RNA–Protein interactions for RNA: ENST00000342785.8

VCAN-202, Transcript of versican, humanhuman

TSL 1 (best) BASIC

Gene VCAN, Length 7,154 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-202ENST00000342785 SALL2Q9Y467 1007 aaPredicted RBP9.77□□□□□ -0.84
VCAN-202ENST00000342785 CHMP7Q8WUX9 453 aaPredicted RBP9.77□□□□□ -0.85
VCAN-202ENST00000342785 ANP32AP39687 249 aaKnown RBP9.76□□□□□ -0.85
VCAN-202ENST00000342785 CUX2O14529 1486 aa9.76□□□□□ -0.85
VCAN-202ENST00000342785 GRWD1Q9BQ67 446 aaKnown RBP eCLIP9.75□□□□□ -0.85
VCAN-202ENST00000342785 WIZO95785 1651 aa9.75□□□□□ -0.85
VCAN-202ENST00000342785 TIMELESSQ9UNS1 1208 aa9.74□□□□□ -0.85
VCAN-202ENST00000342785 CCDC136Q96JN2 1154 aa9.74□□□□□ -0.85
VCAN-202ENST00000342785 TOP2AP11388 1531 aaKnown RBP9.73□□□□□ -0.85
VCAN-202ENST00000342785 FHAD1B1AJZ9 1412 aa9.73□□□□□ -0.85
VCAN-202ENST00000342785 NPM2Q86SE8 214 aaKnown RBP9.73□□□□□ -0.85
VCAN-202ENST00000342785 RUSC2Q8N2Y8 1516 aa9.73□□□□□ -0.85
VCAN-202ENST00000342785 CANXP27824 592 aaKnown RBP9.73□□□□□ -0.85
VCAN-202ENST00000342785 CFDP1Q9UEE9 299 aaPredicted RBP9.72□□□□□ -0.85
VCAN-202ENST00000342785 PLEKHD1A6NEE1 506 aa9.71□□□□□ -0.85
VCAN-202ENST00000342785 SUPT16HQ9Y5B9 1047 aaKnown RBP9.71□□□□□ -0.85
VCAN-202ENST00000342785 CHGAP10645 457 aaKnown RBP9.69□□□□□ -0.86
VCAN-202ENST00000342785 SETD5Q9C0A6 1442 aa9.69□□□□□ -0.86
VCAN-202ENST00000342785 RAPGEF2Q9Y4G8 1499 aa9.68□□□□□ -0.86
VCAN-202ENST00000342785 RAB3GAP2Q9H2M9 1393 aa9.68□□□□□ -0.86
VCAN-202ENST00000342785 SENP3-EIF4A1A0A087X0R7 540 aa9.67□□□□□ -0.86
VCAN-202ENST00000342785 RGL3Q3MIN7 710 aa9.67□□□□□ -0.86
VCAN-202ENST00000342785 SMARCA2P51531 1590 aa9.66□□□□□ -0.86
VCAN-202ENST00000342785 ATAD2BQ9ULI0 1458 aa9.66□□□□□ -0.86
VCAN-202ENST00000342785 PPP1R15AO75807 674 aaPredicted RBP9.65□□□□□ -0.87
VCAN-202ENST00000342785 CCER2I3L3R5 266 aa9.64□□□□□ -0.87
VCAN-202ENST00000342785 NEFMP07197 916 aa9.63□□□□□ -0.87
VCAN-202ENST00000342785 KCNH8Q96L42 1107 aa9.63□□□□□ -0.87
VCAN-202ENST00000342785 CARD11Q9BXL7 1154 aa9.63□□□□□ -0.87
VCAN-202ENST00000342785 TDRD9Q8NDG6 1382 aaKnown RBP9.63□□□□□ -0.87
VCAN-202ENST00000342785 DHX57Q6P158 1386 aaKnown RBP9.62□□□□□ -0.87
VCAN-202ENST00000342785 WDR43Q15061 677 aaKnown RBP eCLIP9.62□□□□□ -0.87
VCAN-202ENST00000342785 BCL11AQ9H165 835 aa9.62□□□□□ -0.87
VCAN-202ENST00000342785 ZBTB47Q9UFB7 747 aaPredicted RBP9.62□□□□□ -0.87
VCAN-202ENST00000342785 NPM1P06748 294 aaKnown RBP eCLIP9.61□□□□□ -0.87
VCAN-202ENST00000342785 CADPSQ9ULU8 1353 aa9.6□□□□□ -0.87
VCAN-202ENST00000342785 HSPA5P11021 654 aaKnown RBP9.6□□□□□ -0.87
VCAN-202ENST00000342785 SMARCA4P51532 1647 aa9.6□□□□□ -0.87
VCAN-202ENST00000342785 ARHGAP35Q9NRY4 1499 aa9.6□□□□□ -0.87
VCAN-202ENST00000342785 GOLGA6L2Q8N9W4 650 aaPredicted RBP9.59□□□□□ -0.87
VCAN-202ENST00000342785 NBR1Q14596 966 aa9.59□□□□□ -0.88
VCAN-202ENST00000342785 FOXD1Q16676 465 aa9.59□□□□□ -0.88
VCAN-202ENST00000342785 PPP4R2Q9NY27 417 aa9.59□□□□□ -0.88
VCAN-202ENST00000342785 ANP32EQ9BTT0 268 aa9.58□□□□□ -0.88
VCAN-202ENST00000342785 FMN1Q68DA7 1419 aa9.57□□□□□ -0.88
VCAN-202ENST00000342785 FHOD3Q2V2M9 1422 aa9.56□□□□□ -0.88
VCAN-202ENST00000342785 MPHOSPH9Q99550 1183 aa9.55□□□□□ -0.88
VCAN-202ENST00000342785 B4GALNT3Q6L9W6 998 aa9.55□□□□□ -0.88
VCAN-202ENST00000342785 STAG3Q9UJ98 1225 aa9.55□□□□□ -0.88
VCAN-202ENST00000342785 DCAF11Q8TEB1 546 aa9.54□□□□□ -0.88
VCAN-202ENST00000342785 PKD2Q13563 968 aa9.54□□□□□ -0.88
VCAN-202ENST00000342785 L3MBTL2Q969R5 705 aa9.54□□□□□ -0.88
VCAN-202ENST00000342785 KNSTRNQ9Y448 316 aa9.53□□□□□ -0.88
VCAN-202ENST00000342785 EIF4G1Q04637 1599 aaKnown RBP9.53□□□□□ -0.88
VCAN-202ENST00000342785 UPF2Q9HAU5 1272 aaKnown RBP9.53□□□□□ -0.88
VCAN-202ENST00000342785 IGF1RP08069 1367 aa9.52□□□□□ -0.88
VCAN-202ENST00000342785 SLC24A1O60721 1099 aa9.51□□□□□ -0.89
VCAN-202ENST00000342785 CDCA8Q53HL2 280 aa9.51□□□□□ -0.89
VCAN-202ENST00000342785 RBM19Q9Y4C8 960 aaKnown RBP9.51□□□□□ -0.89
VCAN-202ENST00000342785 ESF1Q9H501 851 aaKnown RBP9.51□□□□□ -0.89
VCAN-202ENST00000342785 PDS5BQ9NTI5 1447 aa9.5□□□□□ -0.89
VCAN-202ENST00000342785 TSHZ2Q9NRE2 1034 aa9.5□□□□□ -0.89
VCAN-202ENST00000342785 CC2D1BQ5T0F9 858 aaKnown RBP9.48□□□□□ -0.89
VCAN-202ENST00000342785 SENP3Q9H4L4 574 aaPredicted RBP9.47□□□□□ -0.89
VCAN-202ENST00000342785 HSP90AA1P07900 732 aaKnown RBP9.46□□□□□ -0.9
VCAN-202ENST00000342785 NUP155O75694 1391 aa9.46□□□□□ -0.9
VCAN-202ENST00000342785 ERICH6BQ5W0A0 696 aa9.45□□□□□ -0.9
VCAN-202ENST00000342785 KIF21BO75037 1637 aa9.45□□□□□ -0.9
VCAN-202ENST00000342785 TMF1P82094 1093 aa9.45□□□□□ -0.9
VCAN-202ENST00000342785 NEUROD2Q15784 382 aa9.45□□□□□ -0.9
VCAN-202ENST00000342785 ERCC6Q03468 1493 aa9.44□□□□□ -0.9
VCAN-202ENST00000342785 PHLDB1Q86UU1 1377 aa9.43□□□□□ -0.9
VCAN-202ENST00000342785 CFAP53Q96M91 514 aa9.43□□□□□ -0.9
VCAN-202ENST00000342785 NCAPD3P42695 1498 aa9.42□□□□□ -0.9
VCAN-202ENST00000342785 ANKRD30AQ9BXX3 1397 aa9.42□□□□□ -0.9
VCAN-202ENST00000342785 FANCD2Q9BXW9 1451 aa9.42□□□□□ -0.9
VCAN-202ENST00000342785 CARMIL2Q6F5E8 1435 aa9.41□□□□□ -0.9
VCAN-202ENST00000342785 ARAP1Q96P48 1450 aa9.41□□□□□ -0.9
VCAN-202ENST00000342785 RGS3P49796 1198 aa9.41□□□□□ -0.9
VCAN-202ENST00000342785 NOP58Q9Y2X3 529 aaKnown RBP9.41□□□□□ -0.9
VCAN-202ENST00000342785 DDRGK1Q96HY6 314 aa9.41□□□□□ -0.9
VCAN-202ENST00000342785 PRKRIP1Q9H875 184 aaPredicted RBP9.41□□□□□ -0.9
VCAN-202ENST00000342785 TNNT2P45379 298 aaPredicted RBP9.4□□□□□ -0.9
VCAN-202ENST00000342785 FGD5Q6ZNL6 1462 aa9.4□□□□□ -0.91
VCAN-202ENST00000342785 JPH4Q96JJ6 628 aa9.39□□□□□ -0.91
VCAN-202ENST00000342785 EIF5BO60841 1220 aaKnown RBP9.39□□□□□ -0.91
VCAN-202ENST00000342785 PLPPR3Q6T4P5 718 aa9.39□□□□□ -0.91
VCAN-202ENST00000342785 RALBP1Q15311 655 aa9.39□□□□□ -0.91
VCAN-202ENST00000342785 HNRNPMP52272 730 aaKnown RBP eCLIP9.39□□□□□ -0.91
VCAN-202ENST00000342785 FRAT1Q92837 279 aaPredicted RBP9.38□□□□□ -0.91
VCAN-202ENST00000342785 LAS1LQ9Y4W2 734 aaKnown RBP9.38□□□□□ -0.91
VCAN-202ENST00000342785 PRXQ9BXM0 1461 aa9.38□□□□□ -0.91
VCAN-202ENST00000342785 KTN1Q86UP2 1357 aaKnown RBP9.38□□□□□ -0.91
VCAN-202ENST00000342785 PPM1GO15355 546 aaPredicted RBP9.38□□□□□ -0.91
VCAN-202ENST00000342785 ARXQ96QS3 562 aa9.38□□□□□ -0.91
VCAN-202ENST00000342785 CCDC18Q5T9S5 1454 aa9.38□□□□□ -0.91
VCAN-202ENST00000342785 NUDCQ9Y266 331 aa9.38□□□□□ -0.91
VCAN-202ENST00000342785 RCAN3Q9UKA8 241 aa9.37□□□□□ -0.91
VCAN-202ENST00000342785 RAD54L2Q9Y4B4 1467 aa9.37□□□□□ -0.91
VCAN-202ENST00000342785 ST20-MTHFSA0A0A6YYL1 179 aa9.37□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms