202ENST00000378839 ACIN1Q9UKV3 1341 aaKnown RBP19.72■□□□□ 0.75
CCDC3-202ENST00000378839 MRC2Q9UBG0 1479 aa19.72■□□□□ 0.75
CCDC3-202ENST00000378839 FMN1Q68DA7 1419 aa19.7■□□□□ 0.74
CCDC3-202ENST00000378839 SETD5Q9C0A6 1442 aa19.68■□□□□ 0.74
CCDC3-202ENST00000378839 PBRM1Q86U86 1689 aa19.68■□□□□ 0.74
CCDC3-202ENST00000378839 THOC2Q8NI27 1593 aaKnown RBP19.67■□□□□ 0.74
CCDC3-202ENST00000378839 GRIN2BQ13224 1484 aa19.67■□□□□ 0.74
CCDC3-202ENST00000378839 WDR62O43379 1518 aa19.65■□□□□ 0.74
CCDC3-202ENST00000378839 ZNF608Q9ULD9 1512 aaPredicted RBP19.62■□□□□ 0.73
CCDC3-202ENST00000378839 ADAMTS12P58397 1594 aa19.61■□□□□ 0.73
CCDC3-202ENST00000378839 FGD6Q6ZV73 1430 aa19.6■□□□□ 0.73
CCDC3-202ENST00000378839 MAGI3Q5TCQ9 1506 aa19.59■□□□□ 0.73
CCDC3-202ENST00000378839 PTPRKQ15262 1439 aa19.59■□□□□ 0.73
CCDC3-202ENST00000378839 MTUS2Q5JR59 1369 aa19.57■□□□□ 0.72
CCDC3-202ENST00000378839 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP19.57■□□□□ 0.72
CCDC3-202ENST00000378839 SIN3AQ96ST3 1273 aa19.56■□□□□ 0.72
CCDC3-202ENST00000378839 YTHDC1Q96MU7 727 aaKnown RBP19.56■□□□□ 0.72
CCDC3-202ENST00000378839 NCOA2Q15596 1464 aa19.55■□□□□ 0.72
CCDC3-202ENST00000378839 IQGAP2Q13576 1575 aa19.54■□□□□ 0.72
CCDC3-202ENST00000378839 CENPBP07199 599 aaPredicted RBP19.51■□□□□ 0.71
CCDC3-202ENST00000378839 IFT140Q96RY7 1462 aa19.5■□□□□ 0.71
CCDC3-202ENST00000378839 ARHGEF11O15085 1522 aa19.49■□□□□ 0.71
CCDC3-202ENST00000378839 MYOM3Q5VTT5 1437 aa19.49■□□□□ 0.71
CCDC3-202ENST00000378839 GTF3C3Q9Y5Q9 886 aa19.49■□□□□ 0.71
CCDC3-202ENST00000378839 UGGT2Q9NYU1 1516 aa19.48■□□□□ 0.71
CCDC3-202ENST00000378839 EHBP1L1Q8N3D4 1523 aa19.47■□□□□ 0.71
CCDC3-202ENST00000378839 SUPT6HQ7KZ85 1726 aaKnown RBP19.47■□□□□ 0.71
CCDC3-202ENST00000378839 CDK13Q14004 1512 aaKnown RBP19.46■□□□□ 0.71
CCDC3-202ENST00000378839 ARID3CA6NKF2 412 aa19.45■□□□□ 0.7
CCDC3-202ENST00000378839 EPRSP07814 1512 aaKnown RBP19.44■□□□□ 0.7
CCDC3-202ENST00000378839 EIF4G3O43432 1585 aaKnown RBP19.43■□□□□ 0.7
CCDC3-202ENST00000378839 HFM1A2PYH4 1435 aa19.42■□□□□ 0.7
CCDC3-202ENST00000378839 HECW1Q76N89 1606 aa19.42■□□□□ 0.7
CCDC3-202ENST00000378839 PTPN23Q9H3S7 1636 aa19.42■□□□□ 0.7
CCDC3-202ENST00000378839 DISP1Q96F81 1524 aa19.42■□□□□ 0.7
CCDC3-202ENST00000378839 CCDC18Q5T9S5 1454 aa19.41■□□□□ 0.7
CCDC3-202ENST00000378839 NAIPQ13075 1403 aa19.41■□□□□ 0.7
CCDC3-202ENST00000378839 KIAA0586Q9BVV6 1533 aa19.37■□□□□ 0.69
CCDC3-202ENST00000378839 GRIN2AQ12879 1464 aa19.37■□□□□ 0.69
CCDC3-202ENST00000378839 KIAA0556O60303 1618 aa19.36■□□□□ 0.69
CCDC3-202ENST00000378839 TCOF1Q13428 1488 aaKnown RBP19.35■□□□□ 0.69
CCDC3-202ENST00000378839 UACAQ9BZF9 1416 aa19.33■□□□□ 0.69
CCDC3-202ENST00000378839 CHIC2Q9UKJ5 165 aa19.32■□□□□ 0.68
CCDC3-202ENST00000378839 KDM6BO15054 1643 aa19.32■□□□□ 0.68
CCDC3-202ENST00000378839 RRP7BPQ9NSQ0 103 aa19.32■□□□□ 0.68
CCDC3-202ENST00000378839 PPP1R15AO75807 674 aaPredicted RBP19.31■□□□□ 0.68
CCDC3-202ENST00000378839 NUP153P49790 1475 aaKnown RBP19.31■□□□□ 0.68
CCDC3-202ENST00000378839 CEP170Q5SW79 1584 aa19.3■□□□□ 0.68
CCDC3-202ENST00000378839 DENND4BO75064 1496 aaPredicted RBP19.3■□□□□ 0.68
CCDC3-202ENST00000378839 HIRIP3Q9BW71 556 aaPredicted RBP19.28■□□□□ 0.68
CCDC3-202ENST00000378839 TIMELESSQ9UNS1 1208 aa19.27■□□□□ 0.67
CCDC3-202ENST00000378839 KCNH8Q96L42 1107 aa19.25■□□□□ 0.67
CCDC3-202ENST00000378839 RAPGEF6Q8TEU7 1601 aa19.25■□□□□ 0.67
CCDC3-202ENST00000378839 KDM5BQ9UGL1 1544 aa19.24■□□□□ 0.67
CCDC3-202ENST00000378839 MAGI1Q96QZ7 1491 aaPredicted RBP19.24■□□□□ 0.67
CCDC3-202ENST00000378839 MIA2Q96PC5 1412 aa19.24■□□□□ 0.67
CCDC3-202ENST00000378839 ZNF644Q9H582 1327 aaPredicted RBP19.24■□□□□ 0.67
CCDC3-202ENST00000378839 GCC2Q8IWJ2 1684 aa19.23■□□□□ 0.67
CCDC3-202ENST00000378839 SYNJ2O15056 1496 aa19.23■□□□□ 0.67
CCDC3-202ENST00000378839 CHMP7Q8WUX9 453 aaPredicted RBP19.22■□□□□ 0.67
CCDC3-202ENST00000378839 PLB1Q6P1J6 1458 aa19.21■□□□□ 0.67
CCDC3-202ENST00000378839 FBLN2P98095 1184 aa19.21■□□□□ 0.67
CCDC3-202ENST00000378839 DDX10Q13206 875 aaKnown RBP19.2■□□□□ 0.66
CCDC3-202ENST00000378839 PRG4Q92954 1404 aaPredicted RBP19.19■□□□□ 0.66
CCDC3-202ENST00000378839 TONSLQ96HA7 1378 aa19.18■□□□□ 0.66
CCDC3-202ENST00000378839 NUP160Q12769 1436 aa19.17■□□□□ 0.66
CCDC3-202ENST00000378839 AKNAQ7Z591 1439 aa19.17■□□□□ 0.66
CCDC3-202ENST00000378839 ABCC5O15440 1437 aa19.16■□□□□ 0.66
CCDC3-202ENST00000378839 DAPK1P53355 1430 aa19.16■□□□□ 0.66
CCDC3-202ENST00000378839 JPH4Q96JJ6 628 aa19.14■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 9.3 ms