RNA–Protein interactions for RNA: ENST00000345005.8

CLK3-201, Transcript of CDC like kinase 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLK3, Length 1,846 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-201ENST00000345005 ARHGAP35Q9NRY4 1499 aa19.82■□□□□ 0.76
CLK3-201ENST00000345005 PPARGC1BQ86YN6 1023 aaKnown RBP19.81■□□□□ 0.76
CLK3-201ENST00000345005 FHAD1B1AJZ9 1412 aa19.81■□□□□ 0.76
CLK3-201ENST00000345005 ZEB1P37275 1124 aaPredicted RBP19.81■□□□□ 0.76
CLK3-201ENST00000345005 EIF4G3O43432 1585 aaKnown RBP19.79■□□□□ 0.76
CLK3-201ENST00000345005 ADAMTS12P58397 1594 aa19.79■□□□□ 0.76
CLK3-201ENST00000345005 APLP2Q06481 763 aa19.76■□□□□ 0.75
CLK3-201ENST00000345005 EFCAB5A4FU69 1503 aa19.74■□□□□ 0.75
CLK3-201ENST00000345005 SNAPC4Q5SXM2 1469 aa19.68■□□□□ 0.74
CLK3-201ENST00000345005 MAGI1Q96QZ7 1491 aaPredicted RBP19.68■□□□□ 0.74
CLK3-201ENST00000345005 SAMD9Q5K651 1589 aa19.63■□□□□ 0.73
CLK3-201ENST00000345005 TTBK1Q5TCY1 1321 aaPredicted RBP19.63■□□□□ 0.73
CLK3-201ENST00000345005 IQGAP2Q13576 1575 aa19.62■□□□□ 0.73
CLK3-201ENST00000345005 GRIN2AQ12879 1464 aa19.6■□□□□ 0.73
CLK3-201ENST00000345005 SYNJ2O15056 1496 aa19.6■□□□□ 0.73
CLK3-201ENST00000345005 P3H3Q8IVL6 736 aa19.6■□□□□ 0.73
CLK3-201ENST00000345005 FHOD3Q2V2M9 1422 aa19.58■□□□□ 0.73
CLK3-201ENST00000345005 MAP3K1Q13233 1512 aa19.58■□□□□ 0.72
CLK3-201ENST00000345005 FMN1Q68DA7 1419 aa19.55■□□□□ 0.72
CLK3-201ENST00000345005 KIAA0586Q9BVV6 1533 aa19.55■□□□□ 0.72
CLK3-201ENST00000345005 CHMP7Q8WUX9 453 aaPredicted RBP19.55■□□□□ 0.72
CLK3-201ENST00000345005 PCF11O94913 1555 aaKnown RBP19.54■□□□□ 0.72
CLK3-201ENST00000345005 FYCO1Q9BQS8 1478 aa19.52■□□□□ 0.72
CLK3-201ENST00000345005 UGGT2Q9NYU1 1516 aa19.52■□□□□ 0.72
CLK3-201ENST00000345005 TIAM1Q13009 1591 aa19.52■□□□□ 0.71
CLK3-201ENST00000345005 CASKIN1Q8WXD9 1431 aa19.52■□□□□ 0.71
CLK3-201ENST00000345005 CFAP43Q8NDM7 1665 aa19.5■□□□□ 0.71
CLK3-201ENST00000345005 MYT1Q01538 1121 aa19.49■□□□□ 0.71
CLK3-201ENST00000345005 KANK4Q5T7N3 995 aaPredicted RBP19.48■□□□□ 0.71
CLK3-201ENST00000345005 CEP170Q5SW79 1584 aa19.47■□□□□ 0.71
CLK3-201ENST00000345005 FBLN2P98095 1184 aa19.47■□□□□ 0.71
CLK3-201ENST00000345005 NUP160Q12769 1436 aa19.45■□□□□ 0.7
CLK3-201ENST00000345005 ATP1B4Q9UN42 357 aaPredicted RBP19.43■□□□□ 0.7
CLK3-201ENST00000345005 LRRC9Q6ZRR7 1453 aa19.42■□□□□ 0.7
CLK3-201ENST00000345005 KIAA0556O60303 1618 aa19.4■□□□□ 0.7
CLK3-201ENST00000345005 CHD1O14646 1710 aa19.4■□□□□ 0.7
CLK3-201ENST00000345005 DISP1Q96F81 1524 aa19.39■□□□□ 0.69
CLK3-201ENST00000345005 LRRIQ1Q96JM4 1722 aa19.38■□□□□ 0.69
CLK3-201ENST00000345005 HECW1Q76N89 1606 aa19.35■□□□□ 0.69
CLK3-201ENST00000345005 OSCARQ8IYS5 282 aa19.33■□□□□ 0.69
CLK3-201ENST00000345005 JPH4Q96JJ6 628 aa19.33■□□□□ 0.69
CLK3-201ENST00000345005 RRBP1Q9P2E9 1410 aaKnown RBP19.33■□□□□ 0.68
CLK3-201ENST00000345005 CARMIL2Q6F5E8 1435 aa19.32■□□□□ 0.68
CLK3-201ENST00000345005 CCDC18Q5T9S5 1454 aa19.32■□□□□ 0.68
CLK3-201ENST00000345005 HNRNPUL2Q1KMD3 747 aaKnown RBP19.26■□□□□ 0.67
CLK3-201ENST00000345005 MTUS2Q5JR59 1369 aa19.26■□□□□ 0.67
CLK3-201ENST00000345005 CCNB3Q8WWL7 1395 aa19.26■□□□□ 0.67
CLK3-201ENST00000345005 RAPGEF6Q8TEU7 1601 aa19.26■□□□□ 0.67
CLK3-201ENST00000345005 EPRSP07814 1512 aaKnown RBP19.25■□□□□ 0.67
CLK3-201ENST00000345005 EHBP1L1Q8N3D4 1523 aa19.23■□□□□ 0.67
CLK3-201ENST00000345005 SUPT6HQ7KZ85 1726 aaKnown RBP19.22■□□□□ 0.67
CLK3-201ENST00000345005 PHLDB1Q86UU1 1377 aa19.21■□□□□ 0.67
CLK3-201ENST00000345005 SHROOM2Q13796 1616 aa19.2■□□□□ 0.66
CLK3-201ENST00000345005 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.19■□□□□ 0.66
CLK3-201ENST00000345005 PRG4Q92954 1404 aaPredicted RBP19.18■□□□□ 0.66
CLK3-201ENST00000345005 CCER1Q8TC90 406 aaPredicted RBP19.18■□□□□ 0.66
CLK3-201ENST00000345005 NUP153P49790 1475 aaKnown RBP19.17■□□□□ 0.66
CLK3-201ENST00000345005 CDK13Q14004 1512 aaKnown RBP19.16■□□□□ 0.66
CLK3-201ENST00000345005 MAGI3Q5TCQ9 1506 aa19.15■□□□□ 0.66
CLK3-201ENST00000345005 NCOA2Q15596 1464 aa19.14■□□□□ 0.66
CLK3-201ENST00000345005 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP19.13■□□□□ 0.65
CLK3-201ENST00000345005 PLB1Q6P1J6 1458 aa19.13■□□□□ 0.65
CLK3-201ENST00000345005 ABCA8O94911 1581 aa19.12■□□□□ 0.65
CLK3-201ENST00000345005 ARHGEF11O15085 1522 aa19.12■□□□□ 0.65
CLK3-201ENST00000345005 CLASP1Q7Z460 1538 aa19.12■□□□□ 0.65
CLK3-201ENST00000345005 CDK11AQ9UQ88 783 aaPredicted RBP19.11■□□□□ 0.65
CLK3-201ENST00000345005 FGD6Q6ZV73 1430 aa19.1■□□□□ 0.65
CLK3-201ENST00000345005 PTPRGP23470 1445 aa19.09■□□□□ 0.65
CLK3-201ENST00000345005 MYOM3Q5VTT5 1437 aa19.09■□□□□ 0.65
CLK3-201ENST00000345005 FAM50AQ14320 339 aaKnown RBP19.09■□□□□ 0.65
CLK3-201ENST00000345005 RIMBP3CA6NJZ7 1639 aa19.08■□□□□ 0.65
CLK3-201ENST00000345005 RIMBP3BA6NNM3 1639 aa19.08■□□□□ 0.65
CLK3-201ENST00000345005 RIMBP3Q9UFD9 1639 aa19.08■□□□□ 0.65
CLK3-201ENST00000345005 ARID3CA6NKF2 412 aa19.07■□□□□ 0.64
CLK3-201ENST00000345005 ITGAEP38570 1179 aa19.04■□□□□ 0.64
CLK3-201ENST00000345005 PTPN23Q9H3S7 1636 aa19.02■□□□□ 0.64
CLK3-201ENST00000345005 TROQ12816 1431 aaPredicted RBP19.01■□□□□ 0.63
CLK3-201ENST00000345005 ADCY10Q96PN6 1610 aa19■□□□□ 0.63
CLK3-201ENST00000345005 ERCC6L2Q5T890 1561 aa19■□□□□ 0.63
CLK3-201ENST00000345005 MIA2Q96PC5 1412 aa18.99■□□□□ 0.63
CLK3-201ENST00000345005 ATP10BO94823 1461 aa18.99■□□□□ 0.63
CLK3-201ENST00000345005 UACAQ9BZF9 1416 aa18.98■□□□□ 0.63
CLK3-201ENST00000345005 TCOF1Q13428 1488 aaKnown RBP18.97■□□□□ 0.63
CLK3-201ENST00000345005 PLEKHD1A6NEE1 506 aa18.95■□□□□ 0.62
CLK3-201ENST00000345005 SETD5Q9C0A6 1442 aa18.95■□□□□ 0.62
CLK3-201ENST00000345005 ITSN2Q9NZM3 1697 aa18.94■□□□□ 0.62
CLK3-201ENST00000345005 ABCC2Q92887 1545 aa18.92■□□□□ 0.62
CLK3-201ENST00000345005 KIF14Q15058 1648 aa18.91■□□□□ 0.62
CLK3-201ENST00000345005 CLSPNQ9HAW4 1339 aa18.9■□□□□ 0.62
CLK3-201ENST00000345005 RAB3GAP2Q9H2M9 1393 aa18.9■□□□□ 0.62
CLK3-201ENST00000345005 CYB5RLQ6IPT4 315 aa18.89■□□□□ 0.61
CLK3-201ENST00000345005 SCAF1Q9H7N4 1312 aaKnown RBP18.89■□□□□ 0.61
CLK3-201ENST00000345005 DHX57Q6P158 1386 aaKnown RBP18.88■□□□□ 0.61
CLK3-201ENST00000345005 UHRF1BP1LA0JNW5 1464 aa18.87■□□□□ 0.61
CLK3-201ENST00000345005 CDC42BPAQ5VT25 1732 aa18.85■□□□□ 0.61
CLK3-201ENST00000345005 PTPRKQ15262 1439 aa18.85■□□□□ 0.61
CLK3-201ENST00000345005 GPATCH8Q9UKJ3 1502 aaKnown RBP18.85■□□□□ 0.61
CLK3-201ENST00000345005 ABCC10Q5T3U5 1492 aa18.84■□□□□ 0.61
CLK3-201ENST00000345005 HFM1A2PYH4 1435 aa18.83■□□□□ 0.6
CLK3-201ENST00000345005 CFDP1Q9UEE9 299 aaPredicted RBP18.82■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms