RNA–Protein interactions for RNA: ENST00000377340.6

CRNKL1-202, Transcript of crooked neck pre-mRNA splicing factor 1, humanhuman

TSL 1 (best) BASIC

Gene CRNKL1, Length 4,406 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CRNKL1-202ENST00000377340 JPH4Q96JJ6 628 aa12.06□□□□□ -0.48
CRNKL1-202ENST00000377340 MLECQ14165 292 aa12.04□□□□□ -0.48
CRNKL1-202ENST00000377340 PELP1Q8IZL8 1130 aaKnown RBP12.03□□□□□ -0.48
CRNKL1-202ENST00000377340 KDM2AQ9Y2K7 1162 aa12□□□□□ -0.49
CRNKL1-202ENST00000377340 MYT1Q01538 1121 aa11.99□□□□□ -0.49
CRNKL1-202ENST00000377340 RAD54L2Q9Y4B4 1467 aa11.99□□□□□ -0.49
CRNKL1-202ENST00000377340 TNIKQ9UKE5 1360 aa11.98□□□□□ -0.49
CRNKL1-202ENST00000377340 BICRAQ9NZM4 1560 aa11.98□□□□□ -0.49
CRNKL1-202ENST00000377340 AQRO60306 1485 aaKnown RBP eCLIP11.97□□□□□ -0.497e-7■■■■□ 20
CRNKL1-202ENST00000377340 CARMIL2Q6F5E8 1435 aa11.96□□□□□ -0.49
CRNKL1-202ENST00000377340 RGL3Q3MIN7 710 aa11.95□□□□□ -0.5
CRNKL1-202ENST00000377340 PLEKHG5O94827 1062 aa11.94□□□□□ -0.5
CRNKL1-202ENST00000377340 CENPBP07199 599 aaPredicted RBP11.93□□□□□ -0.5
CRNKL1-202ENST00000377340 RUSC2Q8N2Y8 1516 aa11.92□□□□□ -0.5
CRNKL1-202ENST00000377340 FGD5Q6ZNL6 1462 aa11.92□□□□□ -0.5
CRNKL1-202ENST00000377340 PPP1R15AO75807 674 aaPredicted RBP11.91□□□□□ -0.5
CRNKL1-202ENST00000377340 GGT6Q6P531 493 aa11.9□□□□□ -0.5
CRNKL1-202ENST00000377340 CCNB3Q8WWL7 1395 aa11.9□□□□□ -0.5
CRNKL1-202ENST00000377340 KANK4Q5T7N3 995 aaPredicted RBP11.88□□□□□ -0.51
CRNKL1-202ENST00000377340 TONSLQ96HA7 1378 aa11.88□□□□□ -0.51
CRNKL1-202ENST00000377340 GAPVD1Q14C86 1478 aa11.87□□□□□ -0.51
CRNKL1-202ENST00000377340 SLC24A1O60721 1099 aa11.87□□□□□ -0.51
CRNKL1-202ENST00000377340 C14orf37Q86TY3 774 aa11.87□□□□□ -0.51
CRNKL1-202ENST00000377340 FHOD3Q2V2M9 1422 aa11.86□□□□□ -0.51
CRNKL1-202ENST00000377340 RAPGEF2Q9Y4G8 1499 aa11.86□□□□□ -0.51
CRNKL1-202ENST00000377340 FHAD1B1AJZ9 1412 aa11.85□□□□□ -0.51
CRNKL1-202ENST00000377340 IGF1RP08069 1367 aa11.84□□□□□ -0.51
CRNKL1-202ENST00000377340 CFTRP13569 1480 aa11.84□□□□□ -0.51
CRNKL1-202ENST00000377340 PTPRGP23470 1445 aa11.84□□□□□ -0.51
CRNKL1-202ENST00000377340 SCAF1Q9H7N4 1312 aaKnown RBP11.84□□□□□ -0.51
CRNKL1-202ENST00000377340 EFCAB2Q5VUJ9 269 aa11.83□□□□□ -0.52
CRNKL1-202ENST00000377340 NEFLP07196 543 aa11.83□□□□□ -0.52
CRNKL1-202ENST00000377340 DIEXFQ68CQ4 756 aaKnown RBP11.83□□□□□ -0.52
CRNKL1-202ENST00000377340 HIRIP3Q9BW71 556 aaPredicted RBP11.83□□□□□ -0.52
CRNKL1-202ENST00000377340 HNRNPMP52272 730 aaKnown RBP eCLIP11.8□□□□□ -0.52
CRNKL1-202ENST00000377340 FAM69CQ0P6D2 419 aa11.8□□□□□ -0.52
CRNKL1-202ENST00000377340 MRC2Q9UBG0 1479 aa11.78□□□□□ -0.52
CRNKL1-202ENST00000377340 HMGXB3Q12766 1538 aa11.76□□□□□ -0.53
CRNKL1-202ENST00000377340 FMN1Q68DA7 1419 aa11.76□□□□□ -0.53
CRNKL1-202ENST00000377340 KIF3BO15066 747 aa11.74□□□□□ -0.53
CRNKL1-202ENST00000377340 ANP32CO43423 234 aa11.74□□□□□ -0.53
CRNKL1-202ENST00000377340 TOPBP1Q92547 1522 aa11.73□□□□□ -0.53
CRNKL1-202ENST00000377340 ZBTB7CA1YPR0 619 aa11.72□□□□□ -0.53
CRNKL1-202ENST00000377340 VPS8Q8N3P4 1428 aa11.72□□□□□ -0.53
CRNKL1-202ENST00000377340 FOXD1Q16676 465 aa11.72□□□□□ -0.53
CRNKL1-202ENST00000377340 SIN3AQ96ST3 1273 aa11.72□□□□□ -0.53
CRNKL1-202ENST00000377340 GRIN2BQ13224 1484 aa11.71□□□□□ -0.54
CRNKL1-202ENST00000377340 UNC13AQ9UPW8 1703 aa11.7□□□□□ -0.54
CRNKL1-202ENST00000377340 ZNF316A6NFI3 1004 aaPredicted RBP11.7□□□□□ -0.54
CRNKL1-202ENST00000377340 DDX10Q13206 875 aaKnown RBP11.7□□□□□ -0.54
CRNKL1-202ENST00000377340 POLA1P09884 1462 aaPredicted RBP11.7□□□□□ -0.54
CRNKL1-202ENST00000377340 TMC1Q8TDI8 760 aa11.7□□□□□ -0.54
CRNKL1-202ENST00000377340 SPAG9O60271 1321 aaKnown RBP11.69□□□□□ -0.54
CRNKL1-202ENST00000377340 A0A0G2JS52 829 aa11.69□□□□□ -0.54
CRNKL1-202ENST00000377340 LMOD2Q6P5Q4 547 aa11.69□□□□□ -0.54
CRNKL1-202ENST00000377340 NEFMP07197 916 aa11.68□□□□□ -0.54
CRNKL1-202ENST00000377340 BCL11AQ9H165 835 aa11.67□□□□□ -0.54
CRNKL1-202ENST00000377340 IFT140Q96RY7 1462 aa11.67□□□□□ -0.54
CRNKL1-202ENST00000377340 SAFB2Q14151 953 aaKnown RBP eCLIP11.66□□□□□ -0.54
CRNKL1-202ENST00000377340 PRG4Q92954 1404 aaPredicted RBP11.66□□□□□ -0.54
CRNKL1-202ENST00000377340 PKD2Q13563 968 aa11.65□□□□□ -0.54
CRNKL1-202ENST00000377340 NUTM2DQ5VT03 806 aaPredicted RBP11.64□□□□□ -0.55
CRNKL1-202ENST00000377340 DCAF11Q8TEB1 546 aa11.64□□□□□ -0.55
CRNKL1-202ENST00000377340 WASHC2CQ9Y4E1 1318 aa11.64□□□□□ -0.55
CRNKL1-202ENST00000377340 HAP1P54257 671 aaPredicted RBP11.64□□□□□ -0.55
CRNKL1-202ENST00000377340 POGKQ9P215 609 aa11.64□□□□□ -0.55
CRNKL1-202ENST00000377340 SALL2Q9Y467 1007 aaPredicted RBP11.64□□□□□ -0.55
CRNKL1-202ENST00000377340 KANK1Q14678 1352 aa11.64□□□□□ -0.55
CRNKL1-202ENST00000377340 ARHGAP35Q9NRY4 1499 aa11.64□□□□□ -0.55
CRNKL1-202ENST00000377340 CUX1P39880 1505 aa11.63□□□□□ -0.55
CRNKL1-202ENST00000377340 SNAPC4Q5SXM2 1469 aa11.63□□□□□ -0.55
CRNKL1-202ENST00000377340 SYNJ1O43426 1573 aa11.63□□□□□ -0.55
CRNKL1-202ENST00000377340 STK26Q9P289 416 aa11.62□□□□□ -0.55
CRNKL1-202ENST00000377340 NUP155O75694 1391 aa11.61□□□□□ -0.55
CRNKL1-202ENST00000377340 ZNF644Q9H582 1327 aaPredicted RBP11.61□□□□□ -0.55
CRNKL1-202ENST00000377340 CARD11Q9BXL7 1154 aa11.61□□□□□ -0.55
CRNKL1-202ENST00000377340 LAMC3Q9Y6N6 1575 aa11.6□□□□□ -0.55
CRNKL1-202ENST00000377340 EIF4G2P78344 907 aaKnown RBP eCLIP11.59□□□□□ -0.55
CRNKL1-202ENST00000377340 AFAP1Q8N556 730 aa11.59□□□□□ -0.55
CRNKL1-202ENST00000377340 AEBP2Q6ZN18 517 aaPredicted RBP11.58□□□□□ -0.56
CRNKL1-202ENST00000377340 ZNF608Q9ULD9 1512 aaPredicted RBP11.58□□□□□ -0.56
CRNKL1-202ENST00000377340 PPM1GO15355 546 aaPredicted RBP11.58□□□□□ -0.56
CRNKL1-202ENST00000377340 CCDC18Q5T9S5 1454 aa11.58□□□□□ -0.56
CRNKL1-202ENST00000377340 ANKRD30AQ9BXX3 1397 aa11.56□□□□□ -0.56
CRNKL1-202ENST00000377340 SENP3-EIF4A1A0A087X0R7 540 aa11.56□□□□□ -0.56
CRNKL1-202ENST00000377340 FAM9BQ8IZU0 186 aa11.56□□□□□ -0.56
CRNKL1-202ENST00000377340 HDGFP51858 240 aaKnown RBP11.56□□□□□ -0.56
CRNKL1-202ENST00000377340 SOX12O15370 315 aa11.55□□□□□ -0.56
CRNKL1-202ENST00000377340 URB2Q14146 1524 aaKnown RBP11.55□□□□□ -0.56
CRNKL1-202ENST00000377340 RSPH4AQ5TD94 716 aa11.55□□□□□ -0.56
CRNKL1-202ENST00000377340 DNMBPQ6XZF7 1577 aa11.54□□□□□ -0.56
CRNKL1-202ENST00000377340 MPHOSPH9Q99550 1183 aa11.54□□□□□ -0.56
CRNKL1-202ENST00000377340 RAPGEF3O95398 923 aa11.53□□□□□ -0.56
CRNKL1-202ENST00000377340 TNNT2P45379 298 aaPredicted RBP11.52□□□□□ -0.57
CRNKL1-202ENST00000377340 NUTM2FA1L443 756 aa11.51□□□□□ -0.57
CRNKL1-202ENST00000377340 CANXP27824 592 aaKnown RBP11.5□□□□□ -0.57
CRNKL1-202ENST00000377340 SRPK2P78362 688 aaKnown RBP11.5□□□□□ -0.57
CRNKL1-202ENST00000377340 PRDM2Q13029 1718 aa11.5□□□□□ -0.57
CRNKL1-202ENST00000377340 CLSPNQ9HAW4 1339 aa11.5□□□□□ -0.57
CRNKL1-202ENST00000377340 SETD5Q9C0A6 1442 aa11.49□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms