RNA–Protein interactions for RNA: ENST00000378169.7

NPHP4-203, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 4,213 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-203ENST00000378169 PLEKHD1A6NEE1 506 aa18.11■□□□□ 0.49
NPHP4-203ENST00000378169 MYT1Q01538 1121 aa18.11■□□□□ 0.49
NPHP4-203ENST00000378169 NPM1P06748 294 aaKnown RBP eCLIP18.11■□□□□ 0.49
NPHP4-203ENST00000378169 VPS8Q8N3P4 1428 aa18.1■□□□□ 0.49
NPHP4-203ENST00000378169 SMARCA2P51531 1590 aa18.1■□□□□ 0.49
NPHP4-203ENST00000378169 RUSC2Q8N2Y8 1516 aa18.1■□□□□ 0.49
NPHP4-203ENST00000378169 CCNB3Q8WWL7 1395 aa18.09■□□□□ 0.49
NPHP4-203ENST00000378169 CFDP1Q9UEE9 299 aaPredicted RBP18.09■□□□□ 0.49
NPHP4-203ENST00000378169 ATAD2BQ9ULI0 1458 aa18.07■□□□□ 0.48
NPHP4-203ENST00000378169 TDRD9Q8NDG6 1382 aaKnown RBP18.06■□□□□ 0.48
NPHP4-203ENST00000378169 EIF4G2P78344 907 aaKnown RBP eCLIP18.05■□□□□ 0.482e-7■■■■■ 44.3
NPHP4-203ENST00000378169 MRS2Q9HD23 443 aa18.04■□□□□ 0.48
NPHP4-203ENST00000378169 RGL3Q3MIN7 710 aa18.03■□□□□ 0.48
NPHP4-203ENST00000378169 SMARCA4P51532 1647 aa18.02■□□□□ 0.48
NPHP4-203ENST00000378169 TMC1Q8TDI8 760 aa18■□□□□ 0.47
NPHP4-203ENST00000378169 SENP3-EIF4A1A0A087X0R7 540 aa18■□□□□ 0.47
NPHP4-203ENST00000378169 FHAD1B1AJZ9 1412 aa17.99■□□□□ 0.47
NPHP4-203ENST00000378169 RAPGEF2Q9Y4G8 1499 aa17.99■□□□□ 0.47
NPHP4-203ENST00000378169 SENP3Q9H4L4 574 aaPredicted RBP17.99■□□□□ 0.47
NPHP4-203ENST00000378169 BCL11AQ9H165 835 aa17.98■□□□□ 0.47
NPHP4-203ENST00000378169 ERCC6Q03468 1493 aa17.98■□□□□ 0.47
NPHP4-203ENST00000378169 IRX6P78412 446 aaPredicted RBP17.97■□□□□ 0.47
NPHP4-203ENST00000378169 PLPPR3Q6T4P5 718 aa17.96■□□□□ 0.47
NPHP4-203ENST00000378169 CADPSQ9ULU8 1353 aa17.96■□□□□ 0.47
NPHP4-203ENST00000378169 CANXP27824 592 aaKnown RBP17.95■□□□□ 0.46
NPHP4-203ENST00000378169 EIF4G1Q04637 1599 aaKnown RBP17.95■□□□□ 0.46
NPHP4-203ENST00000378169 STAG3Q9UJ98 1225 aa17.94■□□□□ 0.46
NPHP4-203ENST00000378169 RTL5Q5HYW3 569 aaPredicted RBP17.93■□□□□ 0.46
NPHP4-203ENST00000378169 ESF1Q9H501 851 aaKnown RBP17.91■□□□□ 0.46
NPHP4-203ENST00000378169 SLC24A1O60721 1099 aa17.87■□□□□ 0.45
NPHP4-203ENST00000378169 FOXD1Q16676 465 aa17.85■□□□□ 0.45
NPHP4-203ENST00000378169 PDS5BQ9NTI5 1447 aa17.85■□□□□ 0.45
NPHP4-203ENST00000378169 NEFMP07197 916 aa17.84■□□□□ 0.45
NPHP4-203ENST00000378169 FHOD3Q2V2M9 1422 aa17.83■□□□□ 0.44
NPHP4-203ENST00000378169 NPM2Q86SE8 214 aaKnown RBP17.83■□□□□ 0.44
NPHP4-203ENST00000378169 RAB3GAP2Q9H2M9 1393 aa17.82■□□□□ 0.44
NPHP4-203ENST00000378169 SETD5Q9C0A6 1442 aa17.82■□□□□ 0.44
NPHP4-203ENST00000378169 CARD11Q9BXL7 1154 aa17.81■□□□□ 0.44
NPHP4-203ENST00000378169 ARHGAP35Q9NRY4 1499 aa17.78■□□□□ 0.44
NPHP4-203ENST00000378169 CCDC136Q96JN2 1154 aa17.77■□□□□ 0.44
NPHP4-203ENST00000378169 WDR43Q15061 677 aaKnown RBP eCLIP17.75■□□□□ 0.43
NPHP4-203ENST00000378169 FMN1Q68DA7 1419 aa17.73■□□□□ 0.43
NPHP4-203ENST00000378169 ZBTB47Q9UFB7 747 aaPredicted RBP17.72■□□□□ 0.43
NPHP4-203ENST00000378169 ANP32AP39687 249 aaKnown RBP17.72■□□□□ 0.43
NPHP4-203ENST00000378169 SUPT16HQ9Y5B9 1047 aaKnown RBP17.72■□□□□ 0.43
NPHP4-203ENST00000378169 DCAF11Q8TEB1 546 aa17.71■□□□□ 0.43
NPHP4-203ENST00000378169 FANCD2Q9BXW9 1451 aa17.7■□□□□ 0.42
NPHP4-203ENST00000378169 TIMELESSQ9UNS1 1208 aa17.68■□□□□ 0.42
NPHP4-203ENST00000378169 PKD2Q13563 968 aa17.68■□□□□ 0.42
NPHP4-203ENST00000378169 IGF1RP08069 1367 aa17.68■□□□□ 0.42
NPHP4-203ENST00000378169 MPHOSPH9Q99550 1183 aa17.66■□□□□ 0.42
NPHP4-203ENST00000378169 HSPA5P11021 654 aaKnown RBP17.65■□□□□ 0.42
NPHP4-203ENST00000378169 BICRAQ9NZM4 1560 aa17.63■□□□□ 0.41
NPHP4-203ENST00000378169 PPP1R15AO75807 674 aaPredicted RBP17.63■□□□□ 0.41
NPHP4-203ENST00000378169 DHX57Q6P158 1386 aaKnown RBP17.61■□□□□ 0.41
NPHP4-203ENST00000378169 RAD54L2Q9Y4B4 1467 aa17.61■□□□□ 0.41
NPHP4-203ENST00000378169 FGD5Q6ZNL6 1462 aa17.6■□□□□ 0.41
NPHP4-203ENST00000378169 JPH4Q96JJ6 628 aa17.6■□□□□ 0.41
NPHP4-203ENST00000378169 KNSTRNQ9Y448 316 aa17.6■□□□□ 0.41
NPHP4-203ENST00000378169 UNC13AQ9UPW8 1703 aa17.6■□□□□ 0.41
NPHP4-203ENST00000378169 NCAPD3P42695 1498 aa17.59■□□□□ 0.41
NPHP4-203ENST00000378169 CARMIL2Q6F5E8 1435 aa17.59■□□□□ 0.41
NPHP4-203ENST00000378169 CC2D1BQ5T0F9 858 aaKnown RBP17.58■□□□□ 0.4
NPHP4-203ENST00000378169 L3MBTL2Q969R5 705 aa17.57■□□□□ 0.4
NPHP4-203ENST00000378169 HNRNPMP52272 730 aaKnown RBP eCLIP17.56■□□□□ 0.49e-7■■■■■ 28.6
NPHP4-203ENST00000378169 NUP155O75694 1391 aa17.55■□□□□ 0.4
NPHP4-203ENST00000378169 GOLGA6L2Q8N9W4 650 aaPredicted RBP17.54■□□□□ 0.4
NPHP4-203ENST00000378169 TNNT2P45379 298 aaPredicted RBP17.53■□□□□ 0.4
NPHP4-203ENST00000378169 NEUROD2Q15784 382 aa17.53■□□□□ 0.4
NPHP4-203ENST00000378169 PLEKHG5O94827 1062 aa17.53■□□□□ 0.4
NPHP4-203ENST00000378169 CDCA8Q53HL2 280 aa17.51■□□□□ 0.39
NPHP4-203ENST00000378169 GGT6Q6P531 493 aa17.5■□□□□ 0.39
NPHP4-203ENST00000378169 SYNJ1O43426 1573 aa17.5■□□□□ 0.39
NPHP4-203ENST00000378169 ARID4BQ4LE39 1312 aaPredicted RBP17.49■□□□□ 0.39
NPHP4-203ENST00000378169 PPM1GO15355 546 aaPredicted RBP17.49■□□□□ 0.39
NPHP4-203ENST00000378169 KIF21BO75037 1637 aa17.47■□□□□ 0.39
NPHP4-203ENST00000378169 CCER2I3L3R5 266 aa17.47■□□□□ 0.39
NPHP4-203ENST00000378169 NBR1Q14596 966 aa17.46■□□□□ 0.39
NPHP4-203ENST00000378169 ANKRD30AQ9BXX3 1397 aa17.46■□□□□ 0.38
NPHP4-203ENST00000378169 EFCAB2Q5VUJ9 269 aa17.45■□□□□ 0.38
NPHP4-203ENST00000378169 GAPVD1Q14C86 1478 aa17.45■□□□□ 0.38
NPHP4-203ENST00000378169 B4GALNT3Q6L9W6 998 aa17.45■□□□□ 0.38
NPHP4-203ENST00000378169 TMF1P82094 1093 aa17.45■□□□□ 0.38
NPHP4-203ENST00000378169 MLECQ14165 292 aa17.44■□□□□ 0.38
NPHP4-203ENST00000378169 SAFB2Q14151 953 aaKnown RBP eCLIP17.44■□□□□ 0.38
NPHP4-203ENST00000378169 PHLDB1Q86UU1 1377 aa17.43■□□□□ 0.38
NPHP4-203ENST00000378169 ARAP1Q96P48 1450 aa17.43■□□□□ 0.38
NPHP4-203ENST00000378169 CFTRP13569 1480 aa17.42■□□□□ 0.38
NPHP4-203ENST00000378169 CCDC18Q5T9S5 1454 aa17.42■□□□□ 0.38
NPHP4-203ENST00000378169 NESP48681 1621 aa17.41■□□□□ 0.38
NPHP4-203ENST00000378169 AQRO60306 1485 aaKnown RBP eCLIP17.41■□□□□ 0.382e-7■■■■■ 54.1
NPHP4-203ENST00000378169 ZNF644Q9H582 1327 aaPredicted RBP17.41■□□□□ 0.38
NPHP4-203ENST00000378169 POGKQ9P215 609 aa17.41■□□□□ 0.38
NPHP4-203ENST00000378169 UPF2Q9HAU5 1272 aaKnown RBP17.4■□□□□ 0.38
NPHP4-203ENST00000378169 C14orf37Q86TY3 774 aa17.39■□□□□ 0.37
NPHP4-203ENST00000378169 KIF3BO15066 747 aa17.39■□□□□ 0.37
NPHP4-203ENST00000378169 CFAP53Q96M91 514 aa17.39■□□□□ 0.37
NPHP4-203ENST00000378169 PPP4R2Q9NY27 417 aa17.37■□□□□ 0.37
NPHP4-203ENST00000378169 ZBTB7CA1YPR0 619 aa17.36■□□□□ 0.37
NPHP4-203ENST00000378169 KANK1Q14678 1352 aa17.36■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms