RNA–Protein interactions for RNA: ENST00000370828.3

GPC4-201, Transcript of glypican 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene GPC4, Length 4,960 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC4-201ENST00000370828 NAP1L5Q96NT1 182 aaPredicted RBP16.94■□□□□ 0.3
GPC4-201ENST00000370828 PKNOX2Q96KN3 472 aa16.89■□□□□ 0.29
GPC4-201ENST00000370828 TRIM44Q96DX7 344 aaPredicted RBP16.87■□□□□ 0.29
GPC4-201ENST00000370828 CEP162Q5TB80 1403 aa16.85■□□□□ 0.29
GPC4-201ENST00000370828 ARID3CA6NKF2 412 aa16.85■□□□□ 0.29
GPC4-201ENST00000370828 GOLGA6L2Q8N9W4 650 aaPredicted RBP16.82■□□□□ 0.28
GPC4-201ENST00000370828 EIF4G2P78344 907 aaKnown RBP eCLIP16.8■□□□□ 0.28
GPC4-201ENST00000370828 BECN1Q14457 450 aa16.79■□□□□ 0.28
GPC4-201ENST00000370828 CLIP1P30622 1438 aa16.78■□□□□ 0.28
GPC4-201ENST00000370828 CHIC2Q9UKJ5 165 aa16.77■□□□□ 0.27
GPC4-201ENST00000370828 PABPN1Q86U42 306 aaKnown RBP eCLIP16.76■□□□□ 0.27
GPC4-201ENST00000370828 ZCCHC6Q5VYS8 1495 aaKnown RBP16.76■□□□□ 0.27
GPC4-201ENST00000370828 SIN3AQ96ST3 1273 aa16.76■□□□□ 0.27
GPC4-201ENST00000370828 ARID4BQ4LE39 1312 aaPredicted RBP16.72■□□□□ 0.27
GPC4-201ENST00000370828 VSIG10Q8N0Z9 540 aa16.69■□□□□ 0.26
GPC4-201ENST00000370828 ZNF777Q9ULD5 760 aaPredicted RBP16.68■□□□□ 0.26
GPC4-201ENST00000370828 RGS3P49796 1198 aa16.68■□□□□ 0.26
GPC4-201ENST00000370828 WDR43Q15061 677 aaKnown RBP eCLIP16.67■□□□□ 0.26
GPC4-201ENST00000370828 CCER2I3L3R5 266 aa16.67■□□□□ 0.26
GPC4-201ENST00000370828 KCNH8Q96L42 1107 aa16.66■□□□□ 0.26
GPC4-201ENST00000370828 A0A0U1RQG5 324 aaPredicted RBP16.63■□□□□ 0.25
GPC4-201ENST00000370828 IPO9Q96P70 1041 aaKnown RBP16.63■□□□□ 0.25
GPC4-201ENST00000370828 KDM2AQ9Y2K7 1162 aa16.63■□□□□ 0.25
GPC4-201ENST00000370828 TNIKQ9UKE5 1360 aa16.6■□□□□ 0.25
GPC4-201ENST00000370828 DNTTIP2Q5QJE6 756 aaKnown RBP16.59■□□□□ 0.25
GPC4-201ENST00000370828 GOLGA6L22H0YM25 854 aa16.58■□□□□ 0.24
GPC4-201ENST00000370828 RRP7BPQ9NSQ0 103 aa16.57■□□□□ 0.24
GPC4-201ENST00000370828 GOLGA3Q08378 1498 aa16.57■□□□□ 0.24
GPC4-201ENST00000370828 PTMAP06454 111 aaKnown RBP16.56■□□□□ 0.24
GPC4-201ENST00000370828 ANO8Q9HCE9 1232 aaPredicted RBP16.56■□□□□ 0.24
GPC4-201ENST00000370828 L1TD1Q5T7N2 865 aaKnown RBP16.55■□□□□ 0.24
GPC4-201ENST00000370828 PNNQ9H307 717 aaKnown RBP16.55■□□□□ 0.24
GPC4-201ENST00000370828 RSPH6AQ9H0K4 717 aa16.55■□□□□ 0.24
GPC4-201ENST00000370828 FANCIQ9NVI1 1328 aa16.53■□□□□ 0.24
GPC4-201ENST00000370828 PTMSP20962 102 aa16.53■□□□□ 0.24
GPC4-201ENST00000370828 AMER1Q5JTC6 1135 aaPredicted RBP16.51■□□□□ 0.23
GPC4-201ENST00000370828 RSF1Q96T23 1441 aaPredicted RBP16.51■□□□□ 0.23
GPC4-201ENST00000370828 SCRIBQ14160 1630 aa16.5■□□□□ 0.23
GPC4-201ENST00000370828 ARID3AQ99856 593 aa16.49■□□□□ 0.23
GPC4-201ENST00000370828 SPRYD3Q8NCJ5 442 aa16.49■□□□□ 0.23
GPC4-201ENST00000370828 HSP90AA2PQ14568 343 aaPredicted RBP16.47■□□□□ 0.23
GPC4-201ENST00000370828 GZF1Q9H116 711 aaPredicted RBP16.47■□□□□ 0.23
GPC4-201ENST00000370828 MTUS2Q5JR59 1369 aa16.46■□□□□ 0.23
GPC4-201ENST00000370828 TIMELESSQ9UNS1 1208 aa16.46■□□□□ 0.23
GPC4-201ENST00000370828 EEA1Q15075 1411 aa16.46■□□□□ 0.23
GPC4-201ENST00000370828 TCERG1O14776 1098 aaKnown RBP16.45■□□□□ 0.22
GPC4-201ENST00000370828 TPRNQ4KMQ1 711 aa16.45■□□□□ 0.22
GPC4-201ENST00000370828 SLKQ9H2G2 1235 aaPredicted RBP16.44■□□□□ 0.22
GPC4-201ENST00000370828 MSNP26038 577 aaKnown RBP16.42■□□□□ 0.22
GPC4-201ENST00000370828 PDE4CQ08493 712 aa16.42■□□□□ 0.22
GPC4-201ENST00000370828 UBE2Q2Q8WVN8 375 aa16.42■□□□□ 0.22
GPC4-201ENST00000370828 USP35Q9P2H5 1018 aa16.39■□□□□ 0.22
GPC4-201ENST00000370828 CCNB3Q8WWL7 1395 aa16.39■□□□□ 0.21
GPC4-201ENST00000370828 GSE1Q14687 1217 aa16.39■□□□□ 0.21
GPC4-201ENST00000370828 HSPA5P11021 654 aaKnown RBP16.38■□□□□ 0.21
GPC4-201ENST00000370828 PLCB2Q00722 1185 aa16.38■□□□□ 0.21
GPC4-201ENST00000370828 FRAT1Q92837 279 aaPredicted RBP16.38■□□□□ 0.21
GPC4-201ENST00000370828 FBLN2P98095 1184 aa16.37■□□□□ 0.21
GPC4-201ENST00000370828 HSP90AB1P08238 724 aaKnown RBP16.37■□□□□ 0.21
GPC4-201ENST00000370828 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.37■□□□□ 0.21
GPC4-201ENST00000370828 SLC4A3P48751 1232 aa16.36■□□□□ 0.21
GPC4-201ENST00000370828 MYH16Q9H6N6 1097 aa16.36■□□□□ 0.21
GPC4-201ENST00000370828 ZBTB7CA1YPR0 619 aa16.36■□□□□ 0.21
GPC4-201ENST00000370828 IL27Q8NEV9 243 aa16.35■□□□□ 0.21
GPC4-201ENST00000370828 NEUROD2Q15784 382 aa16.34■□□□□ 0.21
GPC4-201ENST00000370828 CARD11Q9BXL7 1154 aa16.34■□□□□ 0.21
GPC4-201ENST00000370828 GOLGA6L3A6NEY3 463 aa16.34■□□□□ 0.21
GPC4-201ENST00000370828 RCAN3Q9UKA8 241 aa16.33■□□□□ 0.21
GPC4-201ENST00000370828 CHGAP10645 457 aaKnown RBP16.33■□□□□ 0.2
GPC4-201ENST00000370828 CEP164Q9UPV0 1460 aa16.32■□□□□ 0.2
GPC4-201ENST00000370828 HSCBQ8IWL3 235 aa16.32■□□□□ 0.2
GPC4-201ENST00000370828 FTSJ3Q8IY81 847 aaKnown RBP16.31■□□□□ 0.2
GPC4-201ENST00000370828 NUDCQ9Y266 331 aa16.31■□□□□ 0.2
GPC4-201ENST00000370828 CC2D1BQ5T0F9 858 aaKnown RBP16.31■□□□□ 0.2
GPC4-201ENST00000370828 TNNT3P45378 269 aaPredicted RBP16.3■□□□□ 0.2
GPC4-201ENST00000370828 SOGA1O94964 1423 aa16.3■□□□□ 0.2
GPC4-201ENST00000370828 RGL3Q3MIN7 710 aa16.3■□□□□ 0.2
GPC4-201ENST00000370828 KANK4Q5T7N3 995 aaPredicted RBP16.3■□□□□ 0.2
GPC4-201ENST00000370828 PDE4AP27815 886 aa16.29■□□□□ 0.2
GPC4-201ENST00000370828 PPP1R15AO75807 674 aaPredicted RBP16.27■□□□□ 0.2
GPC4-201ENST00000370828 KNSTRNQ9Y448 316 aa16.27■□□□□ 0.2
GPC4-201ENST00000370828 APPP05067 770 aa16.27■□□□□ 0.2
GPC4-201ENST00000370828 SETD5Q9C0A6 1442 aa16.25■□□□□ 0.19
GPC4-201ENST00000370828 RAB3GAP2Q9H2M9 1393 aa16.25■□□□□ 0.19
GPC4-201ENST00000370828 WRNQ14191 1432 aaPredicted RBP eCLIP16.24■□□□□ 0.19
GPC4-201ENST00000370828 BAZ1BQ9UIG0 1483 aaKnown RBP16.24■□□□□ 0.19
GPC4-201ENST00000370828 VPS8Q8N3P4 1428 aa16.23■□□□□ 0.19
GPC4-201ENST00000370828 TSPY4P0CV99 314 aa16.22■□□□□ 0.19
GPC4-201ENST00000370828 TSPY10P0CW01 314 aa16.22■□□□□ 0.19
GPC4-201ENST00000370828 BRPF3Q9ULD4 1205 aa16.22■□□□□ 0.19
GPC4-201ENST00000370828 DHX57Q6P158 1386 aaKnown RBP16.21■□□□□ 0.19
GPC4-201ENST00000370828 PAK3O75914 559 aaPredicted RBP16.21■□□□□ 0.19
GPC4-201ENST00000370828 CHAF1AQ13111 956 aaPredicted RBP16.21■□□□□ 0.19
GPC4-201ENST00000370828 RB1CC1Q8TDY2 1594 aa16.19■□□□□ 0.18
GPC4-201ENST00000370828 GBP4Q96PP9 640 aa16.18■□□□□ 0.18
GPC4-201ENST00000370828 EXOC6Q8TAG9 804 aa16.17■□□□□ 0.18
GPC4-201ENST00000370828 MSH5O43196 834 aa16.16■□□□□ 0.18
GPC4-201ENST00000370828 CASC1Q6TDU7 716 aa16.16■□□□□ 0.18
GPC4-201ENST00000370828 FOXD1Q16676 465 aa16.14■□□□□ 0.17
GPC4-201ENST00000370828 CALRP27797 417 aaKnown RBP16.13■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms