RNA–Protein interactions for RNA: ENST00000354674.4

SYNE1-203, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,154 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-203ENST00000354674 SNAPC4Q5SXM2 1469 aa15.78■□□□□ 0.12
SYNE1-203ENST00000354674 CTTNBP2Q8WZ74 1663 aa15.74■□□□□ 0.11
SYNE1-203ENST00000354674 SYNJ2O15056 1496 aa15.72■□□□□ 0.11
SYNE1-203ENST00000354674 CLIP1P30622 1438 aa15.72■□□□□ 0.11
SYNE1-203ENST00000354674 GRIN2AQ12879 1464 aa15.7■□□□□ 0.1
SYNE1-203ENST00000354674 GTF3C3Q9Y5Q9 886 aa15.66■□□□□ 0.1
SYNE1-203ENST00000354674 ARHGAP35Q9NRY4 1499 aa15.64■□□□□ 0.1
SYNE1-203ENST00000354674 NEUROD1Q13562 356 aa15.64■□□□□ 0.09
SYNE1-203ENST00000354674 ARAP1Q96P48 1450 aa15.63■□□□□ 0.09
SYNE1-203ENST00000354674 NUP160Q12769 1436 aa15.62■□□□□ 0.09
SYNE1-203ENST00000354674 EFCAB5A4FU69 1503 aa15.62■□□□□ 0.09
SYNE1-203ENST00000354674 CEP170Q5SW79 1584 aa15.61■□□□□ 0.09
SYNE1-203ENST00000354674 KIAA0586Q9BVV6 1533 aa15.61■□□□□ 0.09
SYNE1-203ENST00000354674 IQGAP2Q13576 1575 aa15.61■□□□□ 0.09
SYNE1-203ENST00000354674 CHMP7Q8WUX9 453 aaPredicted RBP15.61■□□□□ 0.09
SYNE1-203ENST00000354674 SAMD9Q5K651 1589 aa15.6■□□□□ 0.09
SYNE1-203ENST00000354674 VPS8Q8N3P4 1428 aa15.59■□□□□ 0.09
SYNE1-203ENST00000354674 CHD1O14646 1710 aa15.58■□□□□ 0.08
SYNE1-203ENST00000354674 UGGT2Q9NYU1 1516 aa15.57■□□□□ 0.08
SYNE1-203ENST00000354674 RANGAP1P46060 587 aaPredicted RBP15.55■□□□□ 0.08
SYNE1-203ENST00000354674 FBLN2P98095 1184 aa15.52■□□□□ 0.08
SYNE1-203ENST00000354674 ACIN1Q9UKV3 1341 aaKnown RBP15.52■□□□□ 0.07
SYNE1-203ENST00000354674 BCL11AQ9H165 835 aa15.5■□□□□ 0.07
SYNE1-203ENST00000354674 DISP1Q96F81 1524 aa15.48■□□□□ 0.07
SYNE1-203ENST00000354674 FHOD3Q2V2M9 1422 aa15.48■□□□□ 0.07
SYNE1-203ENST00000354674 KIAA0556O60303 1618 aa15.47■□□□□ 0.07
SYNE1-203ENST00000354674 SHROOM2Q13796 1616 aa15.45■□□□□ 0.06
SYNE1-203ENST00000354674 CLASP1Q7Z460 1538 aa15.45■□□□□ 0.06
SYNE1-203ENST00000354674 FMN1Q68DA7 1419 aa15.44■□□□□ 0.06
SYNE1-203ENST00000354674 P3H3Q8IVL6 736 aa15.43■□□□□ 0.06
SYNE1-203ENST00000354674 JPH4Q96JJ6 628 aa15.42■□□□□ 0.06
SYNE1-203ENST00000354674 PCF11O94913 1555 aaKnown RBP15.42■□□□□ 0.06
SYNE1-203ENST00000354674 CASKIN1Q8WXD9 1431 aa15.41■□□□□ 0.06
SYNE1-203ENST00000354674 FYCO1Q9BQS8 1478 aa15.41■□□□□ 0.06
SYNE1-203ENST00000354674 MAP3K1Q13233 1512 aa15.41■□□□□ 0.06
SYNE1-203ENST00000354674 CARMIL2Q6F5E8 1435 aa15.38■□□□□ 0.05
SYNE1-203ENST00000354674 PRG4Q92954 1404 aaPredicted RBP15.35■□□□□ 0.05
SYNE1-203ENST00000354674 CFAP43Q8NDM7 1665 aa15.35■□□□□ 0.05
SYNE1-203ENST00000354674 PRKCSHP14314 528 aaPredicted RBP15.34■□□□□ 0.05
SYNE1-203ENST00000354674 TIAM1Q13009 1591 aa15.34■□□□□ 0.05
SYNE1-203ENST00000354674 LRRIQ1Q96JM4 1722 aa15.32■□□□□ 0.04
SYNE1-203ENST00000354674 YTHDC1Q96MU7 727 aaKnown RBP15.32■□□□□ 0.04
SYNE1-203ENST00000354674 APLP2Q06481 763 aa15.31■□□□□ 0.04
SYNE1-203ENST00000354674 HECW1Q76N89 1606 aa15.31■□□□□ 0.04
SYNE1-203ENST00000354674 RAPGEF6Q8TEU7 1601 aa15.29■□□□□ 0.04
SYNE1-203ENST00000354674 ERCC6L2Q5T890 1561 aa15.28■□□□□ 0.04
SYNE1-203ENST00000354674 TRIM26Q12899 539 aaPredicted RBP15.28■□□□□ 0.04
SYNE1-203ENST00000354674 OSCARQ8IYS5 282 aa15.28■□□□□ 0.04
SYNE1-203ENST00000354674 KANK4Q5T7N3 995 aaPredicted RBP15.27■□□□□ 0.04
SYNE1-203ENST00000354674 CCDC18Q5T9S5 1454 aa15.27■□□□□ 0.04
SYNE1-203ENST00000354674 ABCA8O94911 1581 aa15.27■□□□□ 0.03
SYNE1-203ENST00000354674 LRRC9Q6ZRR7 1453 aa15.27■□□□□ 0.03
SYNE1-203ENST00000354674 NUP153P49790 1475 aaKnown RBP15.25■□□□□ 0.03
SYNE1-203ENST00000354674 CENPBP07199 599 aaPredicted RBP15.25■□□□□ 0.03
SYNE1-203ENST00000354674 EPRSP07814 1512 aaKnown RBP15.25■□□□□ 0.03
SYNE1-203ENST00000354674 PLB1Q6P1J6 1458 aa15.24■□□□□ 0.03
SYNE1-203ENST00000354674 PTPRGP23470 1445 aa15.23■□□□□ 0.03
SYNE1-203ENST00000354674 ATP1B4Q9UN42 357 aaPredicted RBP15.2■□□□□ 0.02
SYNE1-203ENST00000354674 CDK13Q14004 1512 aaKnown RBP15.19■□□□□ 0.02
SYNE1-203ENST00000354674 MAGI3Q5TCQ9 1506 aa15.18■□□□□ 0.02
SYNE1-203ENST00000354674 UACAQ9BZF9 1416 aa15.17■□□□□ 0.02
SYNE1-203ENST00000354674 EHBP1L1Q8N3D4 1523 aa15.17■□□□□ 0.02
SYNE1-203ENST00000354674 UHRF1BP1LA0JNW5 1464 aa15.16■□□□□ 0.02
SYNE1-203ENST00000354674 TTBK1Q5TCY1 1321 aaPredicted RBP15.15■□□□□ 0.02
SYNE1-203ENST00000354674 ZEB1P37275 1124 aaPredicted RBP15.15■□□□□ 0.02
SYNE1-203ENST00000354674 ABCC2Q92887 1545 aa15.15■□□□□ 0.02
SYNE1-203ENST00000354674 ARHGEF11O15085 1522 aa15.14■□□□□ 0.01
SYNE1-203ENST00000354674 ATP10BO94823 1461 aa15.14■□□□□ 0.01
SYNE1-203ENST00000354674 MTUS2Q5JR59 1369 aa15.13■□□□□ 0.01
SYNE1-203ENST00000354674 RRBP1Q9P2E9 1410 aaKnown RBP15.13■□□□□ 0.01
SYNE1-203ENST00000354674 SUPT6HQ7KZ85 1726 aaKnown RBP15.12■□□□□ 0.01
SYNE1-203ENST00000354674 PHLDB1Q86UU1 1377 aa15.1■□□□□ 0.01
SYNE1-203ENST00000354674 NCOA2Q15596 1464 aa15.09■□□□□ 0.01
SYNE1-203ENST00000354674 ADCY10Q96PN6 1610 aa15.09■□□□□ 0.01
SYNE1-203ENST00000354674 KDM5BQ9UGL1 1544 aa15.08■□□□□ 0
SYNE1-203ENST00000354674 TROQ12816 1431 aaPredicted RBP15.08■□□□□ 0
SYNE1-203ENST00000354674 CDK11AQ9UQ88 783 aaPredicted RBP15.07■□□□□ 0
SYNE1-203ENST00000354674 ARID3CA6NKF2 412 aa15.06■□□□□ 0
SYNE1-203ENST00000354674 ZCCHC11Q5TAX3 1644 aaKnown RBP15.04■□□□□ -0
SYNE1-203ENST00000354674 DIEXFQ68CQ4 756 aaKnown RBP15.04■□□□□ -0
SYNE1-203ENST00000354674 CCNB3Q8WWL7 1395 aa15.04■□□□□ -0
SYNE1-203ENST00000354674 MYOM3Q5VTT5 1437 aa15.03■□□□□ -0
SYNE1-203ENST00000354674 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP15.03■□□□□ -0
SYNE1-203ENST00000354674 FGD6Q6ZV73 1430 aa15.01□□□□□ -0.01
SYNE1-203ENST00000354674 KIF14Q15058 1648 aa15.01□□□□□ -0.01
SYNE1-203ENST00000354674 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.01□□□□□ -0.01
SYNE1-203ENST00000354674 HNRNPUL2Q1KMD3 747 aaKnown RBP15.01□□□□□ -0.01
SYNE1-203ENST00000354674 RIMBP3CA6NJZ7 1639 aa15□□□□□ -0.01
SYNE1-203ENST00000354674 RIMBP3BA6NNM3 1639 aa15□□□□□ -0.01
SYNE1-203ENST00000354674 RIMBP3Q9UFD9 1639 aa15□□□□□ -0.01
SYNE1-203ENST00000354674 PLEKHD1A6NEE1 506 aa15□□□□□ -0.01
SYNE1-203ENST00000354674 ABCC10Q5T3U5 1492 aa14.99□□□□□ -0.01
SYNE1-203ENST00000354674 MIA2Q96PC5 1412 aa14.98□□□□□ -0.01
SYNE1-203ENST00000354674 TCOF1Q13428 1488 aaKnown RBP14.97□□□□□ -0.01
SYNE1-203ENST00000354674 PTPN23Q9H3S7 1636 aa14.95□□□□□ -0.02
SYNE1-203ENST00000354674 ANP32EQ9BTT0 268 aa14.95□□□□□ -0.02
SYNE1-203ENST00000354674 ITSN2Q9NZM3 1697 aa14.94□□□□□ -0.02
SYNE1-203ENST00000354674 GPATCH8Q9UKJ3 1502 aaKnown RBP14.94□□□□□ -0.02
SYNE1-203ENST00000354674 CDC42BPAQ5VT25 1732 aa14.93□□□□□ -0.02
SYNE1-203ENST00000354674 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP14.91□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 427.2 ms