RNA–Protein interactions for RNA: ENST00000357376.7

RTN4-203, Transcript of reticulon 4, humanhuman

TSL 1 (best) BASIC

Gene RTN4, Length 4,110 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-203ENST00000357376 CARMIL1Q5VZK9 1371 aa9.5□□□□□ -0.89
RTN4-203ENST00000357376 FAM9BQ8IZU0 186 aa9.49□□□□□ -0.89
RTN4-203ENST00000357376 SETD5Q9C0A6 1442 aa9.47□□□□□ -0.89
RTN4-203ENST00000357376 EIF4G1Q04637 1599 aaKnown RBP9.47□□□□□ -0.89
RTN4-203ENST00000357376 TSHZ2Q9NRE2 1034 aa9.45□□□□□ -0.9
RTN4-203ENST00000357376 ARAP1Q96P48 1450 aa9.44□□□□□ -0.9
RTN4-203ENST00000357376 ZNF777Q9ULD5 760 aaPredicted RBP9.44□□□□□ -0.9
RTN4-203ENST00000357376 SENP3-EIF4A1A0A087X0R7 540 aa9.43□□□□□ -0.9
RTN4-203ENST00000357376 FHAD1B1AJZ9 1412 aa9.42□□□□□ -0.9
RTN4-203ENST00000357376 FBLN2P98095 1184 aa9.42□□□□□ -0.9
RTN4-203ENST00000357376 ANP32EQ9BTT0 268 aa9.42□□□□□ -0.9
RTN4-203ENST00000357376 MRS2Q9HD23 443 aa9.41□□□□□ -0.9
RTN4-203ENST00000357376 FHOD3Q2V2M9 1422 aa9.4□□□□□ -0.9
RTN4-203ENST00000357376 EIF4G2P78344 907 aaKnown RBP eCLIP9.4□□□□□ -0.99e-7■■■■□ 19.9
RTN4-203ENST00000357376 PPP1R15AO75807 674 aaPredicted RBP9.4□□□□□ -0.91
RTN4-203ENST00000357376 ARHGAP35Q9NRY4 1499 aa9.38□□□□□ -0.91
RTN4-203ENST00000357376 PRXQ9BXM0 1461 aa9.38□□□□□ -0.91
RTN4-203ENST00000357376 IGF1RP08069 1367 aa9.37□□□□□ -0.91
RTN4-203ENST00000357376 PHLDB1Q86UU1 1377 aa9.37□□□□□ -0.91
RTN4-203ENST00000357376 FOXD1Q16676 465 aa9.36□□□□□ -0.91
RTN4-203ENST00000357376 TIMELESSQ9UNS1 1208 aa9.36□□□□□ -0.91
RTN4-203ENST00000357376 RRBP1Q9P2E9 1410 aaKnown RBP9.36□□□□□ -0.91
RTN4-203ENST00000357376 BICRAQ9NZM4 1560 aa9.36□□□□□ -0.91
RTN4-203ENST00000357376 RBM19Q9Y4C8 960 aaKnown RBP9.36□□□□□ -0.91
RTN4-203ENST00000357376 CCER2I3L3R5 266 aa9.35□□□□□ -0.91
RTN4-203ENST00000357376 SALL2Q9Y467 1007 aaPredicted RBP9.35□□□□□ -0.91
RTN4-203ENST00000357376 SLC4A1APQ9BWU0 796 aaKnown RBP9.35□□□□□ -0.91
RTN4-203ENST00000357376 TOP2BQ02880 1626 aa9.35□□□□□ -0.91
RTN4-203ENST00000357376 CADPSQ9ULU8 1353 aa9.34□□□□□ -0.91
RTN4-203ENST00000357376 ERICH3Q5RHP9 1530 aa9.34□□□□□ -0.91
RTN4-203ENST00000357376 HSPA5P11021 654 aaKnown RBP9.33□□□□□ -0.92
RTN4-203ENST00000357376 TDRD9Q8NDG6 1382 aaKnown RBP9.33□□□□□ -0.92
RTN4-203ENST00000357376 CUX1P39880 1505 aa9.32□□□□□ -0.92
RTN4-203ENST00000357376 RTL5Q5HYW3 569 aaPredicted RBP9.32□□□□□ -0.92
RTN4-203ENST00000357376 UNC13AQ9UPW8 1703 aa9.31□□□□□ -0.92
RTN4-203ENST00000357376 KDM2AQ9Y2K7 1162 aa9.31□□□□□ -0.92
RTN4-203ENST00000357376 B4GALNT3Q6L9W6 998 aa9.31□□□□□ -0.92
RTN4-203ENST00000357376 NPM2Q86SE8 214 aaKnown RBP9.3□□□□□ -0.92
RTN4-203ENST00000357376 FGD5Q6ZNL6 1462 aa9.3□□□□□ -0.92
RTN4-203ENST00000357376 LRRC9Q6ZRR7 1453 aa9.3□□□□□ -0.92
RTN4-203ENST00000357376 MYT1LQ9UL68 1186 aa9.3□□□□□ -0.92
RTN4-203ENST00000357376 CCDC136Q96JN2 1154 aa9.3□□□□□ -0.92
RTN4-203ENST00000357376 NBR1Q14596 966 aa9.29□□□□□ -0.92
RTN4-203ENST00000357376 TMC1Q8TDI8 760 aa9.29□□□□□ -0.92
RTN4-203ENST00000357376 NCAPD3P42695 1498 aa9.29□□□□□ -0.92
RTN4-203ENST00000357376 FMN1Q68DA7 1419 aa9.28□□□□□ -0.92
RTN4-203ENST00000357376 ANP32AP39687 249 aaKnown RBP9.27□□□□□ -0.93
RTN4-203ENST00000357376 DAXXQ9UER7 740 aaPredicted RBP9.27□□□□□ -0.93
RTN4-203ENST00000357376 RAD54L2Q9Y4B4 1467 aa9.27□□□□□ -0.93
RTN4-203ENST00000357376 CFTRP13569 1480 aa9.27□□□□□ -0.93
RTN4-203ENST00000357376 L3MBTL2Q969R5 705 aa9.26□□□□□ -0.93
RTN4-203ENST00000357376 PEG3Q9GZU2 1588 aa9.26□□□□□ -0.93
RTN4-203ENST00000357376 MPHOSPH9Q99550 1183 aa9.26□□□□□ -0.93
RTN4-203ENST00000357376 CCDC18Q5T9S5 1454 aa9.26□□□□□ -0.93
RTN4-203ENST00000357376 WDR97A6NE52 1622 aa9.25□□□□□ -0.93
RTN4-203ENST00000357376 PPP4R2Q9NY27 417 aa9.25□□□□□ -0.93
RTN4-203ENST00000357376 FANCD2Q9BXW9 1451 aa9.25□□□□□ -0.93
RTN4-203ENST00000357376 CFDP1Q9UEE9 299 aaPredicted RBP9.24□□□□□ -0.93
RTN4-203ENST00000357376 GRWD1Q9BQ67 446 aaKnown RBP eCLIP9.23□□□□□ -0.93
RTN4-203ENST00000357376 FGD6Q6ZV73 1430 aa9.23□□□□□ -0.93
RTN4-203ENST00000357376 TIAM1Q13009 1591 aa9.23□□□□□ -0.93
RTN4-203ENST00000357376 CHMP7Q8WUX9 453 aaPredicted RBP9.21□□□□□ -0.94
RTN4-203ENST00000357376 TSPY4P0CV99 314 aa9.2□□□□□ -0.94
RTN4-203ENST00000357376 TSPY10P0CW01 314 aa9.2□□□□□ -0.94
RTN4-203ENST00000357376 RGL3Q3MIN7 710 aa9.2□□□□□ -0.94
RTN4-203ENST00000357376 CARD11Q9BXL7 1154 aa9.2□□□□□ -0.94
RTN4-203ENST00000357376 BCL11AQ9H165 835 aa9.19□□□□□ -0.94
RTN4-203ENST00000357376 ZBTB47Q9UFB7 747 aaPredicted RBP9.18□□□□□ -0.94
RTN4-203ENST00000357376 UACAQ9BZF9 1416 aa9.18□□□□□ -0.94
RTN4-203ENST00000357376 WASHC2AQ641Q2 1341 aa9.18□□□□□ -0.94
RTN4-203ENST00000357376 HMGXB3Q12766 1538 aa9.18□□□□□ -0.94
RTN4-203ENST00000357376 CASKIN1Q8WXD9 1431 aa9.18□□□□□ -0.94
RTN4-203ENST00000357376 BIVM-ERCC5R4GMW8 1640 aa9.17□□□□□ -0.94
RTN4-203ENST00000357376 PRKRIP1Q9H875 184 aaPredicted RBP9.17□□□□□ -0.94
RTN4-203ENST00000357376 MAPKBP1O60336 1514 aa9.17□□□□□ -0.94
RTN4-203ENST00000357376 PKD2Q13563 968 aa9.16□□□□□ -0.94
RTN4-203ENST00000357376 MYOM3Q5VTT5 1437 aa9.16□□□□□ -0.94
RTN4-203ENST00000357376 CCDC184Q52MB2 194 aa9.15□□□□□ -0.94
RTN4-203ENST00000357376 NCOA2Q15596 1464 aa9.15□□□□□ -0.94
RTN4-203ENST00000357376 PLEKHD1A6NEE1 506 aa9.15□□□□□ -0.94
RTN4-203ENST00000357376 FYCO1Q9BQS8 1478 aa9.15□□□□□ -0.94
RTN4-203ENST00000357376 PCF11O94913 1555 aaKnown RBP9.15□□□□□ -0.95
RTN4-203ENST00000357376 DCAF11Q8TEB1 546 aa9.15□□□□□ -0.95
RTN4-203ENST00000357376 NESP48681 1621 aa9.14□□□□□ -0.95
RTN4-203ENST00000357376 ZNF644Q9H582 1327 aaPredicted RBP9.14□□□□□ -0.95
RTN4-203ENST00000357376 NOP58Q9Y2X3 529 aaKnown RBP9.13□□□□□ -0.95
RTN4-203ENST00000357376 PDS5BQ9NTI5 1447 aa9.12□□□□□ -0.95
RTN4-203ENST00000357376 GAPVD1Q14C86 1478 aa9.12□□□□□ -0.95
RTN4-203ENST00000357376 HFM1A2PYH4 1435 aa9.12□□□□□ -0.95
RTN4-203ENST00000357376 CC2D1BQ5T0F9 858 aaKnown RBP9.12□□□□□ -0.95
RTN4-203ENST00000357376 POLA1P09884 1462 aaPredicted RBP9.11□□□□□ -0.95
RTN4-203ENST00000357376 CCDC7Q96M83 1385 aa9.1□□□□□ -0.95
RTN4-203ENST00000357376 ERICH6BQ5W0A0 696 aa9.1□□□□□ -0.95
RTN4-203ENST00000357376 KIF7Q2M1P5 1343 aa9.1□□□□□ -0.95
RTN4-203ENST00000357376 CANXP27824 592 aaKnown RBP9.1□□□□□ -0.95
RTN4-203ENST00000357376 NAIPQ13075 1403 aa9.1□□□□□ -0.95
RTN4-203ENST00000357376 ZBED9Q6R2W3 1325 aa9.09□□□□□ -0.95
RTN4-203ENST00000357376 NBPF8Q3BBV2 869 aa9.09□□□□□ -0.95
RTN4-203ENST00000357376 NUDCQ9Y266 331 aa9.09□□□□□ -0.95
RTN4-203ENST00000357376 LAS1LQ9Y4W2 734 aaKnown RBP9.09□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 49.5 ms