RNA–Protein interactions for RNA: ENST00000378391.6

PRDM16-203, Transcript of PR/SET domain 16, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PRDM16, Length 5,447 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRDM16-203ENST00000378391 CCDC136Q96JN2 1154 aa19.47■□□□□ 0.71
PRDM16-203ENST00000378391 UPF2Q9HAU5 1272 aaKnown RBP19.47■□□□□ 0.71
PRDM16-203ENST00000378391 TSHZ2Q9NRE2 1034 aa19.47■□□□□ 0.71
PRDM16-203ENST00000378391 RUSC2Q8N2Y8 1516 aa19.46■□□□□ 0.71
PRDM16-203ENST00000378391 TMC1Q8TDI8 760 aa19.41■□□□□ 0.7
PRDM16-203ENST00000378391 IRX6P78412 446 aaPredicted RBP19.4■□□□□ 0.7
PRDM16-203ENST00000378391 HSP90AA1P07900 732 aaKnown RBP19.39■□□□□ 0.7
PRDM16-203ENST00000378391 MRS2Q9HD23 443 aa19.37■□□□□ 0.69
PRDM16-203ENST00000378391 GOLGA6L2Q8N9W4 650 aaPredicted RBP19.37■□□□□ 0.69
PRDM16-203ENST00000378391 CCNB3Q8WWL7 1395 aa19.36■□□□□ 0.69
PRDM16-203ENST00000378391 KANK4Q5T7N3 995 aaPredicted RBP19.35■□□□□ 0.69
PRDM16-203ENST00000378391 SIN3AQ96ST3 1273 aa19.34■□□□□ 0.69
PRDM16-203ENST00000378391 NBR1Q14596 966 aa19.34■□□□□ 0.69
PRDM16-203ENST00000378391 DHX57Q6P158 1386 aaKnown RBP19.33■□□□□ 0.68
PRDM16-203ENST00000378391 SALL2Q9Y467 1007 aaPredicted RBP19.31■□□□□ 0.68
PRDM16-203ENST00000378391 BAZ1BQ9UIG0 1483 aaKnown RBP19.3■□□□□ 0.68
PRDM16-203ENST00000378391 RBM19Q9Y4C8 960 aaKnown RBP19.3■□□□□ 0.68
PRDM16-203ENST00000378391 AMER1Q5JTC6 1135 aaPredicted RBP19.27■□□□□ 0.68
PRDM16-203ENST00000378391 NCLP19338 710 aaKnown RBP19.27■□□□□ 0.67
PRDM16-203ENST00000378391 RAPGEF2Q9Y4G8 1499 aa19.26■□□□□ 0.67
PRDM16-203ENST00000378391 CHIC2Q9UKJ5 165 aa19.26■□□□□ 0.67
PRDM16-203ENST00000378391 SMARCA4P51532 1647 aa19.26■□□□□ 0.67
PRDM16-203ENST00000378391 SMARCA2P51531 1590 aa19.25■□□□□ 0.67
PRDM16-203ENST00000378391 KIF27Q86VH2 1401 aa19.25■□□□□ 0.67
PRDM16-203ENST00000378391 KCNH8Q96L42 1107 aa19.25■□□□□ 0.67
PRDM16-203ENST00000378391 EIF4G2P78344 907 aaKnown RBP eCLIP19.24■□□□□ 0.67
PRDM16-203ENST00000378391 TRIM44Q96DX7 344 aaPredicted RBP19.24■□□□□ 0.67
PRDM16-203ENST00000378391 WDR43Q15061 677 aaKnown RBP eCLIP19.22■□□□□ 0.67
PRDM16-203ENST00000378391 MTUS2Q5JR59 1369 aa19.2■□□□□ 0.66
PRDM16-203ENST00000378391 RAB3GAP2Q9H2M9 1393 aa19.2■□□□□ 0.66
PRDM16-203ENST00000378391 CCER2I3L3R5 266 aa19.2■□□□□ 0.66
PRDM16-203ENST00000378391 SETD5Q9C0A6 1442 aa19.18■□□□□ 0.66
PRDM16-203ENST00000378391 CHGAP10645 457 aaKnown RBP19.16■□□□□ 0.66
PRDM16-203ENST00000378391 TSPY4P0CV99 314 aa19.15■□□□□ 0.66
PRDM16-203ENST00000378391 TSPY10P0CW01 314 aa19.15■□□□□ 0.66
PRDM16-203ENST00000378391 DDRGK1Q96HY6 314 aa19.14■□□□□ 0.65
PRDM16-203ENST00000378391 TIMELESSQ9UNS1 1208 aa19.11■□□□□ 0.65
PRDM16-203ENST00000378391 KDM2AQ9Y2K7 1162 aa19.11■□□□□ 0.65
PRDM16-203ENST00000378391 PPP4R2Q9NY27 417 aa19.08■□□□□ 0.65
PRDM16-203ENST00000378391 KIF21BO75037 1637 aa19.07■□□□□ 0.64
PRDM16-203ENST00000378391 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.07■□□□□ 0.64
PRDM16-203ENST00000378391 BECN1Q14457 450 aa19.06■□□□□ 0.64
PRDM16-203ENST00000378391 RTN4Q9NQC3 1192 aaKnown RBP19.06■□□□□ 0.64
PRDM16-203ENST00000378391 STAG3Q9UJ98 1225 aa19.06■□□□□ 0.64
PRDM16-203ENST00000378391 ERICH6BQ5W0A0 696 aa19.04■□□□□ 0.64
PRDM16-203ENST00000378391 ARXQ96QS3 562 aa19.04■□□□□ 0.64
PRDM16-203ENST00000378391 ESF1Q9H501 851 aaKnown RBP19.04■□□□□ 0.64
PRDM16-203ENST00000378391 NAP1L5Q96NT1 182 aaPredicted RBP19.03■□□□□ 0.64
PRDM16-203ENST00000378391 RRP7BPQ9NSQ0 103 aa19.03■□□□□ 0.64
PRDM16-203ENST00000378391 PPP1R15AO75807 674 aaPredicted RBP18.99■□□□□ 0.63
PRDM16-203ENST00000378391 B4GALNT3Q6L9W6 998 aa18.99■□□□□ 0.63
PRDM16-203ENST00000378391 FHAD1B1AJZ9 1412 aa18.99■□□□□ 0.63
PRDM16-203ENST00000378391 PPM1GO15355 546 aaPredicted RBP18.99■□□□□ 0.63
PRDM16-203ENST00000378391 MYH16Q9H6N6 1097 aa18.98■□□□□ 0.63
PRDM16-203ENST00000378391 NOP58Q9Y2X3 529 aaKnown RBP18.95■□□□□ 0.62
PRDM16-203ENST00000378391 CUX2O14529 1486 aa18.94■□□□□ 0.62
PRDM16-203ENST00000378391 SYNJ1O43426 1573 aa18.94■□□□□ 0.62
PRDM16-203ENST00000378391 ARHGAP35Q9NRY4 1499 aa18.93■□□□□ 0.62
PRDM16-203ENST00000378391 CARMIL1Q5VZK9 1371 aa18.93■□□□□ 0.62
PRDM16-203ENST00000378391 PODXL2Q9NZ53 605 aa18.93■□□□□ 0.62
PRDM16-203ENST00000378391 NPM1P06748 294 aaKnown RBP eCLIP18.93■□□□□ 0.62
PRDM16-203ENST00000378391 DEKP35659 375 aaKnown RBP18.92■□□□□ 0.62
PRDM16-203ENST00000378391 GOLGA6L22H0YM25 854 aa18.91■□□□□ 0.62
PRDM16-203ENST00000378391 HSPA5P11021 654 aaKnown RBP18.89■□□□□ 0.61
PRDM16-203ENST00000378391 SENP3-EIF4A1A0A087X0R7 540 aa18.88■□□□□ 0.61
PRDM16-203ENST00000378391 CDCA8Q53HL2 280 aa18.88■□□□□ 0.61
PRDM16-203ENST00000378391 ATAD2BQ9ULI0 1458 aa18.87■□□□□ 0.61
PRDM16-203ENST00000378391 RRBP1Q9P2E9 1410 aaKnown RBP18.87■□□□□ 0.61
PRDM16-203ENST00000378391 CALRP27797 417 aaKnown RBP18.84■□□□□ 0.61
PRDM16-203ENST00000378391 KNSTRNQ9Y448 316 aa18.83■□□□□ 0.6
PRDM16-203ENST00000378391 ARAP1Q96P48 1450 aa18.82■□□□□ 0.6
PRDM16-203ENST00000378391 EIF4G1Q04637 1599 aaKnown RBP18.82■□□□□ 0.6
PRDM16-203ENST00000378391 CARD11Q9BXL7 1154 aa18.82■□□□□ 0.6
PRDM16-203ENST00000378391 CFAP53Q96M91 514 aa18.81■□□□□ 0.6
PRDM16-203ENST00000378391 CHMP7Q8WUX9 453 aaPredicted RBP18.81■□□□□ 0.6
PRDM16-203ENST00000378391 PLEKHD1A6NEE1 506 aa18.8■□□□□ 0.6
PRDM16-203ENST00000378391 FANCIQ9NVI1 1328 aa18.8■□□□□ 0.6
PRDM16-203ENST00000378391 PRKCSHP14314 528 aaPredicted RBP18.79■□□□□ 0.6
PRDM16-203ENST00000378391 RGL3Q3MIN7 710 aa18.79■□□□□ 0.6
PRDM16-203ENST00000378391 ZBTB4Q9P1Z0 1013 aaPredicted RBP18.77■□□□□ 0.6
PRDM16-203ENST00000378391 ERICH3Q5RHP9 1530 aa18.77■□□□□ 0.6
PRDM16-203ENST00000378391 PTMSP20962 102 aa18.77■□□□□ 0.59
PRDM16-203ENST00000378391 TNNT3P45378 269 aaPredicted RBP18.77■□□□□ 0.59
PRDM16-203ENST00000378391 CFDP1Q9UEE9 299 aaPredicted RBP18.75■□□□□ 0.59
PRDM16-203ENST00000378391 LAS1LQ9Y4W2 734 aaKnown RBP18.74■□□□□ 0.59
PRDM16-203ENST00000378391 A0A0U1RQG5 324 aaPredicted RBP18.73■□□□□ 0.59
PRDM16-203ENST00000378391 FTSJ3Q8IY81 847 aaKnown RBP18.72■□□□□ 0.59
PRDM16-203ENST00000378391 FHOD3Q2V2M9 1422 aa18.71■□□□□ 0.59
PRDM16-203ENST00000378391 PHLDB1Q86UU1 1377 aa18.71■□□□□ 0.58
PRDM16-203ENST00000378391 RGS3P49796 1198 aa18.69■□□□□ 0.58
PRDM16-203ENST00000378391 CASC1Q6TDU7 716 aa18.69■□□□□ 0.58
PRDM16-203ENST00000378391 VSIG10Q8N0Z9 540 aa18.68■□□□□ 0.58
PRDM16-203ENST00000378391 PTMAP06454 111 aaKnown RBP18.68■□□□□ 0.58
PRDM16-203ENST00000378391 WDR97A6NE52 1622 aa18.68■□□□□ 0.58
PRDM16-203ENST00000378391 PRXQ9BXM0 1461 aa18.68■□□□□ 0.58
PRDM16-203ENST00000378391 FOXD1Q16676 465 aa18.67■□□□□ 0.58
PRDM16-203ENST00000378391 FMN1Q68DA7 1419 aa18.67■□□□□ 0.58
PRDM16-203ENST00000378391 LRRC9Q6ZRR7 1453 aa18.67■□□□□ 0.58
PRDM16-203ENST00000378391 CCDC18Q5T9S5 1454 aa18.66■□□□□ 0.58
PRDM16-203ENST00000378391 TOP2BQ02880 1626 aa18.65■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 54.6 ms