RNA–Protein interactions for RNA: ENST00000372056.8

LDB3-203, Transcript of LIM domain binding 3, humanhuman

TSL 1 (best) BASIC

Gene LDB3, Length 1,868 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3-203ENST00000372056 CHMP7Q8WUX9 453 aaPredicted RBP20.33■□□□□ 0.84
LDB3-203ENST00000372056 GRIN2AQ12879 1464 aa20.31■□□□□ 0.84
LDB3-203ENST00000372056 EFCAB5A4FU69 1503 aa20.26■□□□□ 0.83
LDB3-203ENST00000372056 KIAA0586Q9BVV6 1533 aa20.25■□□□□ 0.83
LDB3-203ENST00000372056 IQGAP2Q13576 1575 aa20.2■□□□□ 0.82
LDB3-203ENST00000372056 NUP160Q12769 1436 aa20.2■□□□□ 0.82
LDB3-203ENST00000372056 FBLN2P98095 1184 aa20.18■□□□□ 0.82
LDB3-203ENST00000372056 VPS8Q8N3P4 1428 aa20.17■□□□□ 0.82
LDB3-203ENST00000372056 PPARGC1BQ86YN6 1023 aaKnown RBP20.16■□□□□ 0.82
LDB3-203ENST00000372056 ARHGAP35Q9NRY4 1499 aa20.16■□□□□ 0.82
LDB3-203ENST00000372056 UGGT2Q9NYU1 1516 aa20.14■□□□□ 0.81
LDB3-203ENST00000372056 HRCP23327 699 aa20.12■□□□□ 0.81
LDB3-203ENST00000372056 SAMD9Q5K651 1589 aa20.11■□□□□ 0.81
LDB3-203ENST00000372056 CEP170Q5SW79 1584 aa20.1■□□□□ 0.81
LDB3-203ENST00000372056 FMN1Q68DA7 1419 aa20.1■□□□□ 0.81
LDB3-203ENST00000372056 ARAP1Q96P48 1450 aa20.09■□□□□ 0.81
LDB3-203ENST00000372056 RANGAP1P46060 587 aaPredicted RBP20.09■□□□□ 0.81
LDB3-203ENST00000372056 APLP2Q06481 763 aa20.08■□□□□ 0.81
LDB3-203ENST00000372056 CHD1O14646 1710 aa20.08■□□□□ 0.8
LDB3-203ENST00000372056 CARMIL2Q6F5E8 1435 aa20.06■□□□□ 0.8
LDB3-203ENST00000372056 JPH4Q96JJ6 628 aa20.03■□□□□ 0.8
LDB3-203ENST00000372056 MAP3K1Q13233 1512 aa19.98■□□□□ 0.79
LDB3-203ENST00000372056 KIAA0556O60303 1618 aa19.97■□□□□ 0.79
LDB3-203ENST00000372056 FHOD3Q2V2M9 1422 aa19.96■□□□□ 0.79
LDB3-203ENST00000372056 FYCO1Q9BQS8 1478 aa19.96■□□□□ 0.79
LDB3-203ENST00000372056 CASKIN1Q8WXD9 1431 aa19.96■□□□□ 0.79
LDB3-203ENST00000372056 TTBK1Q5TCY1 1321 aaPredicted RBP19.95■□□□□ 0.78
LDB3-203ENST00000372056 DISP1Q96F81 1524 aa19.95■□□□□ 0.78
LDB3-203ENST00000372056 SHROOM2Q13796 1616 aa19.93■□□□□ 0.78
LDB3-203ENST00000372056 P3H3Q8IVL6 736 aa19.93■□□□□ 0.78
LDB3-203ENST00000372056 OSCARQ8IYS5 282 aa19.92■□□□□ 0.78
LDB3-203ENST00000372056 CLASP1Q7Z460 1538 aa19.92■□□□□ 0.78
LDB3-203ENST00000372056 PRG4Q92954 1404 aaPredicted RBP19.88■□□□□ 0.77
LDB3-203ENST00000372056 CCDC18Q5T9S5 1454 aa19.85■□□□□ 0.77
LDB3-203ENST00000372056 PCF11O94913 1555 aaKnown RBP19.83■□□□□ 0.77
LDB3-203ENST00000372056 HECW1Q76N89 1606 aa19.83■□□□□ 0.77
LDB3-203ENST00000372056 TIAM1Q13009 1591 aa19.81■□□□□ 0.76
LDB3-203ENST00000372056 PTPRGP23470 1445 aa19.79■□□□□ 0.76
LDB3-203ENST00000372056 CFAP43Q8NDM7 1665 aa19.78■□□□□ 0.76
LDB3-203ENST00000372056 RAPGEF6Q8TEU7 1601 aa19.77■□□□□ 0.76
LDB3-203ENST00000372056 ATP1B4Q9UN42 357 aaPredicted RBP19.77■□□□□ 0.76
LDB3-203ENST00000372056 CDK11AQ9UQ88 783 aaPredicted RBP19.75■□□□□ 0.75
LDB3-203ENST00000372056 KANK4Q5T7N3 995 aaPredicted RBP19.73■□□□□ 0.75
LDB3-203ENST00000372056 LRRC9Q6ZRR7 1453 aa19.73■□□□□ 0.75
LDB3-203ENST00000372056 EPRSP07814 1512 aaKnown RBP19.71■□□□□ 0.75
LDB3-203ENST00000372056 ABCA8O94911 1581 aa19.71■□□□□ 0.75
LDB3-203ENST00000372056 ZEB1P37275 1124 aaPredicted RBP19.71■□□□□ 0.75
LDB3-203ENST00000372056 UACAQ9BZF9 1416 aa19.68■□□□□ 0.74
LDB3-203ENST00000372056 MTUS2Q5JR59 1369 aa19.67■□□□□ 0.74
LDB3-203ENST00000372056 NUP153P49790 1475 aaKnown RBP19.67■□□□□ 0.74
LDB3-203ENST00000372056 EHBP1L1Q8N3D4 1523 aa19.65■□□□□ 0.74
LDB3-203ENST00000372056 UHRF1BP1LA0JNW5 1464 aa19.65■□□□□ 0.74
LDB3-203ENST00000372056 PLB1Q6P1J6 1458 aa19.65■□□□□ 0.74
LDB3-203ENST00000372056 ABCC2Q92887 1545 aa19.61■□□□□ 0.73
LDB3-203ENST00000372056 LRRIQ1Q96JM4 1722 aa19.61■□□□□ 0.73
LDB3-203ENST00000372056 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.6■□□□□ 0.73
LDB3-203ENST00000372056 ERCC6L2Q5T890 1561 aa19.59■□□□□ 0.73
LDB3-203ENST00000372056 RRBP1Q9P2E9 1410 aaKnown RBP19.59■□□□□ 0.73
LDB3-203ENST00000372056 SUPT6HQ7KZ85 1726 aaKnown RBP19.59■□□□□ 0.73
LDB3-203ENST00000372056 PLEKHD1A6NEE1 506 aa19.58■□□□□ 0.72
LDB3-203ENST00000372056 HNRNPUL2Q1KMD3 747 aaKnown RBP19.58■□□□□ 0.72
LDB3-203ENST00000372056 CCER1Q8TC90 406 aaPredicted RBP19.56■□□□□ 0.72
LDB3-203ENST00000372056 ATP10BO94823 1461 aa19.56■□□□□ 0.72
LDB3-203ENST00000372056 CDK13Q14004 1512 aaKnown RBP19.55■□□□□ 0.72
LDB3-203ENST00000372056 TROQ12816 1431 aaPredicted RBP19.54■□□□□ 0.72
LDB3-203ENST00000372056 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP19.53■□□□□ 0.72
LDB3-203ENST00000372056 KDM5BQ9UGL1 1544 aa19.51■□□□□ 0.71
LDB3-203ENST00000372056 CCNB3Q8WWL7 1395 aa19.5■□□□□ 0.71
LDB3-203ENST00000372056 NCOA2Q15596 1464 aa19.5■□□□□ 0.71
LDB3-203ENST00000372056 ARHGEF11O15085 1522 aa19.49■□□□□ 0.71
LDB3-203ENST00000372056 ADCY10Q96PN6 1610 aa19.48■□□□□ 0.71
LDB3-203ENST00000372056 NPM1P06748 294 aaKnown RBP eCLIP19.47■□□□□ 0.71
LDB3-203ENST00000372056 MAGI3Q5TCQ9 1506 aa19.47■□□□□ 0.71
LDB3-203ENST00000372056 MYOM3Q5VTT5 1437 aa19.46■□□□□ 0.71
LDB3-203ENST00000372056 MIA2Q96PC5 1412 aa19.46■□□□□ 0.71
LDB3-203ENST00000372056 PHLDB1Q86UU1 1377 aa19.45■□□□□ 0.7
LDB3-203ENST00000372056 KIF14Q15058 1648 aa19.43■□□□□ 0.7
LDB3-203ENST00000372056 FGD6Q6ZV73 1430 aa19.41■□□□□ 0.7
LDB3-203ENST00000372056 ARID3CA6NKF2 412 aa19.41■□□□□ 0.7
LDB3-203ENST00000372056 ZCCHC11Q5TAX3 1644 aaKnown RBP19.4■□□□□ 0.7
LDB3-203ENST00000372056 ITSN2Q9NZM3 1697 aa19.39■□□□□ 0.69
LDB3-203ENST00000372056 DNAJC5Q9H3Z4 198 aa19.38■□□□□ 0.69
LDB3-203ENST00000372056 RIMBP3CA6NJZ7 1639 aa19.36■□□□□ 0.69
LDB3-203ENST00000372056 RIMBP3BA6NNM3 1639 aa19.36■□□□□ 0.69
LDB3-203ENST00000372056 RIMBP3Q9UFD9 1639 aa19.36■□□□□ 0.69
LDB3-203ENST00000372056 TCOF1Q13428 1488 aaKnown RBP19.34■□□□□ 0.69
LDB3-203ENST00000372056 ABCC10Q5T3U5 1492 aa19.33■□□□□ 0.68
LDB3-203ENST00000372056 WDR7Q9Y4E6 1490 aa19.32■□□□□ 0.68
LDB3-203ENST00000372056 PTPN23Q9H3S7 1636 aa19.31■□□□□ 0.68
LDB3-203ENST00000372056 FAM50AQ14320 339 aaKnown RBP19.31■□□□□ 0.68
LDB3-203ENST00000372056 GPATCH8Q9UKJ3 1502 aaKnown RBP19.31■□□□□ 0.68
LDB3-203ENST00000372056 CFDP1Q9UEE9 299 aaPredicted RBP19.31■□□□□ 0.68
LDB3-203ENST00000372056 ACIN1Q9UKV3 1341 aaKnown RBP19.28■□□□□ 0.68
LDB3-203ENST00000372056 RSPH4AQ5TD94 716 aa19.27■□□□□ 0.68
LDB3-203ENST00000372056 ITGAEP38570 1179 aa19.26■□□□□ 0.67
LDB3-203ENST00000372056 CYB5RLQ6IPT4 315 aa19.26■□□□□ 0.67
LDB3-203ENST00000372056 ASXL2Q76L83 1435 aa19.26■□□□□ 0.67
LDB3-203ENST00000372056 ARAP3Q8WWN8 1544 aa19.26■□□□□ 0.67
LDB3-203ENST00000372056 MAPKBP1O60336 1514 aa19.24■□□□□ 0.67
LDB3-203ENST00000372056 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP19.24■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms