RNA–Protein interactions for RNA: ENST00000345009.8

SNCA-202, Transcript of synuclein alpha, humanhuman

TSL 1 (best) BASIC

Gene SNCA, Length 1,096 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Synapse .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNCA-202ENST00000345009 CARMIL1Q5VZK9 1371 aa19.65■□□□□ 0.74
SNCA-202ENST00000345009 EEA1Q15075 1411 aa19.65■□□□□ 0.74
SNCA-202ENST00000345009 ADAMTS12P58397 1594 aa19.63■□□□□ 0.73
SNCA-202ENST00000345009 CSRNP3Q8WYN3 585 aa19.62■□□□□ 0.73
SNCA-202ENST00000345009 RUSC2Q8N2Y8 1516 aa19.61■□□□□ 0.73
SNCA-202ENST00000345009 CHD1O14646 1710 aa19.61■□□□□ 0.73
SNCA-202ENST00000345009 GRIN2AQ12879 1464 aa19.6■□□□□ 0.73
SNCA-202ENST00000345009 CUL7Q14999 1698 aa19.6■□□□□ 0.73
SNCA-202ENST00000345009 KCNA4P22459 653 aa19.58■□□□□ 0.72
SNCA-202ENST00000345009 FAM9AQ8IZU1 332 aaPredicted RBP19.56■□□□□ 0.72
SNCA-202ENST00000345009 RAPGEF2Q9Y4G8 1499 aa19.53■□□□□ 0.72
SNCA-202ENST00000345009 RNF216Q9NWF9 866 aaPredicted RBP19.51■□□□□ 0.71
SNCA-202ENST00000345009 NUP160Q12769 1436 aa19.51■□□□□ 0.71
SNCA-202ENST00000345009 PRXQ9BXM0 1461 aa19.47■□□□□ 0.71
SNCA-202ENST00000345009 HOXD11P31277 338 aaPredicted RBP19.46■□□□□ 0.71
SNCA-202ENST00000345009 NPM3O75607 178 aaKnown RBP19.44■□□□□ 0.7
SNCA-202ENST00000345009 CLASP1Q7Z460 1538 aa19.43■□□□□ 0.7
SNCA-202ENST00000345009 CEP170Q5SW79 1584 aa19.42■□□□□ 0.7
SNCA-202ENST00000345009 JPH4Q96JJ6 628 aa19.42■□□□□ 0.7
SNCA-202ENST00000345009 KIAA0586Q9BVV6 1533 aa19.41■□□□□ 0.7
SNCA-202ENST00000345009 DCAF8L1A6NGE4 600 aa19.4■□□□□ 0.7
SNCA-202ENST00000345009 ARHGEF11O15085 1522 aa19.33■□□□□ 0.68
SNCA-202ENST00000345009 UBTFP17480 764 aaKnown RBP19.32■□□□□ 0.68
SNCA-202ENST00000345009 KIF21BO75037 1637 aa19.31■□□□□ 0.68
SNCA-202ENST00000345009 PRG4Q92954 1404 aaPredicted RBP19.3■□□□□ 0.68
SNCA-202ENST00000345009 IQGAP2Q13576 1575 aa19.29■□□□□ 0.68
SNCA-202ENST00000345009 CARMIL2Q6F5E8 1435 aa19.27■□□□□ 0.68
SNCA-202ENST00000345009 RIMBP3CA6NJZ7 1639 aa19.27■□□□□ 0.68
SNCA-202ENST00000345009 RIMBP3BA6NNM3 1639 aa19.27■□□□□ 0.68
SNCA-202ENST00000345009 RIMBP3Q9UFD9 1639 aa19.27■□□□□ 0.68
SNCA-202ENST00000345009 EHMT2Q96KQ7 1210 aa19.27■□□□□ 0.68
SNCA-202ENST00000345009 GOLGA3Q08378 1498 aa19.27■□□□□ 0.67
SNCA-202ENST00000345009 SHROOM2Q13796 1616 aa19.26■□□□□ 0.67
SNCA-202ENST00000345009 CYB5RLQ6IPT4 315 aa19.26■□□□□ 0.67
SNCA-202ENST00000345009 CTTNBP2Q8WZ74 1663 aa19.21■□□□□ 0.67
SNCA-202ENST00000345009 UGGT2Q9NYU1 1516 aa19.19■□□□□ 0.66
SNCA-202ENST00000345009 ARAP1Q96P48 1450 aa19.16■□□□□ 0.66
SNCA-202ENST00000345009 TNIKQ9UKE5 1360 aa19.16■□□□□ 0.66
SNCA-202ENST00000345009 RANGAP1P46060 587 aaPredicted RBP19.15■□□□□ 0.66
SNCA-202ENST00000345009 PTPRGP23470 1445 aa19.15■□□□□ 0.66
SNCA-202ENST00000345009 ERCC6L2Q5T890 1561 aa19.15■□□□□ 0.66
SNCA-202ENST00000345009 TTBK1Q5TCY1 1321 aaPredicted RBP19.12■□□□□ 0.65
SNCA-202ENST00000345009 DISP1Q96F81 1524 aa19.11■□□□□ 0.65
SNCA-202ENST00000345009 P3H3Q8IVL6 736 aa19.08■□□□□ 0.64
SNCA-202ENST00000345009 KIAA0556O60303 1618 aa19.07■□□□□ 0.64
SNCA-202ENST00000345009 NPM1P06748 294 aaKnown RBP eCLIP19.06■□□□□ 0.64
SNCA-202ENST00000345009 LOC105371045A0A1W2PR82 267 aa19.04■□□□□ 0.64
SNCA-202ENST00000345009 EFCAB5A4FU69 1503 aa19.02■□□□□ 0.64
SNCA-202ENST00000345009 SAMD9Q5K651 1589 aa18.99■□□□□ 0.63
SNCA-202ENST00000345009 UACAQ9BZF9 1416 aa18.99■□□□□ 0.63
SNCA-202ENST00000345009 CLIP1P30622 1438 aa18.95■□□□□ 0.62
SNCA-202ENST00000345009 FHOD3Q2V2M9 1422 aa18.94■□□□□ 0.62
SNCA-202ENST00000345009 UHRF1BP1LA0JNW5 1464 aa18.93■□□□□ 0.62
SNCA-202ENST00000345009 ARHGAP35Q9NRY4 1499 aa18.92■□□□□ 0.62
SNCA-202ENST00000345009 FMN1Q68DA7 1419 aa18.91■□□□□ 0.62
SNCA-202ENST00000345009 ABCC2Q92887 1545 aa18.9■□□□□ 0.62
SNCA-202ENST00000345009 CEP162Q5TB80 1403 aa18.89■□□□□ 0.61
SNCA-202ENST00000345009 PLB1Q6P1J6 1458 aa18.89■□□□□ 0.61
SNCA-202ENST00000345009 ADCY10Q96PN6 1610 aa18.88■□□□□ 0.61
SNCA-202ENST00000345009 TRHP20396 242 aaPredicted RBP18.85■□□□□ 0.61
SNCA-202ENST00000345009 ATP1B4Q9UN42 357 aaPredicted RBP18.85■□□□□ 0.61
SNCA-202ENST00000345009 ABCA8O94911 1581 aa18.85■□□□□ 0.61
SNCA-202ENST00000345009 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.84■□□□□ 0.61
SNCA-202ENST00000345009 HNRNPUL2Q1KMD3 747 aaKnown RBP18.84■□□□□ 0.61
SNCA-202ENST00000345009 KDM5BQ9UGL1 1544 aa18.82■□□□□ 0.6
SNCA-202ENST00000345009 RAPGEF6Q8TEU7 1601 aa18.8■□□□□ 0.6
SNCA-202ENST00000345009 ARID3CA6NKF2 412 aa18.79■□□□□ 0.6
SNCA-202ENST00000345009 CDK11AQ9UQ88 783 aaPredicted RBP18.77■□□□□ 0.6
SNCA-202ENST00000345009 MAPKBP1O60336 1514 aa18.77■□□□□ 0.6
SNCA-202ENST00000345009 PLEKHD1A6NEE1 506 aa18.75■□□□□ 0.59
SNCA-202ENST00000345009 ATP10BO94823 1461 aa18.75■□□□□ 0.59
SNCA-202ENST00000345009 ASXL2Q76L83 1435 aa18.74■□□□□ 0.59
SNCA-202ENST00000345009 CASKIN1Q8WXD9 1431 aa18.74■□□□□ 0.59
SNCA-202ENST00000345009 NUP153P49790 1475 aaKnown RBP18.74■□□□□ 0.59
SNCA-202ENST00000345009 FAM69CQ0P6D2 419 aa18.73■□□□□ 0.59
SNCA-202ENST00000345009 ZCCHC11Q5TAX3 1644 aaKnown RBP18.72■□□□□ 0.59
SNCA-202ENST00000345009 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.72■□□□□ 0.59
SNCA-202ENST00000345009 HECW1Q76N89 1606 aa18.71■□□□□ 0.59
SNCA-202ENST00000345009 KCNH8Q96L42 1107 aa18.7■□□□□ 0.58
SNCA-202ENST00000345009 ABCC10Q5T3U5 1492 aa18.69■□□□□ 0.58
SNCA-202ENST00000345009 FYCO1Q9BQS8 1478 aa18.69■□□□□ 0.58
SNCA-202ENST00000345009 WDR7Q9Y4E6 1490 aa18.68■□□□□ 0.58
SNCA-202ENST00000345009 EPRSP07814 1512 aaKnown RBP18.67■□□□□ 0.58
SNCA-202ENST00000345009 VPS8Q8N3P4 1428 aa18.66■□□□□ 0.58
SNCA-202ENST00000345009 CCDC18Q5T9S5 1454 aa18.65■□□□□ 0.58
SNCA-202ENST00000345009 CACNB1Q02641 598 aaPredicted RBP18.65■□□□□ 0.58
SNCA-202ENST00000345009 SLC4A1APQ9BWU0 796 aaKnown RBP18.64■□□□□ 0.57
SNCA-202ENST00000345009 APLP2Q06481 763 aa18.63■□□□□ 0.57
SNCA-202ENST00000345009 PCF11O94913 1555 aaKnown RBP18.63■□□□□ 0.57
SNCA-202ENST00000345009 CDK13Q14004 1512 aaKnown RBP18.6■□□□□ 0.57
SNCA-202ENST00000345009 DIP2BQ9P265 1576 aa18.59■□□□□ 0.57
SNCA-202ENST00000345009 GLI2P10070 1586 aa18.57■□□□□ 0.56
SNCA-202ENST00000345009 TROQ12816 1431 aaPredicted RBP18.55■□□□□ 0.56
SNCA-202ENST00000345009 MTUS2Q5JR59 1369 aa18.54■□□□□ 0.56
SNCA-202ENST00000345009 KIF13AQ9H1H9 1805 aa18.53■□□□□ 0.56
SNCA-202ENST00000345009 CD109Q6YHK3 1445 aa18.53■□□□□ 0.56
SNCA-202ENST00000345009 RNF39Q9H2S5 420 aa18.52■□□□□ 0.56
SNCA-202ENST00000345009 TEX14Q8IWB6 1497 aa18.48■□□□□ 0.55
SNCA-202ENST00000345009 LRRIQ1Q96JM4 1722 aa18.47■□□□□ 0.55
SNCA-202ENST00000345009 MAP3K1Q13233 1512 aa18.47■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 93.7 ms