RNA–Protein interactions for RNA: ENST00000377348.6

VPS28-202, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS28, Length 1,097 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-202ENST00000377348 ERCC6L2Q5T890 1561 aa22.38■■□□□ 1.17
VPS28-202ENST00000377348 CYB5RLQ6IPT4 315 aa22.38■■□□□ 1.17
VPS28-202ENST00000377348 SHROOM2Q13796 1616 aa22.38■■□□□ 1.17
VPS28-202ENST00000377348 KIAA0586Q9BVV6 1533 aa22.37■■□□□ 1.17
VPS28-202ENST00000377348 CSRNP3Q8WYN3 585 aa22.37■■□□□ 1.17
VPS28-202ENST00000377348 PRXQ9BXM0 1461 aa22.36■■□□□ 1.17
VPS28-202ENST00000377348 JPH4Q96JJ6 628 aa22.36■■□□□ 1.17
VPS28-202ENST00000377348 EEA1Q15075 1411 aa22.34■■□□□ 1.17
VPS28-202ENST00000377348 PRG4Q92954 1404 aaPredicted RBP22.32■■□□□ 1.16
VPS28-202ENST00000377348 IQGAP2Q13576 1575 aa22.25■■□□□ 1.15
VPS28-202ENST00000377348 CTTNBP2Q8WZ74 1663 aa22.17■■□□□ 1.14
VPS28-202ENST00000377348 EHMT2Q96KQ7 1210 aa22.14■■□□□ 1.13
VPS28-202ENST00000377348 KIF21BO75037 1637 aa22.13■■□□□ 1.13
VPS28-202ENST00000377348 UGGT2Q9NYU1 1516 aa22.13■■□□□ 1.13
VPS28-202ENST00000377348 DISP1Q96F81 1524 aa22.12■■□□□ 1.13
VPS28-202ENST00000377348 CARMIL2Q6F5E8 1435 aa22.12■■□□□ 1.13
VPS28-202ENST00000377348 TTBK1Q5TCY1 1321 aaPredicted RBP22.11■■□□□ 1.13
VPS28-202ENST00000377348 TNIKQ9UKE5 1360 aa22.06■■□□□ 1.12
VPS28-202ENST00000377348 PTPRGP23470 1445 aa22.06■■□□□ 1.12
VPS28-202ENST00000377348 KIAA0556O60303 1618 aa22.05■■□□□ 1.12
VPS28-202ENST00000377348 GOLGA3Q08378 1498 aa22.03■■□□□ 1.12
VPS28-202ENST00000377348 RANGAP1P46060 587 aaPredicted RBP22.01■■□□□ 1.11
VPS28-202ENST00000377348 UBTFP17480 764 aaKnown RBP21.99■■□□□ 1.11
VPS28-202ENST00000377348 P3H3Q8IVL6 736 aa21.97■■□□□ 1.11
VPS28-202ENST00000377348 ADCY10Q96PN6 1610 aa21.97■■□□□ 1.11
VPS28-202ENST00000377348 SAMD9Q5K651 1589 aa21.91■■□□□ 1.1
VPS28-202ENST00000377348 UACAQ9BZF9 1416 aa21.9■■□□□ 1.1
VPS28-202ENST00000377348 TRHP20396 242 aaPredicted RBP21.9■■□□□ 1.1
VPS28-202ENST00000377348 NPM1P06748 294 aaKnown RBP eCLIP21.88■■□□□ 1.09
VPS28-202ENST00000377348 PLB1Q6P1J6 1458 aa21.86■■□□□ 1.09
VPS28-202ENST00000377348 ABCC2Q92887 1545 aa21.85■■□□□ 1.09
VPS28-202ENST00000377348 UHRF1BP1LA0JNW5 1464 aa21.85■■□□□ 1.09
VPS28-202ENST00000377348 FHOD3Q2V2M9 1422 aa21.85■■□□□ 1.09
VPS28-202ENST00000377348 ABCA8O94911 1581 aa21.81■■□□□ 1.08
VPS28-202ENST00000377348 EFCAB5A4FU69 1503 aa21.8■■□□□ 1.08
VPS28-202ENST00000377348 MAPKBP1O60336 1514 aa21.79■■□□□ 1.08
VPS28-202ENST00000377348 ARHGAP35Q9NRY4 1499 aa21.77■■□□□ 1.07
VPS28-202ENST00000377348 KDM5BQ9UGL1 1544 aa21.76■■□□□ 1.07
VPS28-202ENST00000377348 ZCCHC11Q5TAX3 1644 aaKnown RBP21.73■■□□□ 1.07
VPS28-202ENST00000377348 ARID3CA6NKF2 412 aa21.73■■□□□ 1.07
VPS28-202ENST00000377348 ASXL2Q76L83 1435 aa21.72■■□□□ 1.07
VPS28-202ENST00000377348 LOC105371045A0A1W2PR82 267 aa21.71■■□□□ 1.07
VPS28-202ENST00000377348 RAPGEF6Q8TEU7 1601 aa21.7■■□□□ 1.06
VPS28-202ENST00000377348 ABCC10Q5T3U5 1492 aa21.7■■□□□ 1.06
VPS28-202ENST00000377348 FAM69CQ0P6D2 419 aa21.68■■□□□ 1.06
VPS28-202ENST00000377348 KIF13AQ9H1H9 1805 aa21.67■■□□□ 1.06
VPS28-202ENST00000377348 DIP2BQ9P265 1576 aa21.67■■□□□ 1.06
VPS28-202ENST00000377348 ATP10BO94823 1461 aa21.64■■□□□ 1.06
VPS28-202ENST00000377348 NUP153P49790 1475 aaKnown RBP21.64■■□□□ 1.06
VPS28-202ENST00000377348 CLIP1P30622 1438 aa21.64■■□□□ 1.06
VPS28-202ENST00000377348 FMN1Q68DA7 1419 aa21.62■■□□□ 1.05
VPS28-202ENST00000377348 WDR7Q9Y4E6 1490 aa21.59■■□□□ 1.05
VPS28-202ENST00000377348 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.59■■□□□ 1.05
VPS28-202ENST00000377348 HNRNPUL2Q1KMD3 747 aaKnown RBP21.59■■□□□ 1.05
VPS28-202ENST00000377348 EPRSP07814 1512 aaKnown RBP21.58■■□□□ 1.04
VPS28-202ENST00000377348 CEP162Q5TB80 1403 aa21.57■■□□□ 1.04
VPS28-202ENST00000377348 ATP1B4Q9UN42 357 aaPredicted RBP21.57■■□□□ 1.04
VPS28-202ENST00000377348 KCNH8Q96L42 1107 aa21.55■■□□□ 1.04
VPS28-202ENST00000377348 GLI2P10070 1586 aa21.53■■□□□ 1.04
VPS28-202ENST00000377348 CDK13Q14004 1512 aaKnown RBP21.52■■□□□ 1.04
VPS28-202ENST00000377348 HECW1Q76N89 1606 aa21.51■■□□□ 1.03
VPS28-202ENST00000377348 PCF11O94913 1555 aaKnown RBP21.49■■□□□ 1.03
VPS28-202ENST00000377348 TSPOAP1O95153 1857 aa21.49■■□□□ 1.03
VPS28-202ENST00000377348 CASKIN1Q8WXD9 1431 aa21.47■■□□□ 1.03
VPS28-202ENST00000377348 MAP3K4Q9Y6R4 1608 aa21.45■■□□□ 1.02
VPS28-202ENST00000377348 PLEKHD1A6NEE1 506 aa21.44■■□□□ 1.02
VPS28-202ENST00000377348 LRRIQ1Q96JM4 1722 aa21.43■■□□□ 1.02
VPS28-202ENST00000377348 PPRC1Q5VV67 1664 aaKnown RBP21.43■■□□□ 1.02
VPS28-202ENST00000377348 FYCO1Q9BQS8 1478 aa21.41■■□□□ 1.02
VPS28-202ENST00000377348 CD109Q6YHK3 1445 aa21.4■■□□□ 1.02
VPS28-202ENST00000377348 CFAP43Q8NDM7 1665 aa21.38■■□□□ 1.01
VPS28-202ENST00000377348 CCDC18Q5T9S5 1454 aa21.36■■□□□ 1.01
VPS28-202ENST00000377348 ABCA9Q8IUA7 1624 aa21.36■■□□□ 1.01
VPS28-202ENST00000377348 CDK11AQ9UQ88 783 aaPredicted RBP21.34■■□□□ 1.01
VPS28-202ENST00000377348 TEX14Q8IWB6 1497 aa21.33■■□□□ 1.01
VPS28-202ENST00000377348 MAGI3Q5TCQ9 1506 aa21.33■■□□□ 1
VPS28-202ENST00000377348 TROQ12816 1431 aaPredicted RBP21.31■■□□□ 1
VPS28-202ENST00000377348 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP21.31■■□□□ 17e-7■■□□□ 14.3
VPS28-202ENST00000377348 KDM6BO15054 1643 aa21.3■■□□□ 1
VPS28-202ENST00000377348 TTC37Q6PGP7 1564 aa21.29■■□□□ 1
VPS28-202ENST00000377348 VPS8Q8N3P4 1428 aa21.29■■□□□ 1
VPS28-202ENST00000377348 KIF14Q15058 1648 aa21.28■■□□□ 1
VPS28-202ENST00000377348 COL17A1Q9UMD9 1497 aaPredicted RBP21.26■□□□□ 0.99
VPS28-202ENST00000377348 MTUS2Q5JR59 1369 aa21.18■□□□□ 0.98
VPS28-202ENST00000377348 PLCH2O75038 1416 aa21.18■□□□□ 0.98
VPS28-202ENST00000377348 FANCAO15360 1455 aa21.17■□□□□ 0.98
VPS28-202ENST00000377348 NEO1Q92859 1461 aa21.17■□□□□ 0.98
VPS28-202ENST00000377348 TIAM1Q13009 1591 aa21.14■□□□□ 0.98
VPS28-202ENST00000377348 ARAP3Q8WWN8 1544 aa21.14■□□□□ 0.98
VPS28-202ENST00000377348 MYO5CQ9NQX4 1742 aa21.14■□□□□ 0.97
VPS28-202ENST00000377348 AKNAQ7Z591 1439 aa21.13■□□□□ 0.97
VPS28-202ENST00000377348 PHLDB1Q86UU1 1377 aa21.12■□□□□ 0.97
VPS28-202ENST00000377348 EHBP1L1Q8N3D4 1523 aa21.12■□□□□ 0.97
VPS28-202ENST00000377348 RAPGEF3O95398 923 aa21.11■□□□□ 0.97
VPS28-202ENST00000377348 CFAP74Q9C0B2 1584 aa21.1■□□□□ 0.97
VPS28-202ENST00000377348 ARHGAP5Q13017 1502 aa21.1■□□□□ 0.97
VPS28-202ENST00000377348 EFCAB2Q5VUJ9 269 aa21.09■□□□□ 0.97
VPS28-202ENST00000377348 PREX2Q70Z35 1606 aa21.07■□□□□ 0.96
VPS28-202ENST00000377348 CDC42BPBQ9Y5S2 1711 aa21.07■□□□□ 0.96
VPS28-202ENST00000377348 KANK4Q5T7N3 995 aaPredicted RBP21.07■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms