RNA–Protein interactions for RNA: ENST00000373019.4

SF3A3-201, Transcript of splicing factor 3a subunit 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3A3, Length 3,673 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A3-201ENST00000373019 CFTRP13569 1480 aa13.38□□□□□ -0.27
SF3A3-201ENST00000373019 SOGA1O94964 1423 aa13.38□□□□□ -0.27
SF3A3-201ENST00000373019 CEP164Q9UPV0 1460 aa13.38□□□□□ -0.27
SF3A3-201ENST00000373019 FANCD2Q9BXW9 1451 aa13.37□□□□□ -0.27
SF3A3-201ENST00000373019 DDX10Q13206 875 aaKnown RBP13.34□□□□□ -0.27
SF3A3-201ENST00000373019 UBTFP17480 764 aaKnown RBP13.33□□□□□ -0.28
SF3A3-201ENST00000373019 IRX6P78412 446 aaPredicted RBP13.33□□□□□ -0.28
SF3A3-201ENST00000373019 PPP1R15AO75807 674 aaPredicted RBP13.31□□□□□ -0.28
SF3A3-201ENST00000373019 RUSC2Q8N2Y8 1516 aa13.31□□□□□ -0.28
SF3A3-201ENST00000373019 CCER2I3L3R5 266 aa13.31□□□□□ -0.28
SF3A3-201ENST00000373019 CLIP1P30622 1438 aa13.28□□□□□ -0.28
SF3A3-201ENST00000373019 FBLN2P98095 1184 aa13.27□□□□□ -0.29
SF3A3-201ENST00000373019 GOLGA3Q08378 1498 aa13.27□□□□□ -0.29
SF3A3-201ENST00000373019 MRC2Q9UBG0 1479 aa13.27□□□□□ -0.29
SF3A3-201ENST00000373019 WASHC2AQ641Q2 1341 aa13.25□□□□□ -0.29
SF3A3-201ENST00000373019 PKNOX2Q96KN3 472 aa13.25□□□□□ -0.29
SF3A3-201ENST00000373019 VPS8Q8N3P4 1428 aa13.25□□□□□ -0.29
SF3A3-201ENST00000373019 PPP4R2Q9NY27 417 aa13.24□□□□□ -0.29
SF3A3-201ENST00000373019 EEA1Q15075 1411 aa13.23□□□□□ -0.29
SF3A3-201ENST00000373019 RTL5Q5HYW3 569 aaPredicted RBP13.22□□□□□ -0.29
SF3A3-201ENST00000373019 EIF5BO60841 1220 aaKnown RBP13.22□□□□□ -0.29
SF3A3-201ENST00000373019 C11orf95C9JLR9 678 aaPredicted RBP13.21□□□□□ -0.29
SF3A3-201ENST00000373019 KIF21AQ7Z4S6 1674 aa13.2□□□□□ -0.3
SF3A3-201ENST00000373019 PLEKHG5O94827 1062 aa13.2□□□□□ -0.3
SF3A3-201ENST00000373019 IPO9Q96P70 1041 aaKnown RBP13.19□□□□□ -0.3
SF3A3-201ENST00000373019 WDR97A6NE52 1622 aa13.19□□□□□ -0.3
SF3A3-201ENST00000373019 RANGAP1P46060 587 aaPredicted RBP13.19□□□□□ -0.3
SF3A3-201ENST00000373019 CUX2O14529 1486 aa13.19□□□□□ -0.3
SF3A3-201ENST00000373019 WASHC2CQ9Y4E1 1318 aa13.18□□□□□ -0.3
SF3A3-201ENST00000373019 MAPKBP1O60336 1514 aa13.18□□□□□ -0.3
SF3A3-201ENST00000373019 B4GALNT3Q6L9W6 998 aa13.18□□□□□ -0.3
SF3A3-201ENST00000373019 ANP32CO43423 234 aa13.17□□□□□ -0.3
SF3A3-201ENST00000373019 HNRNPUQ00839 825 aaKnown RBP eCLIP13.13□□□□□ -0.31
SF3A3-201ENST00000373019 HIRIP3Q9BW71 556 aaPredicted RBP13.12□□□□□ -0.31
SF3A3-201ENST00000373019 ZBTB47Q9UFB7 747 aaPredicted RBP13.12□□□□□ -0.31
SF3A3-201ENST00000373019 PRDM2Q13029 1718 aa13.12□□□□□ -0.31
SF3A3-201ENST00000373019 BRPF3Q9ULD4 1205 aa13.12□□□□□ -0.31
SF3A3-201ENST00000373019 TOPBP1Q92547 1522 aa13.11□□□□□ -0.31
SF3A3-201ENST00000373019 URB2Q14146 1524 aaKnown RBP13.11□□□□□ -0.31
SF3A3-201ENST00000373019 KIF21BO75037 1637 aa13.1□□□□□ -0.31
SF3A3-201ENST00000373019 RRBP1Q9P2E9 1410 aaKnown RBP13.1□□□□□ -0.31
SF3A3-201ENST00000373019 DNMBPQ6XZF7 1577 aa13.09□□□□□ -0.31
SF3A3-201ENST00000373019 ANP32AP39687 249 aaKnown RBP13.09□□□□□ -0.31
SF3A3-201ENST00000373019 WDR62O43379 1518 aa13.08□□□□□ -0.31
SF3A3-201ENST00000373019 THOC2Q8NI27 1593 aaKnown RBP13.08□□□□□ -0.32
SF3A3-201ENST00000373019 USP35Q9P2H5 1018 aa13.07□□□□□ -0.32
SF3A3-201ENST00000373019 KANK4Q5T7N3 995 aaPredicted RBP13.06□□□□□ -0.32
SF3A3-201ENST00000373019 TIMELESSQ9UNS1 1208 aa13.05□□□□□ -0.32
SF3A3-201ENST00000373019 IFT140Q96RY7 1462 aa13.05□□□□□ -0.32
SF3A3-201ENST00000373019 NEFMP07197 916 aa13.05□□□□□ -0.32
SF3A3-201ENST00000373019 FGD5Q6ZNL6 1462 aa13.04□□□□□ -0.32
SF3A3-201ENST00000373019 SIN3AQ96ST3 1273 aa13.04□□□□□ -0.32
SF3A3-201ENST00000373019 RAB3GAP2Q9H2M9 1393 aa13.03□□□□□ -0.32
SF3A3-201ENST00000373019 TDRD9Q8NDG6 1382 aaKnown RBP13.02□□□□□ -0.33
SF3A3-201ENST00000373019 POLA1P09884 1462 aaPredicted RBP13.02□□□□□ -0.33
SF3A3-201ENST00000373019 CUX1P39880 1505 aa13.01□□□□□ -0.33
SF3A3-201ENST00000373019 RSPH6AQ9H0K4 717 aa13.01□□□□□ -0.33
SF3A3-201ENST00000373019 LAS1LQ9Y4W2 734 aaKnown RBP13□□□□□ -0.33
SF3A3-201ENST00000373019 RAD54L2Q9Y4B4 1467 aa12.99□□□□□ -0.33
SF3A3-201ENST00000373019 ZMYND15Q9H091 742 aa12.99□□□□□ -0.33
SF3A3-201ENST00000373019 CHMP7Q8WUX9 453 aaPredicted RBP12.99□□□□□ -0.33
SF3A3-201ENST00000373019 RAPGEF2Q9Y4G8 1499 aa12.97□□□□□ -0.33
SF3A3-201ENST00000373019 CCNB3Q8WWL7 1395 aa12.97□□□□□ -0.33
SF3A3-201ENST00000373019 GSE1Q14687 1217 aa12.97□□□□□ -0.33
SF3A3-201ENST00000373019 CCDC184Q52MB2 194 aa12.95□□□□□ -0.34
SF3A3-201ENST00000373019 AQRO60306 1485 aaKnown RBP eCLIP12.95□□□□□ -0.344e-7■■■■■ 36.7
SF3A3-201ENST00000373019 PODXL2Q9NZ53 605 aa12.94□□□□□ -0.34
SF3A3-201ENST00000373019 TOP2BQ02880 1626 aa12.94□□□□□ -0.34
SF3A3-201ENST00000373019 KIF27Q86VH2 1401 aa12.93□□□□□ -0.34
SF3A3-201ENST00000373019 SYNJ1O43426 1573 aa12.93□□□□□ -0.34
SF3A3-201ENST00000373019 ARAP1Q96P48 1450 aa12.92□□□□□ -0.34
SF3A3-201ENST00000373019 ZNF608Q9ULD9 1512 aaPredicted RBP12.91□□□□□ -0.34
SF3A3-201ENST00000373019 VSIG10Q8N0Z9 540 aa12.91□□□□□ -0.34
SF3A3-201ENST00000373019 FAM43AQ8N2R8 423 aa12.91□□□□□ -0.34
SF3A3-201ENST00000373019 GAPVD1Q14C86 1478 aa12.9□□□□□ -0.34
SF3A3-201ENST00000373019 PPM1GO15355 546 aaPredicted RBP12.9□□□□□ -0.34
SF3A3-201ENST00000373019 FRAT1Q92837 279 aaPredicted RBP12.9□□□□□ -0.34
SF3A3-201ENST00000373019 ZBED9Q6R2W3 1325 aa12.9□□□□□ -0.34
SF3A3-201ENST00000373019 OSCARQ8IYS5 282 aa12.9□□□□□ -0.34
SF3A3-201ENST00000373019 SETD5Q9C0A6 1442 aa12.89□□□□□ -0.35
SF3A3-201ENST00000373019 NPM2Q86SE8 214 aaKnown RBP12.88□□□□□ -0.35
SF3A3-201ENST00000373019 GLIPR1L2Q4G1C9 344 aa12.88□□□□□ -0.35
SF3A3-201ENST00000373019 DAXXQ9UER7 740 aaPredicted RBP12.88□□□□□ -0.35
SF3A3-201ENST00000373019 GRIN2BQ13224 1484 aa12.88□□□□□ -0.35
SF3A3-201ENST00000373019 AKNAQ7Z591 1439 aa12.88□□□□□ -0.35
SF3A3-201ENST00000373019 RNF123Q5XPI4 1314 aa12.87□□□□□ -0.35
SF3A3-201ENST00000373019 DCAF11Q8TEB1 546 aa12.87□□□□□ -0.35
SF3A3-201ENST00000373019 ABCA10Q8WWZ4 1543 aa12.87□□□□□ -0.35
SF3A3-201ENST00000373019 BIVM-ERCC5R4GMW8 1640 aa12.86□□□□□ -0.35
SF3A3-201ENST00000373019 NFKBIBQ15653 356 aa12.84□□□□□ -0.35
SF3A3-201ENST00000373019 FAM9BQ8IZU0 186 aa12.83□□□□□ -0.36
SF3A3-201ENST00000373019 EIF4G3O43432 1585 aaKnown RBP12.82□□□□□ -0.36
SF3A3-201ENST00000373019 TARBP1Q13395 1621 aaKnown RBP12.81□□□□□ -0.36
SF3A3-201ENST00000373019 PDE4AP27815 886 aa12.81□□□□□ -0.36
SF3A3-201ENST00000373019 ATP1B4Q9UN42 357 aaPredicted RBP12.81□□□□□ -0.36
SF3A3-201ENST00000373019 SNAPC4Q5SXM2 1469 aa12.81□□□□□ -0.36
SF3A3-201ENST00000373019 SMG6Q86US8 1419 aaKnown RBP12.81□□□□□ -0.36
SF3A3-201ENST00000373019 ARID3CA6NKF2 412 aa12.81□□□□□ -0.36
SF3A3-201ENST00000373019 BACH2Q9BYV9 841 aa12.81□□□□□ -0.36
SF3A3-201ENST00000373019 MAGI1Q96QZ7 1491 aaPredicted RBP12.79□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms