RNA–Protein interactions for RNA: ENST00000358580.9

APBB3-204, Transcript of amyloid beta precursor protein binding family B member 3, human

TSL 5 BASIC

Gene APBB3, Length 2,020 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
APBB3-204	ENST00000358580	DHX57	Q6P158	1386 aa	Known RBP	32.84	■■■□□ 2.85
APBB3-204	ENST00000358580	LRRC9	Q6ZRR7	1453 aa		32.82	■■■□□ 2.85
APBB3-204	ENST00000358580	CFAP43	Q8NDM7	1665 aa		32.8	■■■□□ 2.84
APBB3-204	ENST00000358580	CTTNBP2	Q8WZ74	1663 aa		32.8	■■■□□ 2.84
APBB3-204	ENST00000358580	AQR	O60306	1485 aa	Known RBP eCLIP	32.78	■■■□□ 2.84	2e-6	■■■■■ 39.8
APBB3-204	ENST00000358580	ABCA5	Q8WWZ7	1642 aa		32.77	■■■□□ 2.84
APBB3-204	ENST00000358580	PCF11	O94913	1555 aa	Known RBP	32.74	■■■□□ 2.83
APBB3-204	ENST00000358580	FYCO1	Q9BQS8	1478 aa		32.74	■■■□□ 2.83
APBB3-204	ENST00000358580	CASKIN1	Q8WXD9	1431 aa		32.7	■■■□□ 2.82
APBB3-204	ENST00000358580	GAPVD1	Q14C86	1478 aa		32.67	■■■□□ 2.82
APBB3-204	ENST00000358580	FHOD3	Q2V2M9	1422 aa		32.65	■■■□□ 2.82
APBB3-204	ENST00000358580	FMN1	Q68DA7	1419 aa		32.62	■■■□□ 2.81
APBB3-204	ENST00000358580	KIF21A	Q7Z4S6	1674 aa		32.62	■■■□□ 2.81
APBB3-204	ENST00000358580	PHLDB1	Q86UU1	1377 aa		32.58	■■■□□ 2.81
APBB3-204	ENST00000358580	TDRD9	Q8NDG6	1382 aa	Known RBP	32.58	■■■□□ 2.81
APBB3-204	ENST00000358580	P3H3	Q8IVL6	736 aa		32.56	■■■□□ 2.8
APBB3-204	ENST00000358580	TARBP1	Q13395	1621 aa	Known RBP	32.56	■■■□□ 2.8
APBB3-204	ENST00000358580	SAMD9	Q5K651	1589 aa		32.55	■■■□□ 2.8
APBB3-204	ENST00000358580	ACIN1	Q9UKV3	1341 aa	Known RBP	32.54	■■■□□ 2.8
APBB3-204	ENST00000358580	DROSHA	Q9NRR4	1374 aa	Known RBP eCLIP	32.54	■■■□□ 2.8
APBB3-204	ENST00000358580	SCAF1	Q9H7N4	1312 aa	Known RBP	32.54	■■■□□ 2.8
APBB3-204	ENST00000358580	CENPB	P07199	599 aa	Predicted RBP	32.53	■■■□□ 2.8
APBB3-204	ENST00000358580	SNAPC4	Q5SXM2	1469 aa		32.49	■■■□□ 2.79
APBB3-204	ENST00000358580	RAB3GAP2	Q9H2M9	1393 aa		32.49	■■■□□ 2.79
APBB3-204	ENST00000358580	SETD5	Q9C0A6	1442 aa		32.48	■■■□□ 2.79
APBB3-204	ENST00000358580	DNAJC5B	Q9UF47	199 aa		32.48	■■■□□ 2.79
APBB3-204	ENST00000358580	ITGAE	P38570	1179 aa		32.43	■■■□□ 2.78
APBB3-204	ENST00000358580	THOC2	Q8NI27	1593 aa	Known RBP	32.43	■■■□□ 2.78
APBB3-204	ENST00000358580	ATP1B4	Q9UN42	357 aa	Predicted RBP	32.4	■■■□□ 2.78
APBB3-204	ENST00000358580	NEUROD1	Q13562	356 aa		32.38	■■■□□ 2.77
APBB3-204	ENST00000358580	MRC2	Q9UBG0	1479 aa		32.37	■■■□□ 2.77
APBB3-204	ENST00000358580	PBRM1	Q86U86	1689 aa		32.34	■■■□□ 2.77
APBB3-204	ENST00000358580	GRIN2B	Q13224	1484 aa		32.34	■■■□□ 2.77
APBB3-204	ENST00000358580	FAM50A	Q14320	339 aa	Known RBP	32.34	■■■□□ 2.77
APBB3-204	ENST00000358580	MAPKBP1	O60336	1514 aa		32.33	■■■□□ 2.77
APBB3-204	ENST00000358580	FGD6	Q6ZV73	1430 aa		32.28	■■■□□ 2.76
APBB3-204	ENST00000358580	MTUS2	Q5JR59	1369 aa		32.27	■■■□□ 2.76
APBB3-204	ENST00000358580	MIER1	Q8N108	512 aa		32.27	■■■□□ 2.76
APBB3-204	ENST00000358580	ADAMTS12	P58397	1594 aa		32.25	■■■□□ 2.75
APBB3-204	ENST00000358580	LRRIQ1	Q96JM4	1722 aa		32.22	■■■□□ 2.75
APBB3-204	ENST00000358580	EHBP1L1	Q8N3D4	1523 aa		32.21	■■■□□ 2.75
APBB3-204	ENST00000358580	CCDC18	Q5T9S5	1454 aa		32.2	■■■□□ 2.75
APBB3-204	ENST00000358580	IQGAP2	Q13576	1575 aa		32.19	■■■□□ 2.74
APBB3-204	ENST00000358580	IFT140	Q96RY7	1462 aa		32.19	■■■□□ 2.74
APBB3-204	ENST00000358580	SUPT6H	Q7KZ85	1726 aa	Known RBP	32.17	■■■□□ 2.74
APBB3-204	ENST00000358580	TIMELESS	Q9UNS1	1208 aa		32.16	■■■□□ 2.74
APBB3-204	ENST00000358580	WDR62	O43379	1518 aa		32.15	■■■□□ 2.74
APBB3-204	ENST00000358580	NCOA2	Q15596	1464 aa		32.14	■■■□□ 2.74
APBB3-204	ENST00000358580	MYOM3	Q5VTT5	1437 aa		32.14	■■■□□ 2.74
APBB3-204	ENST00000358580	HECW1	Q76N89	1606 aa		32.11	■■■□□ 2.73
APBB3-204	ENST00000358580	ARHGEF11	O15085	1522 aa		32.11	■■■□□ 2.73
APBB3-204	ENST00000358580	UGGT2	Q9NYU1	1516 aa		32.07	■■■□□ 2.73
APBB3-204	ENST00000358580	HFM1	A2PYH4	1435 aa		32.06	■■■□□ 2.72
APBB3-204	ENST00000358580	GTF3C3	Q9Y5Q9	886 aa		32.01	■■■□□ 2.71
APBB3-204	ENST00000358580	EPRS	P07814	1512 aa	Known RBP	31.97	■■■□□ 2.71
APBB3-204	ENST00000358580	MAGI3	Q5TCQ9	1506 aa		31.97	■■■□□ 2.71
APBB3-204	ENST00000358580	PTPN23	Q9H3S7	1636 aa		31.97	■■■□□ 2.71
APBB3-204	ENST00000358580	TCOF1	Q13428	1488 aa	Known RBP	31.96	■■■□□ 2.71
APBB3-204	ENST00000358580	PTPRK	Q15262	1439 aa		31.96	■■■□□ 2.71
APBB3-204	ENST00000358580	KIAA0586	Q9BVV6	1533 aa		31.96	■■■□□ 2.71
APBB3-204	ENST00000358580	ZNF608	Q9ULD9	1512 aa	Predicted RBP	31.96	■■■□□ 2.71
APBB3-204	ENST00000358580	UACA	Q9BZF9	1416 aa		31.94	■■■□□ 2.7
APBB3-204	ENST00000358580	YTHDC1	Q96MU7	727 aa	Known RBP	31.92	■■■□□ 2.7
APBB3-204	ENST00000358580	NAIP	Q13075	1403 aa		31.91	■■■□□ 2.7
APBB3-204	ENST00000358580	SIN3A	Q96ST3	1273 aa		31.89	■■■□□ 2.7
APBB3-204	ENST00000358580	MIA2	Q96PC5	1412 aa		31.88	■■■□□ 2.69
APBB3-204	ENST00000358580	EIF4G3	O43432	1585 aa	Known RBP	31.86	■■■□□ 2.69
APBB3-204	ENST00000358580	AKNA	Q7Z591	1439 aa		31.85	■■■□□ 2.69
APBB3-204	ENST00000358580	GRIN2A	Q12879	1464 aa		31.84	■■■□□ 2.69
APBB3-204	ENST00000358580	KIAA0556	O60303	1618 aa		31.84	■■■□□ 2.69
APBB3-204	ENST00000358580	PELP1	Q8IZL8	1130 aa	Known RBP	31.83	■■■□□ 2.69
APBB3-204	ENST00000358580	DISP1	Q96F81	1524 aa		31.82	■■■□□ 2.68
APBB3-204	ENST00000358580	MAGI1	Q96QZ7	1491 aa	Predicted RBP	31.81	■■■□□ 2.68
APBB3-204	ENST00000358580	PPP1R15A	O75807	674 aa	Predicted RBP	31.8	■■■□□ 2.68
APBB3-204	ENST00000358580	CDK13	Q14004	1512 aa	Known RBP	31.78	■■■□□ 2.68
APBB3-204	ENST00000358580	GCC2	Q8IWJ2	1684 aa		31.77	■■■□□ 2.68
APBB3-204	ENST00000358580	ERCC6	Q03468	1493 aa		31.76	■■■□□ 2.68
APBB3-204	ENST00000358580	RAPGEF6	Q8TEU7	1601 aa		31.69	■■■□□ 2.66
APBB3-204	ENST00000358580	TONSL	Q96HA7	1378 aa		31.69	■■■□□ 2.66
APBB3-204	ENST00000358580	SYNJ2	O15056	1496 aa		31.68	■■■□□ 2.66
APBB3-204	ENST00000358580	NUP153	P49790	1475 aa	Known RBP	31.67	■■■□□ 2.66
APBB3-204	ENST00000358580	CDK11A	Q9UQ88	783 aa	Predicted RBP	31.62	■■■□□ 2.65
APBB3-204	ENST00000358580	ROCK1	Q13464	1354 aa		31.59	■■■□□ 2.65
APBB3-204	ENST00000358580	CEP170	Q5SW79	1584 aa		31.59	■■■□□ 2.65
APBB3-204	ENST00000358580	CHMP7	Q8WUX9	453 aa	Predicted RBP	31.56	■■■□□ 2.64
APBB3-204	ENST00000358580	RRP7BP	Q9NSQ0	103 aa		31.55	■■■□□ 2.64
APBB3-204	ENST00000358580	NUP160	Q12769	1436 aa		31.55	■■■□□ 2.64
APBB3-204	ENST00000358580	DNMT1	P26358	1616 aa	Known RBP	31.53	■■■□□ 2.64
APBB3-204	ENST00000358580	DAPK1	P53355	1430 aa		31.52	■■■□□ 2.64
APBB3-204	ENST00000358580	CARMIL2	Q6F5E8	1435 aa		31.51	■■■□□ 2.64
APBB3-204	ENST00000358580	CHIC2	Q9UKJ5	165 aa		31.51	■■■□□ 2.64
APBB3-204	ENST00000358580	TRO	Q12816	1431 aa	Predicted RBP	31.5	■■■□□ 2.63
APBB3-204	ENST00000358580	KDM5B	Q9UGL1	1544 aa		31.48	■■■□□ 2.63
APBB3-204	ENST00000358580	DENND4B	O75064	1496 aa	Predicted RBP	31.48	■■■□□ 2.63
APBB3-204	ENST00000358580	KDM6B	O15054	1643 aa		31.46	■■■□□ 2.63
APBB3-204	ENST00000358580	ABCC5	O15440	1437 aa		31.46	■■■□□ 2.63
APBB3-204	ENST00000358580	DDX10	Q13206	875 aa	Known RBP	31.46	■■■□□ 2.63
APBB3-204	ENST00000358580	ARID3C	A6NKF2	412 aa		31.45	■■■□□ 2.63
APBB3-204	ENST00000358580	ADCY10	Q96PN6	1610 aa		31.44	■■■□□ 2.62
APBB3-204	ENST00000358580	ITSN2	Q9NZM3	1697 aa		31.43	■■■□□ 2.62

Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms