RNA–Protein interactions for RNA: ENST00000375740.7

MSH5-202, Transcript of mutS homolog 5, humanhuman

TSL 1 (best) BASIC

Gene MSH5, Length 2,669 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-202ENST00000375740 P3H3Q8IVL6 736 aa20.89■□□□□ 0.93
MSH5-202ENST00000375740 ABCA5Q8WWZ7 1642 aa20.87■□□□□ 0.93
MSH5-202ENST00000375740 GAPVD1Q14C86 1478 aa20.86■□□□□ 0.93
MSH5-202ENST00000375740 RRBP1Q9P2E9 1410 aaKnown RBP20.85■□□□□ 0.93
MSH5-202ENST00000375740 MAP3K1Q13233 1512 aa20.83■□□□□ 0.93
MSH5-202ENST00000375740 TIAM1Q13009 1591 aa20.83■□□□□ 0.93
MSH5-202ENST00000375740 CTTNBP2Q8WZ74 1663 aa20.83■□□□□ 0.92
MSH5-202ENST00000375740 FHAD1B1AJZ9 1412 aa20.82■□□□□ 0.92
MSH5-202ENST00000375740 TARBP1Q13395 1621 aaKnown RBP20.8■□□□□ 0.92
MSH5-202ENST00000375740 FHOD3Q2V2M9 1422 aa20.79■□□□□ 0.92
MSH5-202ENST00000375740 EFCAB5A4FU69 1503 aa20.78■□□□□ 0.92
MSH5-202ENST00000375740 CCNB3Q8WWL7 1395 aa20.77■□□□□ 0.92
MSH5-202ENST00000375740 PCF11O94913 1555 aaKnown RBP20.76■□□□□ 0.91
MSH5-202ENST00000375740 ATP1B4Q9UN42 357 aaPredicted RBP20.76■□□□□ 0.91
MSH5-202ENST00000375740 LRRC9Q6ZRR7 1453 aa20.75■□□□□ 0.91
MSH5-202ENST00000375740 DIEXFQ68CQ4 756 aaKnown RBP20.74■□□□□ 0.91
MSH5-202ENST00000375740 MRC2Q9UBG0 1479 aa20.73■□□□□ 0.91
MSH5-202ENST00000375740 CENPBP07199 599 aaPredicted RBP20.72■□□□□ 0.91
MSH5-202ENST00000375740 CFAP43Q8NDM7 1665 aa20.7■□□□□ 0.9
MSH5-202ENST00000375740 CASKIN1Q8WXD9 1431 aa20.69■□□□□ 0.9
MSH5-202ENST00000375740 FYCO1Q9BQS8 1478 aa20.69■□□□□ 0.9
MSH5-202ENST00000375740 ITGAEP38570 1179 aa20.68■□□□□ 0.9
MSH5-202ENST00000375740 AQRO60306 1485 aaKnown RBP eCLIP20.68■□□□□ 0.92e-8■■■■■ 33.7
MSH5-202ENST00000375740 DHX57Q6P158 1386 aaKnown RBP20.66■□□□□ 0.9
MSH5-202ENST00000375740 PBRM1Q86U86 1689 aa20.65■□□□□ 0.9
MSH5-202ENST00000375740 PHLDB1Q86UU1 1377 aa20.65■□□□□ 0.9
MSH5-202ENST00000375740 FMN1Q68DA7 1419 aa20.65■□□□□ 0.9
MSH5-202ENST00000375740 SAMD9Q5K651 1589 aa20.64■□□□□ 0.89
MSH5-202ENST00000375740 ZNF316A6NFI3 1004 aaPredicted RBP20.62■□□□□ 0.89
MSH5-202ENST00000375740 CLSPNQ9HAW4 1339 aa20.6■□□□□ 0.89
MSH5-202ENST00000375740 SNAPC4Q5SXM2 1469 aa20.59■□□□□ 0.89
MSH5-202ENST00000375740 WDR62O43379 1518 aa20.57■□□□□ 0.88
MSH5-202ENST00000375740 GRIN2BQ13224 1484 aa20.57■□□□□ 0.88
MSH5-202ENST00000375740 IFT140Q96RY7 1462 aa20.57■□□□□ 0.88
MSH5-202ENST00000375740 FAM50AQ14320 339 aaKnown RBP20.56■□□□□ 0.88
MSH5-202ENST00000375740 ADAMTS12P58397 1594 aa20.56■□□□□ 0.88
MSH5-202ENST00000375740 ZNF608Q9ULD9 1512 aaPredicted RBP20.55■□□□□ 0.88
MSH5-202ENST00000375740 RAB3GAP2Q9H2M9 1393 aa20.51■□□□□ 0.87
MSH5-202ENST00000375740 LRRIQ1Q96JM4 1722 aa20.51■□□□□ 0.87
MSH5-202ENST00000375740 YTHDC1Q96MU7 727 aaKnown RBP20.49■□□□□ 0.87
MSH5-202ENST00000375740 ERCC6Q03468 1493 aa20.49■□□□□ 0.87
MSH5-202ENST00000375740 IQGAP2Q13576 1575 aa20.48■□□□□ 0.87
MSH5-202ENST00000375740 MTUS2Q5JR59 1369 aa20.48■□□□□ 0.87
MSH5-202ENST00000375740 SETD5Q9C0A6 1442 aa20.48■□□□□ 0.87
MSH5-202ENST00000375740 THOC2Q8NI27 1593 aaKnown RBP20.44■□□□□ 0.86
MSH5-202ENST00000375740 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP20.44■□□□□ 0.86
MSH5-202ENST00000375740 FGD6Q6ZV73 1430 aa20.41■□□□□ 0.86
MSH5-202ENST00000375740 EIF4G3O43432 1585 aaKnown RBP20.4■□□□□ 0.86
MSH5-202ENST00000375740 NCOA2Q15596 1464 aa20.38■□□□□ 0.85
MSH5-202ENST00000375740 UGGT2Q9NYU1 1516 aa20.38■□□□□ 0.85
MSH5-202ENST00000375740 CCDC18Q5T9S5 1454 aa20.36■□□□□ 0.85
MSH5-202ENST00000375740 SUPT6HQ7KZ85 1726 aaKnown RBP20.36■□□□□ 0.85
MSH5-202ENST00000375740 EHBP1L1Q8N3D4 1523 aa20.36■□□□□ 0.85
MSH5-202ENST00000375740 KIAA0586Q9BVV6 1533 aa20.36■□□□□ 0.85
MSH5-202ENST00000375740 MAPKBP1O60336 1514 aa20.35■□□□□ 0.85
MSH5-202ENST00000375740 HECW1Q76N89 1606 aa20.34■□□□□ 0.85
MSH5-202ENST00000375740 MAGI3Q5TCQ9 1506 aa20.34■□□□□ 0.85
MSH5-202ENST00000375740 GRIN2AQ12879 1464 aa20.34■□□□□ 0.85
MSH5-202ENST00000375740 MYOM3Q5VTT5 1437 aa20.33■□□□□ 0.85
MSH5-202ENST00000375740 EPRSP07814 1512 aaKnown RBP20.32■□□□□ 0.84
MSH5-202ENST00000375740 DISP1Q96F81 1524 aa20.29■□□□□ 0.84
MSH5-202ENST00000375740 ARHGEF11O15085 1522 aa20.28■□□□□ 0.84
MSH5-202ENST00000375740 MAGI1Q96QZ7 1491 aaPredicted RBP20.28■□□□□ 0.84
MSH5-202ENST00000375740 PTPRKQ15262 1439 aa20.28■□□□□ 0.84
MSH5-202ENST00000375740 CHMP7Q8WUX9 453 aaPredicted RBP20.28■□□□□ 0.84
MSH5-202ENST00000375740 ARID3CA6NKF2 412 aa20.28■□□□□ 0.84
MSH5-202ENST00000375740 CDK13Q14004 1512 aaKnown RBP20.27■□□□□ 0.84
MSH5-202ENST00000375740 MIER1Q8N108 512 aa20.27■□□□□ 0.84
MSH5-202ENST00000375740 KIAA0556O60303 1618 aa20.27■□□□□ 0.84
MSH5-202ENST00000375740 PTPN23Q9H3S7 1636 aa20.24■□□□□ 0.83
MSH5-202ENST00000375740 SYNJ2O15056 1496 aa20.24■□□□□ 0.83
MSH5-202ENST00000375740 FBLN2P98095 1184 aa20.24■□□□□ 0.83
MSH5-202ENST00000375740 SIN3AQ96ST3 1273 aa20.23■□□□□ 0.83
MSH5-202ENST00000375740 CEP170Q5SW79 1584 aa20.21■□□□□ 0.83
MSH5-202ENST00000375740 HFM1A2PYH4 1435 aa20.21■□□□□ 0.83
MSH5-202ENST00000375740 TCOF1Q13428 1488 aaKnown RBP20.18■□□□□ 0.82
MSH5-202ENST00000375740 NAIPQ13075 1403 aa20.17■□□□□ 0.82
MSH5-202ENST00000375740 RAPGEF6Q8TEU7 1601 aa20.16■□□□□ 0.82
MSH5-202ENST00000375740 NUP153P49790 1475 aaKnown RBP20.16■□□□□ 0.82
MSH5-202ENST00000375740 MIA2Q96PC5 1412 aa20.13■□□□□ 0.81
MSH5-202ENST00000375740 JPH4Q96JJ6 628 aa20.13■□□□□ 0.81
MSH5-202ENST00000375740 NUP160Q12769 1436 aa20.13■□□□□ 0.81
MSH5-202ENST00000375740 CHIC2Q9UKJ5 165 aa20.12■□□□□ 0.81
MSH5-202ENST00000375740 UACAQ9BZF9 1416 aa20.12■□□□□ 0.81
MSH5-202ENST00000375740 TIMELESSQ9UNS1 1208 aa20.11■□□□□ 0.81
MSH5-202ENST00000375740 RRP7BPQ9NSQ0 103 aa20.11■□□□□ 0.81
MSH5-202ENST00000375740 CDK11AQ9UQ88 783 aaPredicted RBP20.09■□□□□ 0.81
MSH5-202ENST00000375740 CARMIL2Q6F5E8 1435 aa20.08■□□□□ 0.81
MSH5-202ENST00000375740 PLB1Q6P1J6 1458 aa20.07■□□□□ 0.8
MSH5-202ENST00000375740 PPP1R15AO75807 674 aaPredicted RBP20.04■□□□□ 0.8
MSH5-202ENST00000375740 GCC2Q8IWJ2 1684 aa20.03■□□□□ 0.8
MSH5-202ENST00000375740 PRG4Q92954 1404 aaPredicted RBP20.03■□□□□ 0.8
MSH5-202ENST00000375740 AKNAQ7Z591 1439 aa20.01■□□□□ 0.79
MSH5-202ENST00000375740 ZNF644Q9H582 1327 aaPredicted RBP20.01■□□□□ 0.79
MSH5-202ENST00000375740 TROQ12816 1431 aaPredicted RBP20.01■□□□□ 0.79
MSH5-202ENST00000375740 KDM6BO15054 1643 aa19.99■□□□□ 0.79
MSH5-202ENST00000375740 TRIM52Q96A61 297 aa19.98■□□□□ 0.79
MSH5-202ENST00000375740 DAPK1P53355 1430 aa19.98■□□□□ 0.79
MSH5-202ENST00000375740 TONSLQ96HA7 1378 aa19.97■□□□□ 0.79
MSH5-202ENST00000375740 ABCC5O15440 1437 aa19.96■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms