RNA–Protein interactions for RNA: ENST00000348495.10

SSBP4-202, Transcript of single stranded DNA binding protein 4, humanhuman

APPRIS ALT1 TSL 2 BASIC

Gene SSBP4, Length 1,721 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP4-202ENST00000348495 CTTNBP2Q8WZ74 1663 aa43.78■■■■■ 4.6
SSBP4-202ENST00000348495 CEP170Q5SW79 1584 aa43.77■■■■■ 4.6
SSBP4-202ENST00000348495 KIAA0586Q9BVV6 1533 aa43.67■■■■■ 4.58
SSBP4-202ENST00000348495 IQGAP2Q13576 1575 aa43.6■■■■■ 4.57
SSBP4-202ENST00000348495 CEP162Q5TB80 1403 aa43.58■■■■■ 4.57
SSBP4-202ENST00000348495 CLASP1Q7Z460 1538 aa43.47■■■■■ 4.55
SSBP4-202ENST00000348495 CLIP1P30622 1438 aa43.47■■■■■ 4.55
SSBP4-202ENST00000348495 UGGT2Q9NYU1 1516 aa43.42■■■■■ 4.54
SSBP4-202ENST00000348495 RANGAP1P46060 587 aaPredicted RBP43.41■■■■■ 4.54
SSBP4-202ENST00000348495 OSCARQ8IYS5 282 aa43.4■■■■■ 4.54
SSBP4-202ENST00000348495 ARHGAP35Q9NRY4 1499 aa43.36■■■■■ 4.53
SSBP4-202ENST00000348495 EFCAB5A4FU69 1503 aa43.34■■■■■ 4.53
SSBP4-202ENST00000348495 SAMD9Q5K651 1589 aa43.33■■■■■ 4.53
SSBP4-202ENST00000348495 JPH4Q96JJ6 628 aa43.33■■■■■ 4.53
SSBP4-202ENST00000348495 SHROOM2Q13796 1616 aa43.32■■■■■ 4.53
SSBP4-202ENST00000348495 DISP1Q96F81 1524 aa43.24■■■■■ 4.51
SSBP4-202ENST00000348495 ARAP1Q96P48 1450 aa43.2■■■■■ 4.51
SSBP4-202ENST00000348495 KIAA0556O60303 1618 aa43.18■■■■■ 4.5
SSBP4-202ENST00000348495 PRG4Q92954 1404 aaPredicted RBP43.15■■■■■ 4.5
SSBP4-202ENST00000348495 P3H3Q8IVL6 736 aa43.11■■■■■ 4.49
SSBP4-202ENST00000348495 FHOD3Q2V2M9 1422 aa43.11■■■■■ 4.49
SSBP4-202ENST00000348495 CARMIL2Q6F5E8 1435 aa43.11■■■■■ 4.49
SSBP4-202ENST00000348495 ERCC6L2Q5T890 1561 aa43.01■■■■■ 4.48
SSBP4-202ENST00000348495 VPS8Q8N3P4 1428 aa42.98■■■■■ 4.47
SSBP4-202ENST00000348495 FMN1Q68DA7 1419 aa42.91■■■■■ 4.46
SSBP4-202ENST00000348495 DNAJC5Q9H3Z4 198 aa42.86■■■■■ 4.45
SSBP4-202ENST00000348495 PTPRGP23470 1445 aa42.78■■■■■ 4.44
SSBP4-202ENST00000348495 PCF11O94913 1555 aaKnown RBP42.75■■■■■ 4.43
SSBP4-202ENST00000348495 CASKIN1Q8WXD9 1431 aa42.74■■■■■ 4.43
SSBP4-202ENST00000348495 ARHGEF11O15085 1522 aa42.73■■■■■ 4.43
SSBP4-202ENST00000348495 TTBK1Q5TCY1 1321 aaPredicted RBP42.71■■■■■ 4.43
SSBP4-202ENST00000348495 FYCO1Q9BQS8 1478 aa42.7■■■■■ 4.43
SSBP4-202ENST00000348495 PLB1Q6P1J6 1458 aa42.65■■■■■ 4.42
SSBP4-202ENST00000348495 ABCA8O94911 1581 aa42.64■■■■■ 4.42
SSBP4-202ENST00000348495 RAPGEF6Q8TEU7 1601 aa42.63■■■■■ 4.41
SSBP4-202ENST00000348495 RIMBP3CA6NJZ7 1639 aa42.59■■■■■ 4.41
SSBP4-202ENST00000348495 RIMBP3BA6NNM3 1639 aa42.59■■■■■ 4.41
SSBP4-202ENST00000348495 RIMBP3Q9UFD9 1639 aa42.59■■■■■ 4.41
SSBP4-202ENST00000348495 HECW1Q76N89 1606 aa42.56■■■■■ 4.4
SSBP4-202ENST00000348495 UACAQ9BZF9 1416 aa42.54■■■■■ 4.4
SSBP4-202ENST00000348495 NUP153P49790 1475 aaKnown RBP42.53■■■■■ 4.4
SSBP4-202ENST00000348495 LRRIQ1Q96JM4 1722 aa42.49■■■■■ 4.39
SSBP4-202ENST00000348495 ATP1B4Q9UN42 357 aaPredicted RBP42.48■■■■■ 4.39
SSBP4-202ENST00000348495 ABCC2Q92887 1545 aa42.46■■■■■ 4.39
SSBP4-202ENST00000348495 UHRF1BP1LA0JNW5 1464 aa42.46■■■■■ 4.39
SSBP4-202ENST00000348495 MAP3K1Q13233 1512 aa42.45■■■■■ 4.39
SSBP4-202ENST00000348495 EPRSP07814 1512 aaKnown RBP42.43■■■■■ 4.38
SSBP4-202ENST00000348495 TIAM1Q13009 1591 aa42.4■■■■■ 4.38
SSBP4-202ENST00000348495 CCDC18Q5T9S5 1454 aa42.4■■■■■ 4.38
SSBP4-202ENST00000348495 APLP2Q06481 763 aa42.39■■■■■ 4.38
SSBP4-202ENST00000348495 CFAP43Q8NDM7 1665 aa42.39■■■■■ 4.38
SSBP4-202ENST00000348495 ADCY10Q96PN6 1610 aa42.35■■■■■ 4.37
SSBP4-202ENST00000348495 CDK13Q14004 1512 aaKnown RBP42.34■■■■■ 4.37
SSBP4-202ENST00000348495 ATP10BO94823 1461 aa42.3■■■■■ 4.36
SSBP4-202ENST00000348495 ARID3CA6NKF2 412 aa42.28■■■■■ 4.36
SSBP4-202ENST00000348495 KDM5BQ9UGL1 1544 aa42.26■■■■■ 4.36
SSBP4-202ENST00000348495 CYB5RLQ6IPT4 315 aa42.24■■■■■ 4.35
SSBP4-202ENST00000348495 KANK4Q5T7N3 995 aaPredicted RBP42.23■■■■■ 4.35
SSBP4-202ENST00000348495 LRRC9Q6ZRR7 1453 aa42.21■■■■■ 4.35
SSBP4-202ENST00000348495 ZCCHC11Q5TAX3 1644 aaKnown RBP42.16■■■■■ 4.34
SSBP4-202ENST00000348495 MAGI3Q5TCQ9 1506 aa42.16■■■■■ 4.34
SSBP4-202ENST00000348495 PPARGC1BQ86YN6 1023 aaKnown RBP42.15■■■■■ 4.34
SSBP4-202ENST00000348495 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP42.12■■■■■ 4.33
SSBP4-202ENST00000348495 HNRNPUL2Q1KMD3 747 aaKnown RBP42.12■■■■■ 4.33
SSBP4-202ENST00000348495 CDK11AQ9UQ88 783 aaPredicted RBP42.08■■■■■ 4.33
SSBP4-202ENST00000348495 EHBP1L1Q8N3D4 1523 aa42.07■■■■■ 4.33
SSBP4-202ENST00000348495 MTUS2Q5JR59 1369 aa42.07■■■■■ 4.32
SSBP4-202ENST00000348495 TROQ12816 1431 aaPredicted RBP42.01■■■■■ 4.32
SSBP4-202ENST00000348495 PLEKHD1A6NEE1 506 aa41.98■■■■■ 4.31
SSBP4-202ENST00000348495 NPM1P06748 294 aaKnown RBP eCLIP41.95■■■■■ 4.31
SSBP4-202ENST00000348495 SUPT6HQ7KZ85 1726 aaKnown RBP41.9■■■■■ 4.3
SSBP4-202ENST00000348495 ASXL2Q76L83 1435 aa41.86■■■■■ 4.29
SSBP4-202ENST00000348495 NCOA2Q15596 1464 aa41.86■■■■■ 4.29
SSBP4-202ENST00000348495 WDR7Q9Y4E6 1490 aa41.85■■■■■ 4.29
SSBP4-202ENST00000348495 KIF14Q15058 1648 aa41.83■■■■■ 4.29
SSBP4-202ENST00000348495 MAPKBP1O60336 1514 aa41.83■■■■■ 4.29
SSBP4-202ENST00000348495 PHLDB1Q86UU1 1377 aa41.75■■■■■ 4.27
SSBP4-202ENST00000348495 ABCC10Q5T3U5 1492 aa41.73■■■■■ 4.27
SSBP4-202ENST00000348495 KCNH8Q96L42 1107 aa41.67■■■■■ 4.26
SSBP4-202ENST00000348495 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP41.66■■■■■ 4.266e-7■■■□□ 16.8
SSBP4-202ENST00000348495 MYOM3Q5VTT5 1437 aa41.63■■■■■ 4.25
SSBP4-202ENST00000348495 TTC37Q6PGP7 1564 aa41.61■■■■■ 4.25
SSBP4-202ENST00000348495 CCNB3Q8WWL7 1395 aa41.6■■■■■ 4.25
SSBP4-202ENST00000348495 GPATCH8Q9UKJ3 1502 aaKnown RBP41.58■■■■■ 4.25
SSBP4-202ENST00000348495 RRBP1Q9P2E9 1410 aaKnown RBP41.56■■■■■ 4.24
SSBP4-202ENST00000348495 ABCA9Q8IUA7 1624 aa41.56■■■■■ 4.24
SSBP4-202ENST00000348495 CDC42BPAQ5VT25 1732 aa41.54■■■■■ 4.24
SSBP4-202ENST00000348495 FGD6Q6ZV73 1430 aa41.52■■■■■ 4.24
SSBP4-202ENST00000348495 ITSN2Q9NZM3 1697 aa41.52■■■■■ 4.24
SSBP4-202ENST00000348495 TRIM26Q12899 539 aaPredicted RBP41.5■■■■■ 4.23
SSBP4-202ENST00000348495 MIA2Q96PC5 1412 aa41.49■■■■■ 4.23
SSBP4-202ENST00000348495 PREX2Q70Z35 1606 aa41.47■■■■■ 4.23
SSBP4-202ENST00000348495 GLI2P10070 1586 aa41.46■■■■■ 4.23
SSBP4-202ENST00000348495 MYO5CQ9NQX4 1742 aa41.45■■■■■ 4.23
SSBP4-202ENST00000348495 DIP2BQ9P265 1576 aa41.45■■■■■ 4.23
SSBP4-202ENST00000348495 CDC42BPBQ9Y5S2 1711 aa41.42■■■■■ 4.22
SSBP4-202ENST00000348495 PLCH2O75038 1416 aa41.42■■■■■ 4.22
SSBP4-202ENST00000348495 CFDP1Q9UEE9 299 aaPredicted RBP41.39■■■■■ 4.22
SSBP4-202ENST00000348495 ARAP3Q8WWN8 1544 aa41.38■■■■■ 4.22
SSBP4-202ENST00000348495 PTPN23Q9H3S7 1636 aa41.38■■■■■ 4.22
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms